-
1
-
-
3543074662
-
Spartina anglica C. E. Hubbard: a natural model system for analysing early evolutionary changes that affect allopolyploid genomes
-
Ainouche ML, Baumel A, Salmon A (2004a) Spartina anglica C. E. Hubbard: a natural model system for analysing early evolutionary changes that affect allopolyploid genomes. Biol J Lin Soc Lond 82: 475-484.
-
(2004)
Biol J Lin Soc Lond
, vol.82
, pp. 475-484
-
-
Ainouche, M.L.1
Baumel, A.2
Salmon, A.3
-
2
-
-
0347388385
-
Hybridization, polyploidy and speciation in Spartina (Poaceae)
-
Ainouche ML, Baumel A, Salmon A, Yannic G (2004b) Hybridization, polyploidy and speciation in Spartina (Poaceae). New Phytol 161: 165-172.
-
(2004)
New Phytol
, vol.161
, pp. 165-172
-
-
Ainouche, M.L.1
Baumel, A.2
Salmon, A.3
Yannic, G.4
-
3
-
-
65049091436
-
Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)
-
Ainouche ML, Fortuné PM, Salmon A, Parisod C, Grandbastien M-A, Fukunaga K et al (2009) Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). Biol Invasions 11: 1159-1173.
-
(2009)
Biol Invasions
, vol.11
, pp. 1159-1173
-
-
Ainouche, M.L.1
Fortuné, P.M.2
Salmon, A.3
Parisod, C.4
Grandbastien, M.-A.5
Fukunaga, K.6
-
4
-
-
84872616689
-
Polyploid evolution in Spartina: dealing with highly redundant hybrid genomes
-
D. E. Soltis and P. S. Soltis (Eds.), Berlin: Springer
-
Ainouche M, Chelaifa H, Ferreira J, Bellot S, Ainouche A, Salmon A (2012) Polyploid evolution in Spartina: dealing with highly redundant hybrid genomes. In: Soltis DE, Soltis PS (eds) Polyploidy and genome evolution. Springer, Berlin, pp 225-243.
-
(2012)
Polyploidy and Genome Evolution
, pp. 225-243
-
-
Ainouche, M.1
Chelaifa, H.2
Ferreira, J.3
Bellot, S.4
Ainouche, A.5
Salmon, A.6
-
5
-
-
0038444113
-
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms
-
Akhunov ED, Goodyear AW, Geng S, Qi L-L, Echalier B, Gill BS et al (2003) The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res 13: 753-763.
-
(2003)
Genome Res
, vol.13
, pp. 753-763
-
-
Akhunov, E.D.1
Goodyear, A.W.2
Geng, S.3
Qi, L.-L.4
Echalier, B.5
Gill, B.S.6
-
6
-
-
0025205345
-
Metal concentrations in tissues of Spartina alterniflora (Loisel) and sediments of georgia salt marshes
-
Alberts J, Price M, Kania M (1990) Metal concentrations in tissues of Spartina alterniflora (Loisel) and sediments of georgia salt marshes. Estuar Coast Shelf Sci 30: 47-58.
-
(1990)
Estuar Coast Shelf Sci
, vol.30
, pp. 47-58
-
-
Alberts, J.1
Price, M.2
Kania, M.3
-
7
-
-
3343018432
-
Spread of exotic cordgrasses and hybrids (Spartina sp.) in the tidal marshes of San Francisco Bay, California, USA
-
Ayres DR, Smith DL, Zaremba K, Klohr S, Strong DR (2004) Spread of exotic cordgrasses and hybrids (Spartina sp.) in the tidal marshes of San Francisco Bay, California, USA. Biol Invasions 6: 221-231.
-
(2004)
Biol Invasions
, vol.6
, pp. 221-231
-
-
Ayres, D.R.1
Smith, D.L.2
Zaremba, K.3
Klohr, S.4
Strong, D.R.5
-
8
-
-
45449089646
-
Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.)
-
Baisakh N, Subudhi PK, Varadwaj P (2008) Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.). Funct Integr Genomics 8: 287-300.
-
(2008)
Funct Integr Genomics
, vol.8
, pp. 287-300
-
-
Baisakh, N.1
Subudhi, P.K.2
Varadwaj, P.3
-
9
-
-
0034914723
-
Molecular investigations in populations of Spartina anglica C.E. Hubbard (Poaceae) invading coastal Brittany (France)
-
Baumel A, Ainouche ML, Levasseur JE (2001) Molecular investigations in populations of Spartina anglica C. E. Hubbard (Poaceae) invading coastal Brittany (France). Mol Ecol 10: 1689-1701.
-
(2001)
Mol Ecol
, vol.10
, pp. 1689-1701
-
-
Baumel, A.1
Ainouche, M.L.2
Levasseur, J.E.3
-
10
-
-
0036355547
-
Molecular phylogeny of hybridizing species from the genus Spartina Schreb. (Poaceae)
-
Baumel A, Ainouche ML, Bayer RJ, Ainouche AK, Misset MT (2002a) Molecular phylogeny of hybridizing species from the genus Spartina Schreb. (Poaceae). Mol Phylogenet Evol 22: 303-314.
