Multiplexed detection of DNA sequences using a competitive displacement assay in a microfluidic SERRS-based device

Analytical Chemistry

Volumn 85, Issue 21, 2013, Pages 10605-10611

  Yazdi, Soroush H ^a   Giles, Kristen L ^a   White, Ian M ^a  

^a UNIVERSITY OF MARYLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MACROMOLECULE; DIFFUSION LIMITATIONS; DISPLACEMENT REACTIONS; INTEGRATED MICROSYSTEMS; MULTIPLEXED DETECTION; PLASMONIC NANOPARTICLE; SILVER NANOPARTICLES; SURFACE-ENHANCED RESONANCE RAMAN SPECTROSCOPIES;

BATCH DATA PROCESSING; BIOASSAY; FLUIDIC DEVICES; MICROPOROSITY; MULTIPLEXING; NANOPARTICLES; PROBES; SILICA; SILVER; SUBSTITUTION REACTIONS; SURFACE CHEMISTRY;

DNA SEQUENCES;

DNA; PRIMER DNA;

ARTICLE; EQUIPMENT; FLUORESCENCE MICROSCOPY; GENETICS; MICROFLUIDIC ANALYSIS; NUCLEOTIDE SEQUENCE; RAMAN SPECTROMETRY;

BASE SEQUENCE; DNA; DNA PRIMERS; MICROFLUIDIC ANALYTICAL TECHNIQUES; MICROSCOPY, FLUORESCENCE; SPECTRUM ANALYSIS, RAMAN;

EID: 84887803353     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac402744z     Document Type: Article

References (25)

1. Cao, Y. C.; Jin, R.; Mirkin, C. A. Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection Science 2002, 297, 1536-1540
2. Faulds, K.; Smith, W. E.; Graham, D. Evaluation of surface-enhanced resonance Raman scattering for quantitative DNA analysis Anal. Chem. 2004, 76, 412-417
3. Stacy, A. A.; Van Duyne, R. P. Surface enhanced raman and resonance Raman spectroscopy in a non-aqueous electrochemical environment: Tris(2,2′- bipyridine)ruthenium(II) adsorbed on silver from acetonitrile Chem. Phys. Lett. 1983, 102, 365-370
4. McNay, G.; Eustace, D.; Smith, W. E.; Faulds, K.; Graham, D. Surface-enhanced Raman scattering (SERS) and surface-enhanced resonance Raman scattering (SERRS): a review of applications Appl. Spectrosc. 2011, 65, 825-837
5. Isola, N. R.; Stokes, D. L.; Vo-Dinh, T. Surface-enhanced Raman gene probe for HIV detection Anal. Chem. 1998, 70, 1352-1356
6. Huh, Y. S.; Chung, A. J.; Cordovez, B.; Erickson, D. Enhanced on-chip SERS based biomolecular detection using electrokinetically active microwells Lab Chip 2009, 9, 433-439
7. Mahajan, S.; Richardson, J.; Brown, T.; Bartlett, P. N. SERS-melting: a new method for discriminating mutations in DNA sequences J. Am. Chem. Soc. 2008, 130, 15589-15601
8. Park, T.; Lee, S.; Seong, G. H.; Choo, J.; Lee, E. K.; Kim, Y. S.; Ji, W. H.; Hwang, S. Y.; Gweon, D.-G.; Lee, S. Highly sensitive signal detection of duplex dye-labelled DNA oligonucleotides in a PDMS microfluidic chip: confocal surface-enhanced Raman spectroscopic study Lab Chip 2005, 5, 437-442
9. Lowe, A. J.; Huh, Y. S.; Strickland, A. D.; Erickson, D.; Batt, C. A. Genotyping Utilizing Ligase Detection Reaction Coupled Surface Enhanced Raman Spectroscopy Anal. Chem. 2010, 82, 5810-5814
10. Li, J.-M.; Wei, C.; Ma, W.-F.; An, Q.; Guo, J.; Hu, J.; Wang, C.-C. Multiplexed SERS detection of DNA targets in a sandwich-hybridization assay using SERS-encoded core-shell nanospheres J. Mater. Chem. 2012, 22, 12100-12106
11. Sun, L.; Irudayaraj, J. Quantitative surface-enhanced Raman for gene expression estimation Biophys. J. 2009, 96, 4709-4716
12. Wabuyele, M. B.; Vo-Dinh, T. Detection of human immunodeficiency virus type 1 DNA sequence using plasmonics nanoprobes Anal. Chem. 2005, 77, 7810-7815
13. Faulds, K.; Fruk, L.; Robson, D. C.; Thompson, D. G.; Enright, A.; Ewen Smith, W.; Graham, D. A new approach for DNA detection by SERRS Faraday Discuss. 2006, 132, 261-268
14. Zangmeister, R. A.; Tarlov, M. J. DNA displacement assay integrated into microfluidic channels Anal. Chem. 2004, 76, 3655-3659
15. Kim, J.; Heo, J.; Crooks, R. M. Hybridization of DNA to bead-immobilized probes confined within a microfluidic channel Langmuir 2006, 22, 10130-10134
16. Kohara, Y. Hybridization Reaction Kinetics of DNA Probes on Beads Arrayed in a Capillary Enhanced by Turbulent Flow Anal. Chem. 2003, 75, 3079-3085
17. Ng, J. K.-K.; Feng, H.; Liu, W.-T. Rapid discrimination of single-nucleotide mismatches using a microfluidic device with monolayered beads Anal. Chim. Acta 2007, 582, 295-303
18. Zammatteo, N.; Alexandre, I.; Ernest, I.; Le, L.; Brancart, F.; Remacle, J. Comparison between microwell and bead supports for the detection of human cytomegalovirus amplicons by sandwich hybridization Anal. Biochem. 1997, 253, 180-189
19. Yazdi, S. H.; White, I. M. A nanoporous optofluidic microsystem for highly sensitive and repeatable surface enhanced Raman spectroscopy detection Biomicrofluidics 2012, 6, 014105
20. Yazdi, S. H.; White, I. M. Optofluidic surface enhanced Raman spectroscopy microsystem for sensitive and repeatable on-site detection of chemical contaminants Anal. Chem. 2012, 84, 7992-7998
21. Faulds, K.; Jarvis, R.; Smith, W. E.; Graham, D.; Goodacre, R. Multiplexed detection of six labelled oligonucleotides using surface enhanced resonance Raman scattering (SERRS) Analyst 2008, 133, 1505-1512
22. Driskell, J. D.; Seto, A. G.; Jones, L. P.; Jokela, S.; Dluhy, R. A.; Zhao, Y.-P.; Tripp, R. A. Rapid microRNA (miRNA) detection and classification via surface-enhanced Raman spectroscopy (SERS) Biosens. Bioelectron. 2008, 24, 923-928
23. Jarvis, R. M.; Goodacre, R. Discrimination of bacteria using surface-enhanced Raman spectroscopy Anal. Chem. 2004, 76, 40-47
24. Pearman, W. F.; Fountain, A. W. Classification of chemical and biological warfare agent simulants by surface-enhanced Raman spectroscopy and multivariate statistical techniques Appl. Spectrosc. 2006, 60, 356-365
25. Shanmukh, S.; Jones, L.; Zhao, Y.-P.; Driskell, J. D.; Tripp, R. A.; Dluhy, R. A. Identification and classification of respiratory syncytial virus (RSV) strains by surface-enhanced Raman spectroscopy and multivariate statistical techniques Anal. Bioanal. Chem. 2008, 390, 1551-1555