Investigation of the relationship between the metabolic profile of tobacco leaves in different planting regions and climate factors using a pseudotargeted method based on gas chromatography/mass spectrometry

Journal of Proteome Research

Volumn 12, Issue 11, 2013, Pages 5072-5083

  Zhao, Yanni ^a   Zhao, Chunxia ^a   Lu, Xin ^a   Zhou, Huina ^b   Li, Yanli ^a   Zhou, Jia ^a   Chang, Yuwei ^a   Zhang, Junjie ^a   Jin, Lifeng ^b   Lin, Fucheng ^b   Xu, Guowang ^a  

^a DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

^b ZHENGZHOU TOBACCO RESEARCH INSTITUTE OF CNTC   (China)

Author keywords

climate; GC MS; metabolic profiling; metabolomics; pseudotargeted; tobacco leaf

Indexed keywords

AMINO ACID; CARBOHYDRATE; FRUCTOSE; LEUCINE; PHENYLALANINE; RAIN; SUCROSE; TREHALOSE; TYROSINE;

ACCURACY; ARTICLE; CITRIC ACID CYCLE; CLIMATE; DROUGHT; ENVIRONMENTAL TEMPERATURE; MASS FRAGMENTOGRAPHY; METABOLITE; NONHUMAN; PLANT LEAF; PLANT METABOLISM; PRIORITY JOURNAL; REPRODUCIBILITY; TOBACCO;

AMINO ACIDS; CARBOHYDRATES; CHINA; CITRIC ACID CYCLE; CLIMATE; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GEOGRAPHY; LEAST-SQUARES ANALYSIS; METABOLOME; METABOLOMICS; TOBACCO;

EID: 84887254254     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400799a     Document Type: Article

References (48)