-
(2002)
Mol Phylogenet Evol
, vol.22
, pp. 303-314
-
-
Baumel, A.1
Ainouche, M.L.2
Bayer, R.J.3
Ainouche, A.K.4
Misset, M.T.5
-
11
-
-
0036667682
-
Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica CE Hubbard (Poaceae)
-
Baumel A, Ainouche M, Kalendar R, Schulman AH (2002b) Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica CE Hubbard (Poaceae). Mol Biol Evol 19: 1218-1227.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1218-1227
-
-
Baumel, A.1
Ainouche, M.2
Kalendar, R.3
Schulman, A.H.4
-
12
-
-
0346721858
-
Genetic evidence for hybridization between the native Spartina maritima and the introduced Spartina alterniflora (Poaceae) in South-West France: Spartina × neyrautii re-examined
-
Baumel A, Ainouche ML, Misset MT, Gourret JP, Bayer RJ (2003) Genetic evidence for hybridization between the native Spartina maritima and the introduced Spartina alterniflora (Poaceae) in South-West France: Spartina × neyrautii re-examined. Plant Syst Evol 237: 87-97.
-
(2003)
Plant Syst Evol
, vol.237
, pp. 87-97
-
-
Baumel, A.1
Ainouche, M.L.2
Misset, M.T.3
Gourret, J.P.4
Bayer, R.J.5
-
13
-
-
27444444339
-
Transposable elements, gene creation and genome rearrangement in flowering plants
-
Bennetzen JL (2005) Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev 15: 621-627.
-
(2005)
Curr Opin Genet Dev
, vol.15
, pp. 621-627
-
-
Bennetzen, J.L.1
-
14
-
-
79751531335
-
Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
-
Blanca J, Cañizares J, Roig C, Ziarsolo P, Nuez F, Picó B (2011) Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae). BMC Genomics 12: 104.
-
(2011)
BMC Genomics
, vol.12
, pp. 104
-
-
Blanca, J.1
Cañizares, J.2
Roig, C.3
Ziarsolo, P.4
Nuez, F.5
Picó, B.6
-
15
-
-
79953087426
-
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)
-
Bohra A, Dubey A, Saxena R, Penmetsa RV, Poornima KN, Kumar N et al (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biol 11: 56.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 56
-
-
Bohra, A.1
Dubey, A.2
Saxena, R.3
Penmetsa, R.V.4
Poornima, K.N.5
Kumar, N.6
-
16
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438.
-
(2003)
Nature
, vol.422
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
17
-
-
37149049753
-
Evidence for preferential depths of metal retention in roots of salt marsh plants
-
Caetano M, Vale C, Cesário R, Fonseca N (2008) Evidence for preferential depths of metal retention in roots of salt marsh plants. Sci Total Environ 390: 466-474.
-
(2008)
Sci Total Environ
, vol.390
, pp. 466-474
-
-
Caetano, M.1
Vale, C.2
Cesário, R.3
Fonseca, N.4
-
18
-
-
56949104700
-
Comparison of the role of two Spartina species in terms of phytostabilization and bioaccumulation of metals in the estuarine sediment
-
Cambrollé J, Redondo-Gómez S, Mateos-Naranjo E, Figueroa ME (2008) Comparison of the role of two Spartina species in terms of phytostabilization and bioaccumulation of metals in the estuarine sediment. Mar Pollut Bull 56: 2037-2042.
-
(2008)
Mar Pollut Bull
, vol.56
, pp. 2037-2042
-
-
Cambrollé, J.1
Redondo-Gómez, S.2
Mateos-Naranjo, E.3
Figueroa, M.E.4
-
19
-
-
0028163815
-
Nucleation and facilitation in salt-marsh succession-interactions between Spartina maritima and Arthrocnemum perenne
-
Castellanos E, Figueroa M, Davy A (1994) Nucleation and facilitation in salt-marsh succession-interactions between Spartina maritima and Arthrocnemum perenne. J Ecol 82: 239-248.
-
(1994)
J Ecol
, vol.82
, pp. 239-248
-
-
Castellanos, E.1
Figueroa, M.2
Davy, A.3
-
20
-
-
0033761510
-
Lower limits of Spartina densiflora and S. maritima in a Mediterranean salt marsh determined by different ecophysiological tolerances
-
Castillo JM, Fernández-Baco L, Castellanos EM, Luque CJ, Figueroa ME, Davy AJ (2000) Lower limits of Spartina densiflora and S. maritima in a Mediterranean salt marsh determined by different ecophysiological tolerances. J Ecol 88: 801-812.
