-
2
-
-
4344567754
-
-
Kluwer Academic Publishers: Dordrecht, The Netherlands
-
Hirata, F. Molecular Theory of Solvation; Kluwer Academic Publishers: Dordrecht, The Netherlands, 2003.
-
(2003)
Molecular Theory of Solvation
-
-
Hirata, F.1
-
3
-
-
0032968133
-
Implicit solvent models
-
Roux, B.; Simonson, T. Implicit solvent models Biophys. Chem. 1999, 78 (1-2) 1-20
-
(1999)
Biophys. Chem.
, vol.78
, Issue.12
, pp. 1-20
-
-
Roux, B.1
Simonson, T.2
-
4
-
-
84874834874
-
Evaluation of Hydration Free Energy by Level-Set Variational Implicit-Solvent Model with Coulomb-Field Approximation
-
Guo, Z. J.; Li, B.; Dzubiella, J.; Cheng, L. T.; McCammon, J. A.; Che, J. W. Evaluation of Hydration Free Energy by Level-Set Variational Implicit-Solvent Model with Coulomb-Field Approximation J. Chem. Theory Comput. 2013, 9 (3) 1778-1787
-
(2013)
J. Chem. Theory Comput.
, vol.9
, Issue.3
, pp. 1778-1787
-
-
Guo, Z.J.1
Li, B.2
Dzubiella, J.3
Cheng, L.T.4
McCammon, J.A.5
Che, J.W.6
-
5
-
-
84859249628
-
Fast Estimation of Solvation Free Energies for Diverse Chemical Species
-
Boyer, R. D.; Bryan, R. L. Fast Estimation of Solvation Free Energies for Diverse Chemical Species J. Phys. Chem. B 2012, 116 (12) 3772-3779
-
(2012)
J. Phys. Chem. B
, vol.116
, Issue.12
, pp. 3772-3779
-
-
Boyer, R.D.1
Bryan, R.L.2
-
6
-
-
84871586192
-
Ion Solvation in Liquid Mixtures: Effects of Solvent Reorganization
-
Nakamura, I.; Shi, A.-C.; Wang, Z.-G. Ion Solvation in Liquid Mixtures: Effects of Solvent Reorganization Phys. Rev. Lett. 2012, 109 (25) 257802
-
(2012)
Phys. Rev. Lett.
, vol.109
, Issue.25
, pp. 257802
-
-
Nakamura, I.1
Shi, A.-C.2
Wang, Z.-G.3
-
7
-
-
85047700350
-
Dielectric and structural results for liquid acetonitrile, acetone and chloroform from the hypernetted chain molecular integral equation
-
Fries, P. H.; Richardi, J.; Krienke, H. Dielectric and structural results for liquid acetonitrile, acetone and chloroform from the hypernetted chain molecular integral equation Mol. Phys. 1997, 90 (5) 841-854
-
(1997)
Mol. Phys.
, vol.90
, Issue.5
, pp. 841-854
-
-
Fries, P.H.1
Richardi, J.2
Krienke, H.3
-
8
-
-
0000839877
-
The solvation of ions in acetonitrile and acetone: A molecular Ornstein-Zernike study
-
Richardi, J.; Fries, P. H.; Krienke, H. The solvation of ions in acetonitrile and acetone: A molecular Ornstein-Zernike study J. Chem. Phys. 1998, 108 (10) 4079-4089
-
(1998)
J. Chem. Phys.
, vol.108
, Issue.10
, pp. 4079-4089
-
-
Richardi, J.1
Fries, P.H.2
Krienke, H.3
-
9
-
-
84879163438
-
Analysis of Biomolecular Solvation Sites by 3D-RISM Theory
-
Sindhikara, D. J.; Hirata, F. Analysis of Biomolecular Solvation Sites by 3D-RISM Theory J. Phys. Chem. B 2013, 117 (22) 6718-6723
-
(2013)
J. Phys. Chem. B
, vol.117
, Issue.22
, pp. 6718-6723
-
-
Sindhikara, D.J.1
Hirata, F.2
-
10
-
-
84862158356
-
3DRISM Multigrid Algorithm for Fast Solvation Free Energy Calculations
-
Sergiievskyi, V. P.; Fedorov, M. V. 3DRISM Multigrid Algorithm for Fast Solvation Free Energy Calculations J. Chem. Theory Comput. 2012, 8 (6) 2062-2070
-
(2012)
