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Volumn 5, Issue 2, 2013, Pages 283-291

Architecture of the Lsm1-7-Pat1 Complex: A Conserved Assembly in Eukaryotic mRNA Turnover

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL RNA; MESSENGER RNA; PROTEIN LSM1; PROTEIN LSM2; PROTEIN LSM3; PROTEIN LSM4; PROTEIN LSM5; PROTEIN LSM6; PROTEIN LSM7; PROTEIN PAT1; SACCHAROMYCES CEREVISIAE PROTEIN; UNCLASSIFIED DRUG; CAP BINDING PROTEIN; PAT1 PROTEIN, S CEREVISIAE; PROTEIN BINDING; RECOMBINANT PROTEIN; RNA BINDING PROTEIN;

EID: 84887017746     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2013.10.004     Document Type: Article
Times cited : (65)

References (41)
  • 1
    • 0033569743 scopus 로고    scopus 로고
    • A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation invitro
    • Achsel T., Brahms H., Kastner B., Bachi A., Wilm M., Lührmann R. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation invitro. EMBO J. 1999, 18:5789-5802.
    • (1999) EMBO J. , vol.18 , pp. 5789-5802
    • Achsel, T.1    Brahms, H.2    Kastner, B.3    Bachi, A.4    Wilm, M.5    Lührmann, R.6
  • 2
    • 0035957394 scopus 로고    scopus 로고
    • The Sm domain is an ancient RNA-binding motif with oligo(U) specificity
    • Achsel T., Stark H., Lührmann R. The Sm domain is an ancient RNA-binding motif with oligo(U) specificity. Proc. Natl. Acad. Sci. USA 2001, 98:3685-3689.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3685-3689
    • Achsel, T.1    Stark, H.2    Lührmann, R.3
  • 5
    • 0034599976 scopus 로고    scopus 로고
    • A Sm-like protein complex that participates in mRNA degradation
    • Bouveret E., Rigaut G., Shevchenko A., Wilm M., Séraphin B. A Sm-like protein complex that participates in mRNA degradation. EMBO J. 2000, 19:1661-1671.
    • (2000) EMBO J. , vol.19 , pp. 1661-1671
    • Bouveret, E.1    Rigaut, G.2    Shevchenko, A.3    Wilm, M.4    Séraphin, B.5
  • 7
  • 9
    • 52949141485 scopus 로고    scopus 로고
    • Lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay invivo
    • Chowdhury A., Tharun S. lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay invivo. RNA 2008, 14:2149-2158.
    • (2008) RNA , vol.14 , pp. 2149-2158
    • Chowdhury, A.1    Tharun, S.2
  • 10
    • 34250804009 scopus 로고    scopus 로고
    • The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs
    • Chowdhury A., Mukhopadhyay J., Tharun S. The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs. RNA 2007, 13:998-1016.
    • (2007) RNA , vol.13 , pp. 998-1016
    • Chowdhury, A.1    Mukhopadhyay, J.2    Tharun, S.3
  • 11
    • 84859978033 scopus 로고    scopus 로고
    • Both Sm-domain and C-terminal extension of Lsm1 are important for the RNA-binding activity of the Lsm1-7-Pat1 complex
    • Chowdhury A., Raju K.K., Kalurupalle S., Tharun S. Both Sm-domain and C-terminal extension of Lsm1 are important for the RNA-binding activity of the Lsm1-7-Pat1 complex. RNA 2012, 18:936-944.
    • (2012) RNA , vol.18 , pp. 936-944
    • Chowdhury, A.1    Raju, K.K.2    Kalurupalle, S.3    Tharun, S.4
  • 13
    • 35948951960 scopus 로고    scopus 로고
    • Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae
    • Decker C.J., Teixeira D., Parker R. Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. J.Cell Biol. 2007, 179:437-449.
    • (2007) J.Cell Biol. , vol.179 , pp. 437-449
    • Decker, C.J.1    Teixeira, D.2    Parker, R.3
  • 17
    • 0034741815 scopus 로고    scopus 로고
    • The yeast cytoplasmic LsmI/Pat1p complexprotects mRNA 3' termini from partial degradation
    • He W., Parker R. The yeast cytoplasmic LsmI/Pat1p complexprotects mRNA 3' termini from partial degradation. Genetics 2001, 158:1445-1455.