-
(2000)
J Ecol
, vol.88
, pp. 801-812
-
-
Castillo, J.M.1
Fernández-Baco, L.2
Castellanos, E.M.3
Luque, C.J.4
Figueroa, M.E.5
Davy, A.J.6
-
21
-
-
77954640413
-
The production of hybrids with high ecological amplitude between exotic Spartina densiflora and native S. maritima in the Iberian Peninsula
-
Castillo JM, Ayres DR, Leira-Doce P, Bailey J, Blum M, Strong DR et al (2010) The production of hybrids with high ecological amplitude between exotic Spartina densiflora and native S. maritima in the Iberian Peninsula. Divers Distrib 16: 547-558.
-
(2010)
Divers Distrib
, vol.16
, pp. 547-558
-
-
Castillo, J.M.1
Ayres, D.R.2
Leira-Doce, P.3
Bailey, J.4
Blum, M.5
Strong, D.R.6
-
22
-
-
61349095306
-
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences
-
Cavagnaro PF, Chung S-M, Szklarczyk M, Grzebelus D, Senalik D, Atkins AE et al (2008) Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Mol Genet Genomics 281: 273-288.
-
(2008)
Mol Genet Genomics
, vol.281
, pp. 273-288
-
-
Cavagnaro, P.F.1
Chung, S.-M.2
Szklarczyk, M.3
Grzebelus, D.4
Senalik, D.5
Atkins, A.E.6
-
23
-
-
3142673029
-
Efficient cloning of plant genomes into bacterial artificial chromosome (BAC) libraries with larger and more uniform insert size
-
Chalhoub B, Belcram H, Caboche M (2004) Efficient cloning of plant genomes into bacterial artificial chromosome (BAC) libraries with larger and more uniform insert size. Plant Biotechnol J 2: 181-188.
-
(2004)
Plant Biotechnol J
, vol.2
, pp. 181-188
-
-
Chalhoub, B.1
Belcram, H.2
Caboche, M.3
-
24
-
-
2442517979
-
Dating the monocot? Dicot divergence and the origin of core eudicots using whole chloroplast genomes
-
Chaw S-M, Chang C-C, Chen H-L, Li W-H (2004) Dating the monocot? Dicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol 58: 424-441.
-
(2004)
J Mol Evol
, vol.58
, pp. 424-441
-
-
Chaw, S.-M.1
Chang, C.-C.2
Chen, H.-L.3
Li, W.-H.4
-
25
-
-
34547280109
-
A BAC end view of the Musa acuminata genome
-
Cheung F, Town C (2007) A BAC end view of the Musa acuminata genome. BMC Plant Biol 7: 29.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 29
-
-
Cheung, F.1
Town, C.2
-
26
-
-
37549037817
-
Oligocene CO2 decline promoted C4 photosynthesis in grasses
-
Christin PA, Besnard G, Samaritani E, Duvall MR, Hodkinson TR, Savolainen V et al (2008) Oligocene CO2 decline promoted C4 photosynthesis in grasses. Curr Biol 18: 37-43.
-
(2008)
Curr Biol
, vol.18
, pp. 37-43
-
-
Christin, P.A.1
Besnard, G.2
Samaritani, E.3
Duvall, M.R.4
Hodkinson, T.R.5
Savolainen, V.6
-
27
-
-
58449133453
-
Evolution of C4 phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype
-
Christin PA, Petitpierre B, Salamin N, Büchi L, Besnard G (2009) Evolution of C4 phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype. Mol Biol Evol 26: 357-365.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 357-365
-
-
Christin, P.A.1
Petitpierre, B.2
Salamin, N.3
Büchi, L.4
Besnard, G.5
-
28
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
29
-
-
84864696893
-
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
-
D'Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O et al (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488: 213-217.
-
(2012)
Nature
, vol.488
, pp. 213-217
-
-
D'Hont, A.1
Denoeud, F.2
Aury, J.-M.3
Baurens, F.-C.4
Carreel, F.5
Garsmeur, O.6
-
30
-
-
33845884592
-
The genetic map of finger millet, Eleusine coracana
-
Dida MM, Srinivasachary Ramakrishnan S, Bennetzen JL, Gale MD, Devos KM (2006) The genetic map of finger millet, Eleusine coracana. Theor Appl Genet 114: 321-332.
-
(2006)
Theor Appl Genet
, vol.114
, pp. 321-332
-
-
Dida, M.M.1
Srinivasachary, R.S.2
Bennetzen, J.L.3
Gale, M.D.4
Devos, K.M.5
-
31
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
32
-
-
84872612020
-
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)
-
Ferreira de Carvalho J, Poulain J, Da Silva C, Wincker P, Michon-Coudouel S, Dheilly A et al (2013) Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). Heredity 110: 181-193.