1. Thielen, A.; Klus, H.; Muller, L. Tobacco smoke: unraveling a controversial subject Exp. Toxicol. Pathol. 2008, 60 (2-3) 141-156
2. Yan, K. Y.; Wang, J. M.; Qu, J. B.; Li, X. B. Correlation between smoking quality and physical/chemical parameters of flue-cured tobacco in Henan province Tob. Sci. Technol. 2001, 10, 5-9
3. Smeeton, B. W. Genetic control of tabacco quality Recent Adv. Tob. Sci. 1987, 13, 3-26
4. Zhu, Z. Q. The usability of taobacco leaf and safety of cigarette Tob. Sci. Technol. 2000, 8, 3-6
5. Zhang, J. T.; Zhang, Y.; Du, Y. Y.; Chen, S. Y.; Tang, H. R. Dynamic metabonomic responses of tobacco (Nicotiana tabacum) plants to salt stress J. Proteome Res. 2011, 10 (4) 1904-1914
6. Rizhsky, L.; Liang, H. J.; Mittler, R. The combined effect of drought stress and heat shock on gene expression in tobacco Plant Physiol. 2002, 130 (3) 1143-1151
7. Yoshimura, K.; Miyao, K.; Gaber, A.; Takeda, T.; kanaboshi, H.; Miyasaka, H.; Shigeoka, S. Enhancement of stress tolerance in transgenic tobacco plants overexpressing Chlamydomonas glutathione peroxidase in chloroplasts or cytosol Plant J. 2004, 37 (1) 21-33
8. Li, Y.; Pang, T.; Guo, Z. M.; Li, Y. L.; Wang, X. L.; Deng, J. H.; Zhong, K. J.; Lu, X.; Xu, G. W. Accelerated solvent extraction for GC-based tobacco fingerprinting and its comparison with simultaneous distillation and extraction Talanta 2010, 81 (1-2) 650-656
9. Miyagawa, Y.; Tamoi, M.; Shigeoka, S. Overexpression of a cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase in tobacco enhances photosynthesis and growth Nat. Biotechnol. 2001, 19 (10) 965-969
10. Almeida, A. M.; Villalobos, E.; Araújo, S. S.; Leyman, B.; Dijck, P.; Alfaro-Cardoso, L.; Fevereiro, P. S.; Torné, J. M.; Santos, D. M. Transformation of tobacco with an Arabidopsis thaliana gene involved in trehalose biosynthesis increases tolerance to several abiotic stresses Euphytica 2005, 146 (1-2) 165-176
11. Li, Q. H.; Zhao, C. X.; Li, Y.; Chang, Y. W.; Wu, Z. M.; Pang, T.; Lu, X.; Wu, Y.; Xu, G. W. Liquid chromatography/mass spectrometry-based metabolic profiling to elucidate chemical differences of tobacco leaves between Zimbabwe and China J. Sep. Sci. 2011, 34 (2) 119-126
12. Zhang, L.; Wang, X. Y.; Guo, J. H.; Xia, Q. L.; Zhao, G.; Zhou, H. N.; Xie, F. W. Metabolic profiling of chinese tobacco leaf of different geographical origins by GC-MS J. Agric. Food Chem. 2013, 61 (11) 2597-2605
13. Fiehn, O.; Kopka, J.; Dörmann, P.; Altmann, T.; Trethewey, R. N.; Willmitze, L. Metabolite profiling for plant functional genomics Nat. Biotechnol. 2000, 18 (11) 1157-1161
14. Fiehn, O. Metabolomics-the link between genotypes and phenotypes Plant Mol. Biol. 2002, 48 (1-2) 155-171
15. Weckwerth, W.; Loureiro, M. E.; Wenzel, K.; Fiehn, O. Differential metabolic networks unravel the effects of silent plant phenotypes Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (20) 7809-7814
16. Zhou, J.; Zhang, L.; Chang, Y. W.; Lu, X.; Zhu, Z.; Xu, G. W. Alteration of leaf metabolism in Bt-transgenic rice (Oryza sativa L.) and its wild type under insecticide stress J. Proteome Res. 2012, 11 (8) 4351-4360
17. Li, Y.; Pang, T.; Li, Y. L.; Wang, X. L.; Li, Q. H.; Lu, X.; Xu, G. W. Gas chromatography-mass spectrometric method for metabolic profiling of tobacco leaves J. Sep. Sci. 2011, 34 (12) 1447-1454
18. Chang, Y. W.; Zhao, C. X.; Zhu, Z.; Wu, Z. M.; Zhou, J.; Zhao, Y. N.; Lu, X.; Xu, G. W. Metabolic profiling based on LC/MS to evaluate unintended effects of transgenic rice with cry1Ac and sck genes Plant Mol. Biol. 2012, 78 (4-5) 477-487
19. Tureckova, V.; Novak, O.; Strnad, M. Profiling ABA metabolites in Nicotiana tabacum L. leaves by ultra-performance liquid chromatography- electrospray tandem mass spectrometry Talanta 2009, 80 (1) 390-399
20. Nian, H. J.; Meng, Q. C.; Zhang, W.; Chen, L. M. Overexpression of the formaldehyde dehydrogenase gene from Brevibacillus brevis to enhance formaldehyde tolerance and detoxification of tobacco Appl. Biochem. Biotechnol. 2013, 169 (1) 170-180
21. Roessner, U.; Luedemann, A.; Brust, D.; Fiehn, O.; Linke, T.; Willmitzer, L.; Fernie, A. R. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems Plant Cell 2001, 13 (1) 11-29
22. Pinto, R. C.; Gerber, L.; Eliasson, M.; Sundberg, B.; Trygg, J. Strategy for minimizing between-study variation of large-scale phenotypic experiments using multivariate analysis Anal. Chem. 2012, 84 (20) 8675-8681
23. Stamova, B. S.; Roessner, U.; Suren, S.; Laudencia-Chingcuanco, D.; Bacic, A.; Beckles, D. M. Metabolic profiling of transgenic wheat over-expressing the high-molecular-weight Dx5 glutenin subunit Metabolomics 2008, 5 (2) 239-252
24. Ossipov, V.; Ossipova, S.; Bykov, V.; Oksanen, E.; Koricheva, J.; Haukioja, E. Application of metabolomics to genotype and phenotype discrimination of birch trees grown in a long-term open-field experiment Metabolomics 2007, 4 (1) 39-51