J. Chem. Theory Comput.
, vol.8
, Issue.6
, pp. 2062-2070
-
-
Sergiievskyi, V.P.1
Fedorov, M.V.2
-
11
-
-
79961040216
-
Toward a Universal Model to Calculate the Solvation Thermodynamics of Druglike Molecules: The Importance of New Experimental Databases
-
Palmer, D. S.; Frolov, A. I.; Ratkova, E. L.; Fedorov, M. V. Toward a Universal Model To Calculate the Solvation Thermodynamics of Druglike Molecules: The Importance of New Experimental Databases Mol. Pharm. 2011, 8 (4) 1423-1429
-
(2011)
Mol. Pharm.
, vol.8
, Issue.4
, pp. 1423-1429
-
-
Palmer, D.S.1
Frolov, A.I.2
Ratkova, E.L.3
Fedorov, M.V.4
-
12
-
-
84859623262
-
Integral Equation Theory of Molecular Solvation Coupled with Quantum Mechanical/Molecular Mechanics Method in NWChem Package
-
Chuev, G. N.; Valiev, M.; Fedorov, M. V. Integral Equation Theory of Molecular Solvation Coupled with Quantum Mechanical/Molecular Mechanics Method in NWChem Package J. Chem. Theory Comput. 2012, 8 (4) 1246-1254
-
(2012)
J. Chem. Theory Comput.
, vol.8
, Issue.4
, pp. 1246-1254
-
-
Chuev, G.N.1
Valiev, M.2
Fedorov, M.V.3
-
13
-
-
31044445657
-
A quasilinear RISM approach for the computation of solvation free energy of ionic species
-
Chuev, G. N.; Chiodo, S.; Erofeeva, S. E.; Fedorov, M. V.; Russo, N.; Sicilia, E. A quasilinear RISM approach for the computation of solvation free energy of ionic species Chem. Phys. Lett. 2006, 418 (4-6) 485-489
-
(2006)
Chem. Phys. Lett.
, vol.418
, Issue.46
, pp. 485-489
-
-
Chuev, G.N.1
Chiodo, S.2
Erofeeva, S.E.3
Fedorov, M.V.4
Russo, N.5
Sicilia, E.6
-
14
-
-
84875971160
-
A Site Density Functional Theory for Water: Application to Solvation of Amino Acid Side Chains
-
Liu, Y.; Zhao, S.; Wu, J. A Site Density Functional Theory for Water: Application to Solvation of Amino Acid Side Chains J. Chem. Theory Comput. 2013, 9 (4) 1896-1908
-
(2013)
J. Chem. Theory Comput.
, vol.9
, Issue.4
, pp. 1896-1908
-
-
Liu, Y.1
Zhao, S.2
Wu, J.3
-
15
-
-
79957593685
-
New Theoretical Method for Rapid Prediction of Solvation Free Energy in Water
-
Zhao, S.; Jin, Z.; Wu, J. New Theoretical Method for Rapid Prediction of Solvation Free Energy in Water J. Phys. Chem. B 2011, 115 (21) 6971-6975
-
(2011)
J. Phys. Chem. B
, vol.115
, Issue.21
, pp. 6971-6975
-
-
Zhao, S.1
Jin, Z.2
Wu, J.3
-
16
-
-
84864238670
-
Scalar fundamental measure theory for hard spheres in three dimensions: Application to hydrophobic solvation
-
Levesque, M.; Vuilleumier, R.; Borgis, D. Scalar fundamental measure theory for hard spheres in three dimensions: Application to hydrophobic solvation J. Chem. Phys. 2012, 137 (3) 034115
-
(2012)
J. Chem. Phys.
, vol.137
, Issue.3
, pp. 034115
-
-
Levesque, M.1
Vuilleumier, R.2
Borgis, D.3
-
17
-
-
84876058834
-
A multiscale coarse-grained polarizable solvent model for handling long tail bulk electrostatics
-
Masella, M.; Borgis, D.; Cuniasse, P. A multiscale coarse-grained polarizable solvent model for handling long tail bulk electrostatics J. Comput. Chem. 2013, 34 (13) 1112-1124
-
(2013)