-
(2013)
Heredity
, vol.110
, pp. 181-193
-
-
Ferreira de Carvalho, J.1
Poulain, J.2
Da Silva, C.3
Wincker, P.4
Michon-Coudouel, S.5
Dheilly, A.6
-
33
-
-
0031048496
-
Molecular evidence for the maternal parentage in the hybrid origin of Spartina anglica C.E. Hubbard
-
Ferris C, King RA, Gray AJ (1997) Molecular evidence for the maternal parentage in the hybrid origin of Spartina anglica C. E. Hubbard. Mol Ecol 6: 185-187.
-
(1997)
Mol Ecol
, vol.6
, pp. 185-187
-
-
Ferris, C.1
King, R.A.2
Gray, A.J.3
-
34
-
-
34248999806
-
Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae)
-
Fortuné PM, Schierenbeck KA, Ainouche AK, Jacquemin J, Wendel JF, Ainouche ML (2007) Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae). Mol Phylogenet Evol 43: 1040-1055.
-
(2007)
Mol Phylogenet Evol
, vol.43
, pp. 1040-1055
-
-
Fortuné, P.M.1
Schierenbeck, K.A.2
Ainouche, A.K.3
Jacquemin, J.4
Wendel, J.F.5
Ainouche, M.L.6
-
35
-
-
52649093289
-
The enigmatic invasive Spartina densiflora: a history of hybridizations in a polyploidy context
-
Fortuné PM, Schierenbeck K, Ayres D, Bortolus A, Catrice O, Brown S et al (2008) The enigmatic invasive Spartina densiflora: a history of hybridizations in a polyploidy context. Mol Ecol 17: 4304-4316.
-
(2008)
Mol Ecol
, vol.17
, pp. 4304-4316
-
-
Fortuné, P.M.1
Schierenbeck, K.2
Ayres, D.3
Bortolus, A.4
Catrice, O.5
Brown, S.6
-
36
-
-
84865569705
-
Investigation of the transcriptome of prairie cord grass, a new cellulosic biomass crop
-
Gedye K, Gonzalez-Hernandez J, Ban Y, Ge X, Thimmapuram J, Sun F, Wright C, Ali S, Boe A, Owens V (2010) Investigation of the transcriptome of prairie cord grass, a new cellulosic biomass crop. Int J Plant Genomics 3: 69.
-
(2010)
Int J Plant Genomics
, vol.3
, pp. 69
-
-
Gedye, K.1
Gonzalez-Hernandez, J.2
Ban, Y.3
Ge, X.4
Thimmapuram, J.5
Sun, F.6
Wright, C.7
Ali, S.8
Boe, A.9
Owens, V.10
-
37
-
-
77956368060
-
Construction and characterization of two BAC libraries representing a deep-coverage of the genome of chicory (Cichorium intybus L., Asteraceae)
-
Gonthier L, Bellec A, Blassiau C, Prat E, Helmstetter N et al (2010) Construction and characterization of two BAC libraries representing a deep-coverage of the genome of chicory (Cichorium intybus L., Asteraceae). BMC Res Notes 3: 225.
-
(2010)
BMC Res Notes
, vol.3
, pp. 225
-
-
Gonthier, L.1
Bellec, A.2
Blassiau, C.3
Prat, E.4
Helmstetter, N.5
-
38
-
-
68649103453
-
A multiple species approach to biomass production from native herbaceous perennial feedstocks
-
Gonzalez-Hernandez JL, Sarath G, Stein JM, Owens V, Gedye K, Boe A (2009) A multiple species approach to biomass production from native herbaceous perennial feedstocks. In Vitro Cell Dev Biol Plant 45: 267-281.
-
(2009)
In Vitro Cell Dev Biol Plant
, vol.45
, pp. 267-281
-
-
Gonzalez-Hernandez, J.L.1
Sarath, G.2
Stein, J.M.3
Owens, V.4
Gedye, K.5
Boe, A.6
-
39
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ et al (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36: 3420-3435.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
García-Gómez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
Nueda, M.J.6
-
40
-
-
84155164309
-
New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins
-
Grass Phylogeny Working Group II
-
Grass Phylogeny Working Group II (2012) New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins. New Phytol 193: 304-312.
-
(2012)
New Phytol
, vol.193
, pp. 304-312
-
-
-
42
-
-
46249086495
-
An overview of the apple genome through BAC end sequence analysis
-
Han Y, Korban SS (2008) An overview of the apple genome through BAC end sequence analysis. Plant Mol Biol 67: 581-588.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 581-588
-
-
Han, Y.1
Korban, S.S.2
-
43
-
-
0035476747
-
Characterization of Fe plaque and associated metals on the roots of mine-waste impacted aquatic plants
-
Hansel CM, Fendorf S, Sutton S, Newville M (2001) Characterization of Fe plaque and associated metals on the roots of mine-waste impacted aquatic plants. Environ Sci Technol 35: 3863-3868.
-
(2001)
Environ Sci Technol
, vol.35
, pp. 3863-3868
-
-
Hansel, C.M.1
Fendorf, S.2
Sutton, S.3
Newville, M.4
-
44
-
-
0034976687
-
A phylogeny of Chloridoideae (Poaceae) based on matK sequences
-
Hilu KW, Alice LA (2001) A phylogeny of Chloridoideae (Poaceae) based on matK sequences. Syst Bot 26: 386-405.