    • (2001) Genetics , vol.158 , pp. 1445-1455
    • He, W.1    Parker, R.2
  • 18
    • 76449106188 scopus 로고    scopus 로고
    • Integration, scaling, space-group assignment and post-refinement
    • Kabsch W. Integration, scaling, space-group assignment and post-refinement. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:133-144.
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.66 , pp. 133-144
    • Kabsch, W.1
  • 19
    • 0033524941 scopus 로고    scopus 로고
    • Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs
    • Kambach C., Walke S., Young R., Avis J.M., de la Fortelle E., Raker V.A., Lührmann R., Li J., Nagai K. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 1999, 96:375-387.
    • (1999) Cell , vol.96 , pp. 375-387
    • Kambach, C.1    Walke, S.2    Young, R.3    Avis, J.M.4    de la Fortelle, E.5    Raker, V.A.6    Lührmann, R.7    Li, J.8    Nagai, K.9
  • 20
    • 79957601559 scopus 로고    scopus 로고
    • Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis
    • Leung A.K.W., Nagai K., Li J. Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis. Nature 2011, 473:536-539.
    • (2011) Nature , vol.473 , pp. 536-539
    • Leung, A.K.W.1    Nagai, K.2    Li, J.3
  • 21
    • 84855394456 scopus 로고    scopus 로고
    • RNA-related nuclear functionsof human Pat1b, the P-body mRNA decay factor
    • Marnef A., Weil D., Standart N. RNA-related nuclear functionsof human Pat1b, the P-body mRNA decay factor. Mol. Biol. Cell 2012, 23:213-224.
    • (2012) Mol. Biol. Cell , vol.23 , pp. 213-224
    • Marnef, A.1    Weil, D.2    Standart, N.3
  • 24
    • 81355148453 scopus 로고    scopus 로고
    • Structure of the LSm657 complex: an assembly intermediate of the LSm1-7 and LSm2-8 rings
    • Mund M., Neu A., Ullmann J., Neu U., Sprangers R. Structure of the LSm657 complex: an assembly intermediate of the LSm1-7 and LSm2-8 rings. J.Mol. Biol. 2011, 414:165-176.
    • (2011) J.Mol. Biol. , vol.414 , pp. 165-176
    • Mund, M.1    Neu, A.2    Ullmann, J.3    Neu, U.4    Sprangers, R.5
  • 25
    • 77956540817 scopus 로고    scopus 로고
    • Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms
    • Nissan T., Rajyaguru P., She M., Song H., Parker R. Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms. Mol. Cell 2010, 39:773-783.
    • (2010) Mol. Cell , vol.39 , pp. 773-783
    • Nissan, T.1    Rajyaguru, P.2    She, M.3    Song, H.4    Parker, R.5
  • 26
    • 77956642517 scopus 로고    scopus 로고
    • Human Pat1b connects deadenylation with mRNA decapping and controls the assembly of processing bodies
    • Ozgur S., Chekulaeva M., Stoecklin G. Human Pat1b connects deadenylation with mRNA decapping and controls the assembly of processing bodies. Mol. Cell. Biol. 2010, 30:4308-4323.
    • (2010) Mol. Cell. Biol. , vol.30 , pp. 4308-4323
    • Ozgur, S.1    Chekulaeva, M.2    Stoecklin, G.3
  • 27
    • 38949151861 scopus 로고    scopus 로고
    • Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping
    • Pilkington G.R., Parker R. Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping. Mol. Cell. Biol. 2008, 28:1298-1312.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 1298-1312
    • Pilkington, G.R.1    Parker, R.2
  • 28
    • 63649099704 scopus 로고    scopus 로고
    • Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution
    • Pomeranz Krummel D.A., Oubridge C., Leung A.K.W., Li J., Nagai K. Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution. Nature 2009, 458:475-480.
    • (2009) Nature , vol.458 , pp. 475-480
    • Pomeranz Krummel, D.A.1    Oubridge, C.2    Leung, A.K.W.3    Li, J.4    Nagai, K.5
  • 29
    • 0032862988 scopus 로고    scopus 로고
    • Spliceosomal U snRNP core assembly: Sm proteins assemble onto an Sm site RNA nonanucleotide in a specific and thermodynamically stable manner
    • Raker V.A., Hartmuth K., Kastner B., Lührmann R. Spliceosomal U snRNP core assembly: Sm proteins assemble onto an Sm site RNA nonanucleotide in a specific and thermodynamically stable manner. Mol. Cell. Biol. 1999, 19:6554-6565.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 6554-6565
    • Raker, V.A.1    Hartmuth, K.2    Kastner, B.3    Lührmann, R.4
  • 30
    • 67650445667 scopus 로고    scopus 로고
    • Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast
    • Reijns M.A.M., Auchynnikava T., Beggs J.D. Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast. FEBS J. 2009, 276:3602-3617.