J. Comput. Chem.
, vol.34
, Issue.13
, pp. 1112-1124
-
-
Masella, M.1
Borgis, D.2
Cuniasse, P.3
-
18
-
-
84874166077
-
Molecular Density Functional Theory of Water
-
Jeanmairet, G.; Levesque, M.; Vuilleumier, R.; Borgis, D. Molecular Density Functional Theory of Water J. Phys. Chem. Lett. 2013, 4 (4) 619-624
-
(2013)
J. Phys. Chem. Lett.
, vol.4
, Issue.4
, pp. 619-624
-
-
Jeanmairet, G.1
Levesque, M.2
Vuilleumier, R.3
Borgis, D.4
-
19
-
-
0034728673
-
Prediction of Properties from Simulations: Free Energies of Solvation in Hexadecane, Octanol, and Water
-
Duffy, E. M.; Jorgensen, W. L. Prediction of Properties from Simulations: Free Energies of Solvation in Hexadecane, Octanol, and Water J. Am. Chem. Soc. 2000, 122 (12) 2878-2888
-
(2000)
J. Am. Chem. Soc.
, vol.122
, Issue.12
, pp. 2878-2888
-
-
Duffy, E.M.1
Jorgensen, W.L.2
-
20
-
-
65249187748
-
Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations
-
Mobley, D. L.; Bayly, C. I.; Cooper, M. D.; Shirts, M. R.; Dill, K. A. Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations J. Chem. Theory Comput. 2009, 5 (2) 350-358
-
(2009)
J. Chem. Theory Comput.
, vol.5
, Issue.2
, pp. 350-358
-
-
Mobley, D.L.1
Bayly, C.I.2
Cooper, M.D.3
Shirts, M.R.4
Dill, K.A.5
-
21
-
-
0016352763
-
Hydrophobic Bonding and Accessible Surface-Area in Proteins
-
Chothia, C. H. Hydrophobic Bonding and Accessible Surface-Area in Proteins Nature 1974, 248 (5446) 338-339
-
(1974)
Nature
, vol.248
, Issue.5446
, pp. 338-339
-
-
Chothia, C.H.1
-
22
-
-
33750035856
-
Improved Efficiency of Replica Exchange Simulations through Use of a Hybrid Explicit/Implicit Solvation Model
-
Okur, A.; Wickstrom, L.; Layten, M.; Geney, R.; Song, K.; Hornak, V.; Simmerling, C. Improved Efficiency of Replica Exchange Simulations through Use of a Hybrid Explicit/Implicit Solvation Model J. Chem. Theory Comput. 2006, 2 (2) 420-433
-
(2006)
J. Chem. Theory Comput.
, vol.2
, Issue.2
, pp. 420-433
-
-
Okur, A.1
Wickstrom, L.2
Layten, M.3
Geney, R.4
Song, K.5
Hornak, V.6
Simmerling, C.7
-
23
-
-
38949212628
-
Treating entropy and conformational changes in implicit solvent Simulations of small molecules
-
Mobley, D. L.; Dill, K. A.; Chodera, J. D. Treating entropy and conformational changes in implicit solvent Simulations of small molecules J. Phys. Chem. B 2008, 112 (3) 938-946
-
(2008)
J. Phys. Chem. B
, vol.112
, Issue.3
, pp. 938-946
-
-
Mobley, D.L.1
Dill, K.A.2
Chodera, J.D.3
-
24
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case, D. A.; Cheatham, T. E.; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. The Amber biomolecular simulation programs J. Comput. Chem. 2005, 26 (16) 1668-1688
-
(2005)
J. Comput. Chem.
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
25
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 1983, 79 (2) 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, Issue.2
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
26
-
-
84872601727
-
Comparison of two simulation methods to compute solvation free energies and partition coefficients
-
Yang, L.; Ahmed, A.; Sandler, S. I. Comparison of two simulation methods to compute solvation free energies and partition coefficients J. Comput. Chem. 2013, 34 (4) 284-293
-
(2013)
J. Comput. Chem.
, vol.34
, Issue.4
, pp. 284-293
-
-
Yang, L.1
Ahmed, A.2
Sandler, S.I.3
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