-
(2001)
Syst Bot
, vol.26
, pp. 386-405
-
-
Hilu, K.W.1
Alice, L.A.2
-
45
-
-
78650907887
-
An overview of the Phalaenopsis orchid genome through BAC end sequence analysis
-
Hsu C-C, Chung Y-L, Chen T-C, Lee Y-L, Kuo Y-T, Tsai W-C et al (2011) An overview of the Phalaenopsis orchid genome through BAC end sequence analysis. BMC Plant Biol 11: 3.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 3
-
-
Hsu, C.-C.1
Chung, Y.-L.2
Chen, T.-C.3
Lee, Y.-L.4
Kuo, Y.-T.5
Tsai, W.-C.6
-
46
-
-
41149146663
-
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences
-
Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM et al (2007) The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics 8: 135-147.
-
(2007)
Funct Integr Genomics
, vol.8
, pp. 135-147
-
-
Huo, N.1
Lazo, G.R.2
Vogel, J.P.3
You, F.M.4
Ma, Y.5
Hayden, D.M.6
-
47
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
48
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J (2005) Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
49
-
-
84930744720
-
Plant transposable elements: biology and evolution
-
In: Wendel J, Greilhuber J, Dolezel J, Leitch I (eds) Vienna
-
Kejnovsky E, Hawkins JS, Feschotte C (2012) Plant transposable elements: biology and evolution. In: Wendel J, Greilhuber J, Dolezel J, Leitch I (eds) Plant genome diversity volume 1: plant genomes, their residents and their evolutionary dynamics. Vienna, pp 17-34.
-
(2012)
Plant genome diversity volume 1: Plant genomes, their residents and their evolutionary dynamics
, pp. 17-34
-
-
Kejnovsky, E.1
Hawkins, J.S.2
Feschotte, C.3
-
50
-
-
50249083806
-
Transcriptome analysis of leaf tissue from Bermudagrass (Cynodon dactylon) using a normalised cDNA library
-
Kim C, Jang CS, Kamps TL, Robertson JS, Feltus FA, Paterson AH (2008) Transcriptome analysis of leaf tissue from Bermudagrass (Cynodon dactylon) using a normalised cDNA library. Funct Plant Biol 35: 585-594.
-
(2008)
Funct Plant Biol
, vol.35
, pp. 585-594
-
-
Kim, C.1
Jang, C.S.2
Kamps, T.L.3
Robertson, J.S.4
Feltus, F.A.5
Paterson, A.H.6
-
51
-
-
65049092365
-
Duplication and divergence of grass genomes: integrating the Chloridoids
-
Kim C, Tang H, Paterson AH (2009) Duplication and divergence of grass genomes: integrating the Chloridoids. Trop Plant Biol 2: 51-62.
-
(2009)
Trop Plant Biol
, vol.2
, pp. 51-62
-
-
Kim, C.1
Tang, H.2
Paterson, A.H.3
-
52
-
-
84871448603
-
A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin
-
Kim C, Lee T-H, Compton RO, Robertson JS, Pierce GJ, Paterson AH (2013) A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin. Plant Mol Biol 81: 139-147.
-
(2013)
Plant Mol Biol
, vol.81
, pp. 139-147
-
-
Kim, C.1
Lee, T.-H.2
Compton, R.O.3
Robertson, J.S.4
Pierce, G.J.5
Paterson, A.H.6
-
53
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol İ, Connors J, Gascoyne R, Horsman D et al (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19: 1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
-
54
-
-
49349137234
-
L'acide dimethylsulfonium propanoïque de Spartina anglica
-
Larher F, Hamelin J, Stewart GR (1977) L'acide dimethylsulfonium propanoïque de Spartina anglica. Phytochemistry 16: 2019-2020.
-
(1977)
Phytochemistry
, vol.16
, pp. 2019-2020
-
-
Larher, F.1
Hamelin, J.2
Stewart, G.R.3
-
55
-
-
0042130367
-
Physiological adaptations of the invasive cordgrass Spartina anglica to reducing sediments: rhizome metabolic gas fluxes and enhanced O2 and H2S transport
-
Lee RW (2003) Physiological adaptations of the invasive cordgrass Spartina anglica to reducing sediments: rhizome metabolic gas fluxes and enhanced O2 and H2S transport. Mar Biol 143: 9-15.
-
(2003)
Mar Biol
, vol.143
, pp. 9-15
-
-
Lee, R.W.1
-
56
-
-
0036897944
-
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
-
Li Y-C, Korol AB, Fahima T, Beiles A, Nevo E (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 11: 2453-2465.
