Pyrosequencing analysis of bench-scale nitrifying biofilters removing trihalomethanes

Environmental Engineering Science

Volumn 30, Issue 9, 2013, Pages 582-588

  Gomez Alvarez, Vicente ^a   Schrantz, Karen A ^a   Pressman, Jonathan G ^a   Speitel, Gerald E ^b   Wahman, David G ^a  

^a U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^b The University of Texas at Austin   (United States)

Author keywords

trihalomethanes counts fig count count="4" table count count="1" ref count count="34" page count count="7"

Indexed keywords

454-PYROSEQUENCING; AMMONIA OXIDIZING BACTERIA; AMMONIA-OXIDIZING ARCHAEA; BACTERIAL COMMUNITY; DRINKING WATER SYSTEMS; OPERATING CONDITION; OPERATIONAL TAXONOMIC UNITS; TRIHALOMETHANES;

AMMONIA; BACTERIA; EFFLUENTS; NITRIFICATION; NITROGEN;

BIOFILTERS;

DRINKING WATER; TRIHALOMETHANE;

AMMONIA OXIDIZING ARCHAEON; AMMONIA OXIDIZING BACTERIUM; ARTICLE; BIOFILM; BIOFILTER; DNA ISOLATION; MICROBIAL COMMUNITY; NITROBACTER; NITROSOMONAS; NITROSOMONAS OLIGOTROPHA; NONHUMAN; NUCLEOTIDE SEQUENCE; PYROSEQUENCING; QUALITY CONTROL;

EID: 84887364077     PISSN: 10928758     EISSN: 15579018     Source Type: Journal    
DOI: 10.1089/ees.2013.0043     Document Type: Article

