A Short Guide to Common Heterotrophic Flagellates of Freshwater Habitats Based on the Morphology of Living Organisms

Protist

Volumn 164, Issue 6, 2013, Pages 842-860

  Jeuck, Alexandra ^a   Arndt, Hartmut ^a  

^a UNIVERSITY OF COLOGNE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MASTIGOPHORA (FLAGELLATES);

FRESH WATER;

ARTICLE; CLASSIFICATION; CYTOLOGY; ECOSYSTEM; EQUIPMENT; EUKARYOTE; HETEROTROPHY; LIMNOLOGY; METABOLISM; METHODOLOGY; PARASITOLOGY;

ECOSYSTEM; EUKARYOTA; FRESH WATER; FRESHWATER BIOLOGY; HETEROTROPHIC PROCESSES;

EID: 84887184248     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2013.08.003     Document Type: Article

References (53)

1. Adl S.M., Simpson A.G.B., Lane C.E., Lukes J., Bass D., Bowser S.S., Brown M.W., Burki F., Dunthorn M., Hampl V., Heiss A., Hoppenrath M., Lara E., Le Gall L., Lynn D.H., McManus H., Mitchell E.A.D., Mozley-Stanridge S.E., Parfrey L.W., Pawlowski J., Rueckert S., Shadwick L., Schoch C.L., Smirnov A., Spiegel F. The revised classification of eukaryotes. J Eukaryot Microbiol 2012, 59:429-493.
2. Alegado R.A., Brown L.W., Cao S., Dermenjian R.K., Zuzow R., Fairclough S.R., Clardy J., King N. A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals. eLIFE 2012, 1:e00013.
3. Arndt H., Mathes J. Large heterotrophic flagellates form a significant part of protozooplankton biomass in lakes and rivers. Ophelia 1991, 33:225-234.
4. Arndt H., Dietrich D., Auer B., Cleven E., Gräfenhan T., Weitere M., Mylnikov A. Functional Diversity of Heterotrophic Flagellates in Aquatic Ecosystems. The Flagellates 2000, 240-268. Taylor & Francis, London. B.S.C. Leadbeater, J.C. Green (Eds.).
5. Azam F., Fenchel T., Field J.G., Gray J.S., Meyer-Reil L.A., Thingstad F. The ecological role of water-column microbes in the sea. Mar Ecol Prog Ser 1983, 10:257-263.
6. Bass D., Howe A.D., Mylnikov A.P., Vickerman K., Chao E.E., Smallbone J.E., Snell J., Cabral Jr C, Cavalier-Smith T. Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov. Protist 2009, 160:483-521.
7. Bird D.F., Kalff J. Bacterial grazing by planktonic lake algae. Science 1986, 231:493-495.
8. Boehme A., Risse-Buhl U., Kuesel K. Protists with different feeding modes change biofilm morphology. Microb Ecol 2009, 69:158-169.
9. Boenigk J., Arndt H. Bacterivory by heterotrophic flagellates: community structure and feeding strategies. Antonie van Leeuwenhoek 2002, 81:465-480.
10. Bonkowski M. Protozoa and plant growth: the microbial loop in soil. New Phytol 2004, 162:617-631.
11. Børsheim K.Y., Bratbak G. Cell volume to cell carbon conversion factors for a bacterivorous Monas sp. enriched from seawater. Mar Ecol Prog Ser 1987, 36:171-175.
12. Brabender M., Kiss A.K., Domonell A., Nitsche F., Arndt Phylogenetic and morphological diversity of novel soil cercomonad species with a description of two new genera (Nucleocercomonas and Metabolomonas). Protist 2012, 163:495-528.
13. Caron D.A. Technique for enumeration of heterotrophic and phototrophic nanoplankton, using epifluorescence microscopy, and comparison with other procedures. Appl Environ Microbiol 1983, 46:491-498.
14. Cavalier-Smith T., Chao E.E. Phylogeny and evolution of Apusomonadida (Protozoa: Apusozoa): New genera and species. Protist 2010, 161:549-576.