-
(2002)
Mol Ecol
, vol.11
, pp. 2453-2465
-
-
Li, Y.-C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
57
-
-
0033032002
-
Metals in halophytes of a contaminated estuary (Odiel Saltmarshes, SW Spain)
-
Luque CJ, Castellanos EM, Castillo JM, Gonzalez M, Gonzalez-Vilches MC, Figueroa ME (1999) Metals in halophytes of a contaminated estuary (Odiel Saltmarshes, SW Spain). Mar Pollut Bull 38: 49-51.
-
(1999)
Mar Pollut Bull
, vol.38
, pp. 49-51
-
-
Luque, C.J.1
Castellanos, E.M.2
Castillo, J.M.3
Gonzalez, M.4
Gonzalez-Vilches, M.C.5
Figueroa, M.E.6
-
58
-
-
2342466982
-
Analyses of LTR-Retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
Ma J, Devos KM, Bennetzen JL (2004) Analyses of LTR-Retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res 14: 860-869.
-
(2004)
Genome Res
, vol.14
, pp. 860-869
-
-
Ma, J.1
Devos, K.M.2
Bennetzen, J.L.3
-
59
-
-
0027651273
-
BARE-1, a Copia-like retroelement in barley (Hordeum vulgare L.)
-
Manninen I, Schulman AH (1993) BARE-1, a Copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol Biol 22: 829-846.
-
(1993)
Plant Mol Biol
, vol.22
, pp. 829-846
-
-
Manninen, I.1
Schulman, A.H.2
-
60
-
-
85027474551
-
Evolution in Spartina (Gramineae). I. The history and morphology of the genus in Britain
-
Marchant CJ (1967) Evolution in Spartina (Gramineae). I. The history and morphology of the genus in Britain. Bot J Linn Soc 60: 1-24.
-
(1967)
Bot J Linn Soc
, vol.60
, pp. 1-24
-
-
Marchant, C.J.1
-
61
-
-
3543135454
-
Spartina maritima (Curtis) Fernald
-
Marchant C, Goodman P (1969) Spartina maritima (Curtis) Fernald. J Ecol 57: 287-302.
-
(1969)
J Ecol
, vol.57
, pp. 287-302
-
-
Marchant, C.1
Goodman, P.2
-
62
-
-
0001625557
-
Taxonomy and distribution of the genus Spartina
-
Mobberley DG (1956) Taxonomy and distribution of the genus Spartina. Iowa State Coll J Sci 30: 471-574.
-
(1956)
Iowa State Coll J Sci
, vol.30
, pp. 471-574
-
-
Mobberley, D.G.1
-
63
-
-
0036478903
-
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
-
Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
-
(2002)
Nat Genet
, vol.30
, pp. 194-200
-
-
Morgante, M.1
Hanafey, M.2
Powell, W.3
-
64
-
-
33845966435
-
BAC clones generated from sheared DNA
-
Osoegawa K, Vessere GM, Shu CL, Hoskins RA, Abad JP, de Pablos B et al (2007) BAC clones generated from sheared DNA. Genomics 89: 291-299.
-
(2007)
Genomics
, vol.89
, pp. 291-299
-
-
Osoegawa, K.1
Vessere, G.M.2
Shu, C.L.3
Hoskins, R.A.4
Abad, J.P.5
de Pablos, B.6
-
65
-
-
4344715431
-
Dimethylsulphopropionate (DMSP) and related compounds in higher plants
-
Otte ML, Wilson G, Morris JT, Moran BM (2004) Dimethylsulphopropionate (DMSP) and related compounds in higher plants. J Exp Bot 55(404): 1919-1925.
-
(2004)
J Exp Bot
, vol.55
, Issue.404
, pp. 1919-1925
-
-
Otte, M.L.1
Wilson, G.2
Morris, J.T.3
Moran, B.M.4
-
66
-
-
0346494835
-
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants
-
Ouyang S, Bell R (2004) The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res 32: 360-363.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 360-363
-
-
Ouyang, S.1
Bell, R.2
-
67
-
-
70449341719
-
Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina
-
Parisod C, Salmon A, Zerjal T, Tenaillon M, Grandbastien M, Ainouche M (2009) Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. New Phytol 184: 1003-1015.
-
(2009)
New Phytol
, vol.184
, pp. 1003-1015
-
-
Parisod, C.1
Salmon, A.2
Zerjal, T.3
Tenaillon, M.4
Grandbastien, M.5
Ainouche, M.6
-
68
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
-
69
-
-
0003294946
-
Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide
-
Peterson DG, Tomkins JP, Frisch DA, Wing RA, Paterson AH (2000) Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide. J Agric Genomics 5. www. ncgr. org/research/jag.
-
(2000)
J Agric Genomics
, vol.5
-
-
Peterson, D.G.1
Tomkins, J.P.2
Frisch, D.A.3
Wing, R.A.4
Paterson, A.H.5
-
70
-
-
77950029210
-
A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees
-
Peterson PM, Romaschenko K, Johnson G (2010) A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees. Mol Phylogenet Evol 55: 580-598.