References (34)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSIBLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389. AWWA Water Quality and Technology Division Disinfection
2. AWWA Water Quality and Technology Division Disinfection Systems Committee. (2008). Committee report: Disinfection survey, part 1-Recent changes, current practices, and water quality. J. Am. Water Works Assoc. 100, 76.
3. Berthouex, P.M., and Brown, L.C. (2002). Statistics for Environmental Engineers. Boca Raton: Lewis Publishers.
4. Clarke, K.R. (1993). Non-parametric multivariate analyses of changes in community structure. Aust. J. Ecol. 18, 117.
5. Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., Kulam-Syed-Mohideen, A.S., McGarrell, D.M., Marsh, T., Garrity, G.M., and Tiedje, J.M. (2009). The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141.
6. Edgar, R.C., Haas, B.J., Clemente, J.C., Quince, C., and Knight, R.(2011). UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194.
7. Fairey, J.L., Speitel, G.E., and Katz, L.E. (2007). Monochloramine destruction by GAC: Effect of activated carbon type and source water characteristics. J. Am. Water Works Assoc. 99, 110.
8. French, E., Kozlowski, J.A., Mukherjee, M., Bullerjahn, G., and Bollmann, A. (2012). Ecophysiological characterization of ammonia-oxidizing archaea and bacteria from freshwater. Appl. Environ. Microbiol. 78, 5773.
9. Gantner, S., Andersson, A.F., Alonso-Saez, L., and Bertilsson, S.(2011). Novel primers for 16S rRNA-based archaeal community analyses in environmental samples. J. Microbiol. Methods 84, 12.
10. Hammer, O., Harper, D.A.T., and Ryan, P.D. (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontolo. Electron. 4, 1.
11. Harter, H.L. (1960). Tables of range and studentized range. Ann. Math. Stat. 31, 1122.
12. Hatzenpichler, R. (2012). Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Appl. Environ. Microbiol. 78, 7501.
13. Hill, T.C.J., Walsh, K.A., Harris, J.A., and Moffett, B.F. (2003). Using ecological diversity measures with bacterial communities. FEMS Microbiol. Ecol. 43, 1.
14. Kasuga, I., Nakagaki, H., Kurisu, F., and Furumai, H. (2010). Predominance of ammonia-oxidizing archaea on granular activated carbon used in a full-scale advanced drinking water treatment plant. Water Res. 44, 5039.
15. Kim, Y.-J., Nguyen, N.-L., Weon, H.-Y., and Yang, D.-C. (2012). Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field and emended descriptions of the genus Sediminibacterium and Sediminibacterium salmoneum. Int. J. Syst. Evol. Microbiol. 63 (Pt 3), 905.
16. Manem, J.A., and Rittmann, B.E. (1990). Scaling procedure for biofilm processes. Water Sci. Technol. 22, 329.
17. Morris, C.E., Bardin, M., Berge, O., Frey-Klett, P., Fromin, N., Girardin, H., Guinebretiere, M.-H., Lebaron, P., Thiery, J.M., and Troussellier, M. (2002). Microbial biodiversity: Approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999. Microbiol. Mol. Biol. Rev. 66, 592.
18. Regan, J.M., Cho, A.-Y., Kim, S., and Smith, C.D. (2007). Monitoring Ammonia-Oxidizing Bacteria in Chloraminated Distribution Systems. Denver, CO: AWWA Research Foundation.
19. Rittmann, B., Regan, J.M., and Stahl, D.A. (1994). Nitrification as a source of soluble organic substrate in biological treatment. Water Sci. Technol. 30, 1.
20. Schloss, P.D., Gevers, D., and Westcott, S.L. (2011). Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE 6, e27310.
21. Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., Lesniewski, R.A., Oakley, B.B., Parks, D.H., Robinson, C.J., Sahl, J.W., Stres, B., Thallinger, G.G., Van Horn, D.J., and Weber, C.F. (2009). Introducing MOTHUR: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537.
22. Speitel, G.E., Jr., Bayer, B.M., and Kannappan, R. (2010). Significance of Trihalomethanes in Preventing Distribution System Nitrification in Chloraminated Waters. Denver, CO: Water Research Foundation.
23. Symons, J.M., AWWA, and US EPA. (1982). Treatment Techniques for Controlling Trihalomethanes in Drinking Water. Denver, CO: American Water Works Association.
24. Tamura, K., Nei, M., and Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. U. S. A. 101, 11030.
25. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731.
26. van der Wielen, P.W.J.J., Voost, S., and van der Kooij, D. (2009). Ammonia-oxidizing bacteria and archaea in groundwater treatment and drinking water distribution systems. Appl. Environ. Microbiol. 75, 4687.
27. Wahman, D.G., Henry, A.E., Katz, L.E., and Speitel, G.E., Jr. (2006a). Cometabolism of trihalomethanes by mixed culture nitrifiers. Water Res. 40, 3349.
28. Wahman, D.G., Katz, L.E., and Speitel, G.E., Jr. (2005). Cometabolism of trihalomethanes by Nitrosomonas europaea. Appl. Environ. Microbiol. 71, 7980.
29. Wahman, D.G., Katz, L.E., and Speitel, G.E., Jr. (2006b). Trihalomethane cometabolism by a mixed-culture nitrifying biofilter. J. Am. Water Works Assoc. 98, 2.
30. Wahman, D.G., Katz, L.E., and Speitel, G.E., Jr. (2007). Modeling of trihalomethane cometabolism in nitrifying biofilters. Water Res. 41, 449.
31. Wahman, D.G., Katz, L.E., and Speitel, G.E., Jr. (2011a). Performance and biofilm activity of nitrifying biofilters removing trihalomethanes. Water Res. 45, 1669.
32. Wahman, D.G., Kirisits, M.J., Katz, L.E., and Speitel, G.E., Jr.(2011b). Ammonia-oxidizing bacteria in biofilters removing trihalomethanes are related to Nitrosomonas oligotropha. Appl. Environ. Microbiol. 77, 2537.
33. White, C.P., DeBry, R.W., and Lytle, D.A. (2012). Microbial survey of a full-scale, biologically active filter for treatment of drinking water. Appl. Environ. Microbiol. 78, 6390.
34. Wright, E.S., Yilmaz, L.S., and Noguera, D.R. (2012). DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Appl. Environ. Microbiol. 78, 717.