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Volumn 9, Issue 10, 2013, Pages

Ten Simple Rules for Reproducible Computational Research

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL RESEARCHES; SIMPLE++;

EID: 84887264733     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003285     Document Type: Editorial
Times cited : (540)

References (25)
  • 1
    • 82755174118 scopus 로고    scopus 로고
    • Addressing scientific fraud
    • Crocker J, Cooper ML, (2011) Addressing scientific fraud. Science 334: 1182.
    • (2011) Science , vol.334 , pp. 1182
    • Crocker, J.1    Cooper, M.L.2
  • 2
    • 84856197539 scopus 로고    scopus 로고
    • Data replication & reproducibility. Again, and again, and again. Introduction
    • Jasny BR, Chin G, Chong L, Vignieri S, (2011) Data replication & reproducibility. Again, and again, and again. Introduction. Science 334: 1225.
    • (2011) Science , vol.334 , pp. 1225
    • Jasny, B.R.1    Chin, G.2    Chong, L.3    Vignieri, S.4
  • 3
    • 82755174123 scopus 로고    scopus 로고
    • Reproducible research in computational science
    • Peng RD, (2011) Reproducible research in computational science. Science 334: 1226-1227.
    • (2011) Science , vol.334 , pp. 1226-1227
    • Peng, R.D.1
  • 4
    • 75649122581 scopus 로고    scopus 로고
    • Computer science. Accessible reproducible research
    • Mesirov JP, (2010) Computer science. Accessible reproducible research. Science 327: 415-416.
    • (2010) Science , vol.327 , pp. 415-416
    • Mesirov, J.P.1
  • 5
    • 84865226981 scopus 로고    scopus 로고
    • Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
    • Nekrutenko A, Taylor J, (2012) Next-generation sequencing data interpretation: enhancing reproducibility and accessibility. Nat Rev Genet 13: 667-672.
    • (2012) Nat Rev Genet , vol.13 , pp. 667-672
    • Nekrutenko, A.1    Taylor, J.2
  • 7
    • 79953329158 scopus 로고    scopus 로고
    • Retractions in the scientific literature: is the incidence of research fraud increasing?
    • Steen RG, (2011) Retractions in the scientific literature: is the incidence of research fraud increasing? J Med Ethics 37: 249-253.
    • (2011) J Med Ethics , vol.37 , pp. 249-253
    • Steen, R.G.1
  • 8
    • 80055088241 scopus 로고    scopus 로고
    • Believe it or not: how much can we rely on published data on potential drug targets?
    • Prinz F, Schlange T, Asadullah K, (2011) Believe it or not: how much can we rely on published data on potential drug targets? Nat Rev Drug Discov 10: 712.
    • (2011) Nat Rev Drug Discov , vol.10 , pp. 712
    • Prinz, F.1    Schlange, T.2    Asadullah, K.3
  • 9
    • 84859169880 scopus 로고    scopus 로고
    • Drug development: raise standards for preclinical cancer research
    • Begley CG, Ellis LM, (2012) Drug development: raise standards for preclinical cancer research. Nature 483: 531-533.
    • (2012) Nature , vol.483 , pp. 531-533
    • Begley, C.G.1    Ellis, L.M.2
  • 12
    • 0042745638 scopus 로고    scopus 로고
    • The LONI Pipeline Processing Environment
    • Rex DE, Ma JQ, Toga AW, (2003) The LONI Pipeline Processing Environment. Neuroimage 19: 1033-1048.
    • (2003) Neuroimage , vol.19 , pp. 1033-1048
    • Rex, D.E.1    Ma, J.Q.2    Toga, A.W.3
  • 13
    • 10244255212 scopus 로고    scopus 로고
    • Taverna: a tool for the composition and enactment of bioinformatics workflows
    • Oinn T, Addis M, Ferris J, Marvin D, Senger M, et al. (2004) Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20: 3045-3054.
    • (2004) Bioinformatics , vol.20 , pp. 3045-3054
    • Oinn, T.1    Addis, M.2    Ferris, J.3    Marvin, D.4    Senger, M.5
  • 14
    • 36248970413 scopus 로고    scopus 로고
    • Sharing detailed research data is associated with increased citation rate
    • doi:10.1371/journal.pone.0000308
    • Piwowar HA, Day RS, Fridsma DB, (2007) Sharing detailed research data is associated with increased citation rate. PLoS ONE 2: e308 doi:10.1371/journal.pone.0000308.
    • (2007) PLoS ONE , vol.2
    • Piwowar, H.A.1    Day, R.S.2    Fridsma, D.B.3
  • 18
    • 29644434815 scopus 로고    scopus 로고
    • Pegasus: a framework for mapping complex scientific workflows onto distributed systems
    • Deelman E, Singh G, Su M-H, Blythe J, Gil Y, et al. (2005) Pegasus: a framework for mapping complex scientific workflows onto distributed systems. Scientific Programming Journal 13: 219-237.
    • (2005) Scientific Programming Journal , vol.13 , pp. 219-237
    • Deelman, E.1    Singh, G.2    Su, M.-H.3    Blythe, J.4    Gil, Y.5
  • 19
    • 0242529706 scopus 로고    scopus 로고
    • Sweave: dynamic generation of statistical reports using literate data analysis
    • In: Härdle W, Rönz B, editors. Heidelberg, Germany: Physika Verlag
    • Leisch F (2002) Sweave: dynamic generation of statistical reports using literate data analysis. In: Härdle W, Rönz B, editors. Compstat: proceedings in computational statistics. Heidelberg, Germany: Physika Verlag. pp. 575-580.
    • (2002) Compstat: Proceedings in computational statistics , pp. 575-580
    • Leisch, F.1
  • 20
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks J, Nekrutenko A, Taylor J, (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86.
    • (2010) Genome Biol , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 21
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365-371.
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5
  • 22
    • 0037246058 scopus 로고    scopus 로고
    • ArrayExpress-a public repository for microarray gene expression data at the EBI
    • Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, et al. (2003) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31: 68-71.
    • (2003) Nucleic Acids Res , vol.31 , pp. 68-71
    • Brazma, A.1    Parkinson, H.2    Sarkans, U.3    Shojatalab, M.4    Vilo, J.5
  • 23
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 24
    • 84891658571 scopus 로고    scopus 로고
    • GigaDB: announcing the GigaScience database
    • Sneddon TP, Li P, Edmunds SC, (2012) GigaDB: announcing the GigaScience database. Gigascience 1: 11.
    • (2012) Gigascience , vol.1 , pp. 11
    • Sneddon, T.P.1    Li, P.2    Edmunds, S.C.3
  • 25
    • 84872007657 scopus 로고    scopus 로고
    • Ten simple rules for the open development of scientific software
    • doi:10.1371/journal.pcbi.1002802
    • Prlić A, Procter JB, (2012) Ten simple rules for the open development of scientific software. PLoS Comput Biol 8: e1002802 doi:10.1371/journal.pcbi.1002802.
    • (2012) PLoS Comput Biol , vol.8
    • Prlić, A.1    Procter, J.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.