-
(2010)
Mol Phylogenet Evol
, vol.55
, pp. 580-598
-
-
Peterson, P.M.1
Romaschenko, K.2
Johnson, G.3
-
71
-
-
33749392949
-
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
Piegu B, Guyot R, Picault N, Roulin A, Saniyal A, Kim H et al (2006) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16: 1262-1269.
-
(2006)
Genome Res
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
-
72
-
-
80053395450
-
Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae
-
Prasad V, Stromberg CAE, Leache AD, Samant B, Patnaik R, Tang L et al (2011) Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae. Nat Commun 2: 480.
-
(2011)
Nat Commun
, vol.2
, pp. 480
-
-
Prasad, V.1
Stromberg, C.A.E.2
Leache, A.D.3
Samant, B.4
Patnaik, R.5
Tang, L.6
-
73
-
-
79955681366
-
Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome
-
Ragupathy R, Rathinavelu R, Cloutier S (2011) Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome. BMC Genomics 12: 217.
-
(2011)
BMC Genomics
, vol.12
, pp. 217
-
-
Ragupathy, R.1
Rathinavelu, R.2
Cloutier, S.3
-
74
-
-
84859432310
-
Differential expression of the transcripts of Spartina alterniflora Loisel (Smooth Cordgrass) induced in response to petroleum hydrocarbon
-
Ramanarao MV, Weindorf D, Breitenbeck G, Baisakh N (2011) Differential expression of the transcripts of Spartina alterniflora Loisel (Smooth Cordgrass) induced in response to petroleum hydrocarbon. Mol Biotechnol 51: 18-26.
-
(2011)
Mol Biotechnol
, vol.51
, pp. 18-26
-
-
Ramanarao, M.V.1
Weindorf, D.2
Breitenbeck, G.3
Baisakh, N.4
-
75
-
-
0026307407
-
The evolution of Spartina anglica CE Hubbard (Gramineae)-origin and genetic variability
-
Raybould AF, Gray AJ, Lawrence MJ, Marshall DF (1991) The evolution of Spartina anglica CE Hubbard (Gramineae)-origin and genetic variability. Biol J Linn Soc Lond 43: 111-126.
-
(1991)
Biol J Linn Soc Lond
, vol.43
, pp. 111-126
-
-
Raybould, A.F.1
Gray, A.J.2
Lawrence, M.J.3
Marshall, D.F.4
-
76
-
-
77950935359
-
Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S. alterniflora and S. maritima origin
-
Renny-Byfield S, Ainouche M, Leitch IJ, Lim KY, Le Comber SC, Leitch AR (2010) Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S. alterniflora and S. maritima origin. Ann Bot 105: 527-533.
-
(2010)
Ann Bot
, vol.105
, pp. 527-533
-
-
Renny-Byfield, S.1
Ainouche, M.2
Leitch, I.J.3
Lim, K.Y.4
Le Comber, S.C.5
Leitch, A.R.6
-
77
-
-
0242307152
-
Chromosome studies in the grass subfamily Chloridoideae. I. Basic chromosome numbers
-
Roodt R, Spies JJ (2003a) Chromosome studies in the grass subfamily Chloridoideae. I. Basic chromosome numbers. Taxon 52: 557-566.
-
(2003)
Taxon
, vol.52
, pp. 557-566
-
-
Roodt, R.1
Spies, J.J.2
-
78
-
-
0345581247
-
Chromosome studies in the grass subfamily Chloridoideae. II. An analysis of polyploidy
-
Roodt R, Spies JJ (2003b) Chromosome studies in the grass subfamily Chloridoideae. II. An analysis of polyploidy. Taxon 52: 736-746.
-
(2003)
Taxon
, vol.52
, pp. 736-746
-
-
Roodt, R.1
Spies, J.J.2
-
79
-
-
43549097168
-
Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution
-
Salse J, Bolot S, Throude M, Jouffe V, Piegu B, Quraishi UM et al (2008) Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Plant Cell Online 20: 11.
-
(2008)
Plant Cell Online
, vol.20
, pp. 11
-
-
Salse, J.1
Bolot, S.2
Throude, M.3
Jouffe, V.4
Piegu, B.5
Quraishi, U.M.6
-
80
-
-
33645239758
-
Gene evolution at the ends of wheat chromosomes
-
See DR, Brooks S, Nelson JC, Brown-Guedira G, Friebe B, Gill BS (2006) Gene evolution at the ends of wheat chromosomes. Proc Natl Acad Sci USA 103: 4162-4167.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4162-4167
-
-
See, D.R.1
Brooks, S.2
Nelson, J.C.3
Brown-Guedira, G.4
Friebe, B.5
Gill, B.S.6
-
81
-
-
34547730221
-
Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes
-
Srinivasachary, Dida MM, Gale MD, Devos KM (2007) Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes. Theor Appl Genet 115: 489-499.