25. Wu, L. J.; Liu, W.; Cao, J. L.; Li, Q. Q.; Huang, Y.; Min, S. G. Analysis of the aroma components in tobacco using combined GC-MS and AMDIS Anal. Methods 2013, 5 (5) 1259-1263
26. Koh, Y.; Pasikanti, K. K.; Yap, C. W.; Chan, E. C. Comparative evaluation of software for retention time alignment of gas chromatography/time-of-flight mass spectrometry-based metabonomic data J. Chromatogr., A 2010, 1217 (52) 8308-8316
27. Kind, T.; Wohlgemuth, G.; Lee, D. Y.; Lu, Y.; Palazoglu, M.; Shahbaz, S.; Fiehn, O. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry Anal. Chem. 2009, 81 (24) 10038-10048
28. Li, Y.; Ruan, Q.; Li, Y. L.; Ye, G. Z.; Lu, X.; Lin, X. H.; Xu, G. W. A novel approach to transforming a non-targeted metabolic profiling method to a pseudo-targeted method using the retention time locking gas chromatography/mass spectrometry-selected ions monitoring J. Chromatogr., A 2012, 1255, 228-236
29. Xi, Y. X.; Wei, C. Y.; Song, J. Z.; Zhou, H. P.; Liu, Y.; Guo, w. m.; Zhang, S. X. Content variance of some chemical components in flue-cured tobacco of different flavor styles Tob. Sci. Technol. 2011, 5, 29-33
30. Westerhuis, J. A.; Hoefsloot, H. C. J.; Smit, S.; Vis, D. J.; Smilde, A. K.; Velzen, E. J. J.; Duijnhoven, J. P. M.; Dorsten, F. A. Assessment of PLSDA cross validation Metabolomics 2008, 4 (1) 81-89
31. Xia, J. G.; Psychogios, N.; Young, N.; Wishart, D. S. MetaboAnalyst: a web server for metabolomic data analysis and interpretation Nucleic Acids Res. 2009, 37, W652-W660
32. Saeed, A. I.; Sharov, V.; White, J.; Li, J.; Liang, W.; Bhagabati, N.; Braisted, J.; Klapa, M.; Currier, T.; Thiagarajan, M.; Sturn, A.; Snuffin, M.; Rezantsev, A.; Popov, D.; Ryltsov, A.; Kostukovich, E.; Borisovsky, I.; Liu, Z.; Vinsavich, A.; Trush, V.; Quackenbush, J. TM4: A free, open-source system for microarray data management and analysis Biotechniques 2003, 34 (2) 374-378
33. Junker, B. H.; Klukas, C.; Schreiber, F. VANTED: a system for advanced data analysis and visualization in the context of biological networks BMC Bioinf. 2006, 7, 109-121
34. Smith, C. A.; Want, E. J.; O'Maille, G.; Abagyan, R.; Siuzdak, G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, aatching, and identification Anal. Chem. 2006, 78, 779-787
35. Muniz-Marquez, D. B.; Martinez-Avila, G. C.; Wong-Paz, J. E.; Belmares-Cerda, R.; Rodriguez-Herrera, R.; Aguilar, C. N. Ultrasound-assisted extraction of phenolic compounds from Laurus nobilis L. and their antioxidant activity Ultrason. Sonochem. 2013, 20 (5) 1149-1154
36. Zhou, J.; Zhang, L.; Li, X.; Chang, Y. W.; Gu, Q.; Lu, X.; Zhu, Z.; Xu, G. W. Metabolic profiling of transgenic rice progeny using gas chromatography-mass spectrometry: the effects of gene insertion, tissue culture and breeding Metabolomics 2011, 8 (4) 529-539
37. Fiehn, O.; Wohlgemuth, G.; Scholz, M.; Kind, T.; Lee do, Y.; Lu, Y.; Moon, S.; Nikolau, B. Quality control for plant metabolomics: reporting MSI-compliant studies Plant J. 2008, 53 (4) 691-704
38. Hoekstra, F. A.; Golovina, E. A.; Buitink, J. Mechanisms of plant desiccation tolerance Trends Plant Sci. 2001, 6, 431-438
39. Urano, K.; Maruyama, K.; Ogata, Y.; Morishita, Y.; Takeda, M.; Sakurai, N.; Suzuki, H.; Saito, K.; Shibata, D.; Kobayashi, M.; Yamaguchi-Shinozaki, K.; Shinozaki, K. Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics Plant J. 2009, 57 (6) 1065-1078
40. Ingram, J.; Bartels, D. The molecular basis of dehydration tolerance in plants Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996, 47, 377-403
41. Sharma, S. S.; Dietz, K. J. The significance of amino acids and amino acid-derived molecules in plant responses and adaptation to heavy metal stress J. Exp. Bot. 2006, 57 (4) 711-726
42. Bowne, J. B.; Erwin, T. A.; Juttner, J.; Schnurbusch, T.; Langridge, P.; Bacic, A.; Roessner, U. Drought responses of leaf tissues from wheat cultivars of differing drought tolerance at the metabolite level Mol. Plant 2012, 5 (2) 418-429
43. Rani, P. U.; Pratyusha, S. Defensive role of Gossypium hirsutum L. anti-oxidative enzymes and phenolic acids in response to Spodoptera litura F. feeding J. Asia-Pac. Entomol. 2013, 16 (2) 131-136
44. Sweetlove, L. J.; Beard, K. F.; Nunes-Nesi, A.; Fernie, A. R.; Ratcliffe, R. G. Not just a circle: flux modes in the plant TCA cycle Trends Plant Sci. 2010, 15 (8) 462-470
45. Hodges, M. Enzyme redundancy and the importance of 2-oxoglutarate in plant ammonium assimilation J. Exp. Bot. 2002, 53 (370) 905-916
46. Blokhina, O.; Virolainen, E.; Fagerstedt, K. V. Antioxidants, oxidative damage and oxygen deprivation stress: a review Ann. Bot. 2003, 91, 179-194
47. Lisko, J. G.; Stanfill, S. B.; Duncan, B. W.; Watson, C. H. Application of GC-MS/MS for the analysis of tobacco alkaloids in cigarette filler and various tobacco species Anal. Chem. 2013, 85 (6) 3380-3384
48. Zhou, Z. Y.; Ding, X. D.; Li, X. F.; Xiao, J. X. The effect of drought stredd on yield and chemical components in Yunyan87 Acta Agric. Univ. Jiangxiensis 2012, 34 (2) 226-231