    • (2009) FEBS J. , vol.276 , pp. 3602-3617
    • Reijns, M.A.M.1    Auchynnikava, T.2    Beggs, J.D.3
  • 31
    • 0033564627 scopus 로고    scopus 로고
    • Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
    • Salgado-Garrido J., Bragado-Nilsson E., Kandels-Lewis S., Séraphin B. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 1999, 18:3451-3462.
    • (1999) EMBO J. , vol.18 , pp. 3451-3462
    • Salgado-Garrido, J.1    Bragado-Nilsson, E.2    Kandels-Lewis, S.3    Séraphin, B.4
  • 33
    • 84884971938 scopus 로고    scopus 로고
    • Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions
    • Sharif H., Ozgur S., Sharma K., Basquin C., Urlaub H., Conti E. Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions. Nucleic Acids Res. 2013, 41:8377-8390.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 8377-8390
    • Sharif, H.1    Ozgur, S.2    Sharma, K.3    Basquin, C.4    Urlaub, H.5    Conti, E.6
  • 34
    • 79956117132 scopus 로고    scopus 로고
    • Lsm1-7-Pat1 complex: a link between 3' and 5'-ends in mRNA decay?
    • Tharun S. Lsm1-7-Pat1 complex: a link between 3' and 5'-ends in mRNA decay?. RNA Biol. 2009, 6:228-232.
    • (2009) RNA Biol. , vol.6 , pp. 228-232
    • Tharun, S.1
  • 35
    • 0035930337 scopus 로고    scopus 로고
    • Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs
    • Tharun S., Parker R. Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs. Mol. Cell 2001, 8:1075-1083.
    • (2001) Mol. Cell , vol.8 , pp. 1075-1083
    • Tharun, S.1    Parker, R.2
  • 37
    • 20444429430 scopus 로고    scopus 로고
    • Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection
    • Tharun S., Muhlrad D., Chowdhury A., Parker R. Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection. Genetics 2005, 170:33-46.
    • (2005) Genetics , vol.170 , pp. 33-46
    • Tharun, S.1    Muhlrad, D.2    Chowdhury, A.3    Parker, R.4
  • 38
    • 78649722117 scopus 로고    scopus 로고
    • The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique
    • Totaro A., Renzi F., La Fata G., Mattioli C., Raabe M., Urlaub H., Achsel T. The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique. Nucleic Acids Res. 2011, 39:635-647.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 635-647
    • Totaro, A.1    Renzi, F.2    La Fata, G.3    Mattioli, C.4    Raabe, M.5    Urlaub, H.6    Achsel, T.7
  • 39
    • 78650273324 scopus 로고    scopus 로고
    • Functional organization of the Sm core in the crystal structure of human U1 snRNP
    • Weber G., Trowitzsch S., Kastner B., Lührmann R., Wahl M.C. Functional organization of the Sm core in the crystal structure of human U1 snRNP. EMBO J. 2010, 29:4172-4184.
    • (2010) EMBO J. , vol.29 , pp. 4172-4184
    • Weber, G.1    Trowitzsch, S.2    Kastner, B.3    Lührmann, R.4    Wahl, M.C.5
  • 40
    • 28544442127 scopus 로고    scopus 로고
    • Eukaryotic Lsm proteins: lessons from bacteria
    • Wilusz C.J., Wilusz J. Eukaryotic Lsm proteins: lessons from bacteria. Nat. Struct. Mol. Biol. 2005, 12:1031-1036.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 1031-1036
    • Wilusz, C.J.1    Wilusz, J.2
  • 41
    • 18144402771 scopus 로고    scopus 로고
    • Reconstitution of two recombinant LSm protein complexes reveals aspects of their architecture, assembly, and function
    • Zaric B., Chami M., Rémigy H., Engel A., Ballmer-Hofer K., Winkler F.K., Kambach C. Reconstitution of two recombinant LSm protein complexes reveals aspects of their architecture, assembly, and function. J.Biol. Chem. 2005, 280:16066-16075.
    • (2005) J.Biol. Chem. , vol.280 , pp. 16066-16075
    • Zaric, B.1    Chami, M.2    Rémigy, H.3    Engel, A.4    Ballmer-Hofer, K.5    Winkler, F.K.6    Kambach, C.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.