-
(2007)
Theor Appl Genet
, vol.115
, pp. 489-499
-
-
Srinivasachary1
Dida, M.M.2
Gale, M.D.3
Devos, K.M.4
-
82
-
-
53349173110
-
Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences
-
Terol J, Naranjo MA, Ollitrault P, Talon M (2008) Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46, 000 BAC end sequences. BMC Genomics 9: 423.
-
(2008)
BMC Genomics
, vol.9
, pp. 423
-
-
Terol, J.1
Naranjo, M.A.2
Ollitrault, P.3
Talon, M.4
-
83
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
84
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
The International Brachypodium Initiative
-
The International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
-
85
-
-
0037854629
-
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
-
Thiel T, Michalek W, Varshney R, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106: 411-422.
-
(2003)
Theor Appl Genet
, vol.106
, pp. 411-422
-
-
Thiel, T.1
Michalek, W.2
Varshney, R.3
Graner, A.4
-
87
-
-
33845186134
-
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
-
Vitte C, Bennetzen JL (2006) Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc Natl Acad Sci USA 103: 17638-17643.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
88
-
-
82755194794
-
Characterizing the walnut genome through analyses of BAC end sequences
-
Wu J, Gu YQ, Hu Y, You FM, Dandekar AM, Leslie CA et al (2011) Characterizing the walnut genome through analyses of BAC end sequences. Plant Mol Biol 78: 95-107.
-
(2011)
Plant Mol Biol
, vol.78
, pp. 95-107
-
-
Wu, J.1
Gu, Y.Q.2
Hu, Y.3
You, F.M.4
Dandekar, A.M.5
Leslie, C.A.6
-
89
-
-
0347982617
-
Uniformity of the nuclear and chloroplast genomes of Spartina maritima (Poaceae), a salt-marsh species in decline along the Western European Coast
-
Yannic G, Baumel A, Ainouche M (2004) Uniformity of the nuclear and chloroplast genomes of Spartina maritima (Poaceae), a salt-marsh species in decline along the Western European Coast. Heredity 93: 182-188.
-
(2004)
Heredity
, vol.93
, pp. 182-188
-
-
Yannic, G.1
Baumel, A.2
Ainouche, M.3
-
90
-
-
46049108350
-
BatchPrimer3: a high throughput web application for PCR and sequencing primer design
-
You F, Huo N, Gu Y, Luo M, Ma Y, Hane D et al (2008) BatchPrimer3: a high throughput web application for PCR and sequencing primer design. BMC Bioinformatics 9: 253.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 253
-
-
You, F.1
Huo, N.2
Gu, Y.3
Luo, M.4
Ma, Y.5
Hane, D.6
-
91
-
-
20144366003
-
The genomes of Oryza sativa: a history of duplications
-
Yu J, Wang J, Lin W, Li S, Li H, Zhou J et al (2005) The genomes of Oryza sativa: a history of duplications. PLoS Biol 3: e38.
-
(2005)
PLoS Biol
, vol.3
-
-
Yu, J.1
Wang, J.2
Lin, W.3
Li, S.4
Li, H.5
Zhou, J.6
-
92
-
-
33745852210
-
Expressed sequence tag analysis in tef Eragrostis tef (Zucc) Trotter
-
Yu J-K, Sun Q, Rota ML, Edwards H, Tefera H, Sorrells ME (2006) Expressed sequence tag analysis in tef Eragrostis tef (Zucc) Trotter. Genome 49: 365-372.
-
(2006)
Genome
, vol.49
, pp. 365-372
-
-
Yu, J.-K.1
Sun, Q.2
Rota, M.L.3
Edwards, H.4
Tefera, H.5
Sorrells, M.E.6
-
93
-
-
84863393816
-
Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
-
Zalapa JE, Cuevas H, Zhu H, Steffan S, Senalik D, Zeldin E et al (2012) Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences. Am J Bot 99: 193-208.
-
(2012)
Am J Bot
, vol.99
, pp. 193-208
-
-
Zalapa, J.E.1
Cuevas, H.2
Zhu, H.3
Steffan, S.4
Senalik, D.5
Zeldin, E.6
-
94
-
-
0034970292
-
RFLP linkage map of the Ethiopian cereal tef: Eragrostis tef (Zucc) Trotter
-
Zhang D, Ayele M, Tefera H, Nguyen HT (2001) RFLP linkage map of the Ethiopian cereal tef: Eragrostis tef (Zucc) Trotter. Theor Appl Genet 102: 957-964.
-
(2001)
Theor Appl Genet
, vol.102
, pp. 957-964
-
-
Zhang, D.1
Ayele, M.2
Tefera, H.3
Nguyen, H.T.4
-
95
-
-
0036847093
-
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3
-
Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K et al (2002) Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell 14: 2825-2836.
-
(2002)
Plant Cell
, vol.14
, pp. 2825-2836
-
-
Zhong, C.X.1
Marshall, J.B.2
Topp, C.3
Mroczek, R.4
Kato, A.5
Nagaki, K.6
|