FluoroSim: A visual problem-solving environment for fluorescence microscopy

EG VCBM 2008 - Eurographics Workshop on Visual Computing for Biomedicine

Volumn , Issue , 2008, Pages 151-158

  Quammen, Cory W ^a   Richardson, Alvin C ^a   Haase, Julian ^a   Harrison, Benjamin D ^a   Taylor II, Russell M ^a   Bloom, Kerry S ^a  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SPECIMENS; GRAPHICS PROCESSING UNIT; IMAGE FORMATION PROCESS; IMAGE TRANSFORMATIONS; POINT-SPREAD FUNCTION; PROBLEM SOLVING ENVIRONMENTS; QUALITATIVE AND QUANTITATIVE ANALYSIS; RENDERING ALGORITHMS;

COMPUTER GRAPHICS; FLUORESCENCE; MICROSCOPES; PROGRAM PROCESSORS; SIMULATORS;

FLUORESCENCE MICROSCOPY;

EID: 84887448124     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (18)

1. BOX G. E. P., MULLER M. E.: A note on the generation of random normal deviates. Annals of Mathematical Statistics 29, 2 (1958), 610-611.
2. CASTLEMAN K. R.: Digital Image Processing. Prentice-Hall, 1979.
3. FINK C., MORGAN F., LOEW L. M.: Intra-cellular fluorescent probe concentrations by confocal microscopy. Biophysical Journal 75, 4 (1998), 1648-1658.
4. GIBSON S. F., LANNI F.: Experimental test of an analytical model of aberration in an oil-immersion objective lens used in 3-d microscopy. Journal of the Optical Society of America 9, 1 (1992), 154-166.
5. GARDNER M. K., ODDE D. J., BLOOM K.: Hypothesis testing via integrated computer modeling and digital fluorescence microscopy. Methods 41, 2 (2007), 232-237.
6. LACOSTE T. D., MICHALET X., PINAUD F., CHEMLA D. S., ALIVISATOS A. P., WEISS S.: Ultrahigh-resolution multicolor colocalization of single fluorescent probes. Proc Natl Acad Sci U S A 97, 17 (2000), 9461-9466.
7. LEHMUSSOLA A., RUUSUVUORI P., SELINUMMI J., HUTTUNEN H., YLIHARJA O.: Computational framework for simulating fluorescence microscope images with cell populations. IEEE Transactions on Medical Imaging 26, 7 (July 2007), 1010-1016.
8. MCNALLY J. G., CONCHELLO J.-A.: XCOSM. http://www.omrfcosm.omrf.org/ xcosm, 2002.
9. MCNALLY J. G., KARPOVA T., COOPER J., CONCHELLO J. A.: Three-dimensional imaging by de-convolution microscopy. Methods 19, 3 (1999), 373-385.
10. MURPHY D. B.: Fundamentals of Light Microscopy and Electronic Imaging. Wiley-Liss, 2001.
11. SI H., GAERTNER K.: Meshing piecewise linear complexes by constrained Delaunay tetrahedralizations. In Proceedings of the 14th International Meshing Roundtable (Sept. 2005), pp. 147-163.
12. SHEPPARD C. J. R., GAN X., GU M., ROY M.: Signal-to-noise ratio in confocal microscopes. In Handbook of Biological Confocal Microscopy, Pawley J. B., (Ed.). Springer, 2006, pp. 442-452.
13. SPRAGUE B. L., GARDNER M. K., PEARSON C. G., MADDOX P. S., BLOOM K., SALMON E. D., ODDE D. J.: Model-convolution approach to modeling fluorescent protein dynamics. In Conference Record of the 38th Asilomar Conference on Signals, Systems and Computers (Nov. 2004), Vol. 2, IEEE, pp. 1821-1825.
14. SCHROEDER W., MARTIN K., LORENSEN B.: The Visualization Toolkit: An Object Oriented Approach to 3D Graphics, 4th ed. Prentice-Hall, 2006.
15. SPRAGUE B. L., PEARSON C. G., MADDOX P. S., BLOOM K. S., SALMON E. D., ODDE D. J.: Mechanisms of microtubule-based kinetochore positioning in the yeast metaphase spindle. Biophysical Journal 84, 6 (2003), 3529-3546.
16. TURK G.: Generating random points in triangles. In Graphics Gems, Glassner A., (Ed.). Academic Press, 1990, pp. 24-28.
17. TZENG S., WEI L.-Y.: Parallel white noise generation on a GPU via cryptographic hash. In I3D '08: Proceedings of the 2008 Symposium on Interactive 3D Graphics and Games (2008).
18. YEH E., HAASE J., PALIULIS L. V., JOGLEKAR A., BOND L., BOUCK D., SALMON E. D., BLOOM K. S.: Pericentric chromatin is organized into an intramolecular loop in mitosis. Current Biology 18, 2 (2008), 81-90.