15. Choi J.W., Stoecker D.K. Effects of fixation on cell volume of marine planktonic protozoa. Appl Environ Microbiol 1989, 55:1761-1765.
16. Christoffersen K., Nybroe O., Jürgens K., Hansen M. Measurement of bacterivory by heterotrophic nanoflagellates using immunofluorescence labelling of ingested cells. Aquat Microb Ecol 1997, 13:127-134.
17. Dayel M.J., Alegado R.A., Fairclough S.R., Levin T.C., Nichols S.A., McDonald K., King N. Cell differentiation and morphogenesis in the colony-forming choanoflagellate Salpingoeca rosetta. Dev Biol 2011, 357:73-78.
18. Fenchel T. Ecology of Protozoa. The Biology of Free-living Phagotrophic Protists 1987, Science Tech Publishers/Springer Verlag, Madison/Wisconsin, Berlin.
19. Fenchel T. Flagellate Design and Function. The Biology of Free-living Heterotrophic Flagellates 1991, 7-19. Clarendon Press, Oxford. D.J. Patterson, J. Larsen (Eds.).
20. Foissner W., Berger H. A user-friendly guide to the ciliates (Protozoa, Ciliophora) commonly used by hydrobiologists as bioindicators in rivers, lakes, and waste waters, with notes on their ecology. Freshw Biol 1996, 35:375-482.
21. Gasol J.M. Benthic flagellates and ciliates in fine freshwater sediments: Calibration of a live counting procedure and estimation of their abundances. Microb Ecol 1993, 25:247-262.
22. Güde H. Grazing by protozoa as selection factor for activated sludge bacteria. Microb Ecol 1979, 5:225-237.
23. Hausmann K., Hülsmann N., Radek R. Protistology 2003, Schweizerbart Science Publishers, Stuttgart. 3rd ed.
24. Jones R.I. Mixotrophy in planktonic protists: an overview. Freshw Biol 2000, 45:219-226.
25. Jürgens K., Matz C. Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria. Antonie van Leeuwenhoek 2002, 81:413-434.
26. Karpov S.A., Bass D., Mylnikov A.P., Cavalier-Smith T. Molecular phylogeny of Cercomonadidae and kinetid patterns of Cercomonas and Eocercomonas gen. nov. (Cercomonadida, Cercozoa). Protist 2006, 157:125-158.
27. Kim E., Archibald J.M. Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. nov. Protist 2013, 164:160-182.
28. The Flagellates 2000, Taylor & Francis, London. B.S.C. Leadbeater, J.C. Green (Eds.).
29. An Illustrated Guide to the Protozoa 2000, Allen Press, Lawrence, Kansas. Second edition. J.L. Lee, G. Leedale, P. Bradburry (Eds.).
30. Massana R., Güde H. Comparison between three methods for determining flagellate abundance in natural waters. Ophelia 1991, 33:197-203.
31. Nauwerck A. Die Beziehungen zwischen Zooplankton und Phytoplankton im See Erken. Symb Bot Ups 1963, 17(5):1-163.
32. Patterson D.J., Hedley S. Free-living Freshwater Protozoa. A Colour Guide 1992, Wolfe Publishing, London.
33. The Biology of Free-living Heterotrophic Flagellates 1991, Clarendon Press, Oxford. D.J. Patterson, J. Larsen (Eds.).
34. Pawlowski J., Christen R., Lecroq B., Bachar D., Shahbazkia H.R., Amaral-Zettler L., Guillou L. Eukaryotic richness in the abyss: Insights from Pyrotag Sequencing. PLoS One 2011, 6:e18169.
35. Pawlowski J., Audic S., Adl S., Bass D., Belbahri L., Berney C., Bowser S.S., Cepicka I., Decelle J., Dunthorn M., Fiore-Donno A.M., Gile G.H., Holzmann M., Jahn R., Jirku M., Keeling P.J., Kostka M., Kudryavtsev A., Lara E., Lukes J., Mann D.G., Mitchell E.A.D., Nitsche F., Romeralo M., Saunders G.W., Simpson A.G.B., Smirnov A.V., Spouge J.L., Stern R.F., Stoeck T., Zimmermann J., Schindel D., de Vargas C. CBOL Protist Working Group: Barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol 2012, 10:e1001419.
36. Pernthaler J. Predation on prokaryotes in the water column and its ecological implications. Nature Rev Microbiol 2005, 3:537-546.
37. Porter K.G., Feig Y.S. The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 1980, 25:943-948.
38. Prosdocimi E.M., Novati S., Bruno R., Bandi C., Mulatto P., Giannico R., Casiraghi M., Ferri E. Errors in ribosomal sequence datasets generated using PCR-coupled 'panbacterial' pyrosequencing, and the establishment of an improved approach. Mol Cell Probes 2013, 27:65-67.
39. Sanders R.W. Mixotrophic protists in marine and freshwater ecosystems. J Eukaryot Microbiol 1991, 38:76-81.
40. Sanders R.W., Porter K.G., Bennett S.J., DeBiase A.E. Seasonal patterns of bacterivory by flagellates, ciliates, rotifers, and cladocerans in a freshwater planctonic community. Limnol Oceanogr 1989, 34:673-687.
41. Scheckenbach F., Wylezich C., Mylnikov A.P., Weitere M., Arndt H. Molecular comparisons of freshwater and marine isolates of the same morphospecies of heterotrophic flagellates. Appl Environ Microbiol 2006, 72:6638-6643.
42. Scherwass A., Fischer Y., Arndt H. Detritus as a potential food source for protozoans: consumption and digestion of plant detritus by a heterotrophic flagellate (Chilomonas paramecium) and a ciliate (Tetrahymena pyriformis). Aquat Ecol 2005, 39:439-445.
43. Sherr E.B. Direct use of high molecular weight polysaccharide by heterotrophic flagellates. Nature 1988, 335:348-351.
44. Sherr B.F., Sherr E.B. Enumeration of heterotrophic microprotozoa by epifluorescence microscopy. Estuar Coast Shelf Sci 1983, 16:1-7.
45. Sherr E.B., Sherr B.F. Bacterivory and herbivory: Key roles of phagotrophic protists in pelagic food webs. Microb Ecol 1994, 28:223-235.
46. Sherr B.F., Sherr E.B., Pedros-Alio C. Simultaneous measurement of bacterioplankton production and protozoan bacterivory in estuarine water. Mar Ecol Prog Ser 1989, 54:209-219.
47. Sonntag B., Posch T., Psenner R. Comparison of three methods for determining flagellate abundance, cell size, and biovolume in cultures and natural freshwater samples. Arch Hydrobiol 2000, 149:337-351.
48. Stoeck T., Bass D., Nebel M., Christen R., Jones M.D.M., Breiner H.-W., Richards T.A. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol 2010, 19:21-31.
49. Stoupin D., Kiss A.K., Arndt H., Shatilovich A.V., Gilichinsky D.A., Nitsche F. Cryptic diversity within the choanoflagellate morphospecies complex Codosiga botrytis - Phylogeny and morphology of ancient and modern isolates. Eur J Protistol 2012, 48:263-273.
50. Utermöhl H. Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitt Int Verein Limnol 1958, 9:1-38.
51. Wilken S., Huisman J., Naus-Wiezer, Van Donk E. Mixotrophic organisms become more heterotrophic with rising temperature. Ecol Lett 2013, 16:225-233.
52. Will K.W., Rubinoff D. Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 2004, 20:47-55.
53. Zhukov B.F. Atlas of Freshwater Heterotrophic Flagellates (Biology, Ecology, Taxonomy) [in Russian] 1993, Russian Academy of Sciences, Institute of the Biology of Inland Waters.