Genetic structure of Ipomoea imperati (Convolvulaceae) in the Mediterranean region and implications for its conservation

Phytotaxa

Volumn 141, Issue 1, 2013, Pages 40-54

  Cennamo, P ^a   Del Guacchio, E ^b   Paino, L ^c   De Castro, O ^c   Menale, B ^c   Vazquez Torres, M ^d   Caputo, P ^c  

^a Universita degli Studi Suor Orsola Benincasa   (Italy)

^b Bagnolifutura SpA   (Italy)

^c UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^d UNIVERSIDAD VERACRUZANA   (Mexico)

Author keywords

Chloroplast DNA microsatellites; Ipomoea imperati; ITS sequences; Mediterranean region

Indexed keywords

EID: 84886852509     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.141.1.3     Document Type: Article

References (85)

1. Aceto, S., Caputo, P., Cozzolino, S., Gaudio, L. & Moretti, A. (1999) Phylogeny and evolution of Orchis and allied genera based on ITS DNA variation: morphological gaps and molecular continuity. Molecular Phylogenetics and Evolution 13: 67-76. http://dx. doi. org/10. 1006/mpev. 1999. 0628.
2. Akaike, H. (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723. http://dx. doi. org/10. 1109/tac. 1974. 1100705.
3. Austin, D. F., Kitajima, K., Yoneda, Y. & Qian, L. (2001) A putative American plant, Ipomoea nil (Convolvulaceae) in pre-Columbian Japanese art. Economic Botany 55: 515-527. http://dx. doi. org/10. 1007/bf02871714.
4. Bandelt, H. J., Forster, P. & Röhl, A. (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16: 37-48. http://dx. doi. org/10. 1093/oxfordjournals. molbev. a026036.
5. Bell, C. D., Soltis, D. E. & Soltis, P. E. (2010) The age and diversification of the angiosperms re-revisited. American Journal of Botany 97: 1296-1303. http://dx. doi. org/10. 3732/ajb. 0900346.
6. Bremer, K. (1994) Branch support and tree stability. Cladistics 10: 295-304. http://dx. doi. org/10. 1111/j. 1096-0031. 1994. tb00179. x.
7. Brown, R. (1810) Prodromus floræ Novæ Hollandiæ et Insulæ Van-Diemen: exhibens characteres plantarum quas annis 1802-1805. Typis R. Taylor et socii, London, 590 pp.
8. Brown, R. (1818) Narrative of an expedition to explore the river Zaire, usually called the Congo, in South Africa, in 1816, under the direction of Captain J. K. Tuckey, R. N. To which is added, The journal of Professor Smith. J. Murray, London, 498 pp.
9. Coates, G., Jackson, J. B. C., Collins, L. S., Cronin, T. M., Dowsett, J., Bybell, L. M., Jorge, P. J. & Recope, A. O. (1992) Closure of the isthmus of Panama: the near-shore marine record of Costa Rica and western Panama. Geological Society of America Bulletin 104: 814-828. http://dx. doi. org/10. 1130/0016-7606(1992)104%3C0814: cotiop%3E2. 3. co; 2.
10. Conti, F., Abbate, G., Alessandrini, A. & Blasi, C. (Eds) (2005) An annotated Checklist of the Italian Vascular Flora. Palombi Editori, Roma, 420 pp.
11. Dalechamps, J. (1586) Historia generalis Plantarum. Lyon, 1940 pp.
12. Doyle, J. J. & Doyle, J. L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
13. Drummond, A. J., Ho, S. Y. W., Phillips, M. J. & Rambaut, A. (2006) Relaxed phylogenetics and dating with confidence. PLOS Biology 4: 699-71. http://dx. doi. org/10. 1371/journal. pbio. 0040088.
14. Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1. 7. Molecular Biology and Evolution 29: 1969-1973. http://dx. doi. org/10. 1093/molbev/mss075.
15. Excoffier, L., Smouse, P. E. & Quattro, J. M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
16. Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin (version 3. 0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
17. Fang, R. & Staples, G. (1995) In Flora of China. Wu ZY and Raven PT, 16: 271-325.
18. Felsenstein, J. (1985) PHYLIP (Phylogeny Inference Package) version 3. 52c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
19. Friis, E. M., Crane, P. R. & Pedersen, K. R. (2011) Early Flowers and Angiosperm. Cambridge University Press, Cambridge, 600pp.
20. Gmelin, J. F. (1791) Systema naturae per regna tria naturae, secundum classes, ordines, genera, species, cum charecteribus, differentiis, synonymis, loci. Tomus II. Editio decimal tertia, aucta, reformata. Impensis Georg. Emanuel. Beer, Lipsiae, 884pp.
21. Goldstein, D. G. & Pollock, D. D. (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. The Journal of Heredity 88: 335-342. http://dx. doi. org/10. 1093/oxfordjournals. jhered. a023114.
22. Goloboff, P. (1999) Nona. Instruction manual. Published by the author, S. M. de Tucumán, Argentina.
23. Gray, A. (1862) Characters of New or Obscure Species of Plants of Monopetalous Orders in the Collection of the United States South Pacific Exploring Expedition under Captain Charles Wilkes, U. S. N. With occasional Remarks, & c. Proceedings of the American Academy of Arts and Sciences 5: 321-352. http://dx. doi. org/10. 2307/20021271.
24. Greuter, W., Burdet, H. M. & Long, G. (1986) Med-Checklist: A critical inventory of vascular plants of the circum-Mediterranean countries, 3. Dicotyledones (Convolvulaceae-Labiatae). Conservatoire et JardinBotanique, Ville de Genève, Genève & Berlin, 395pp.
25. Grisebach, A. (1866) Catalogus plantarum cubensium. Lipsiae, 309 pp.
26. Gunn, C. R. & Dennis, J. V. (1976) World guide to tropical Drift Seeds and Fruits. Fitzhenry and Whiteside, Toronto, 240 pp.
27. Guppy, H. B. (1917) Plants, seeds and currents in the West Indies and Azores. William and Norgate, London, 531 pp.
28. Hall, T. A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
29. Hallier, H. (1893) Versuch einer natürlichen Gliederung der Convolvulaceen auf morphologischer und anatomischer Grundlage. Botanische Jahrbücher für Systematik, Pflanzengeshichte und Pflanzengeographie 16: 453-591.
30. House, H. D. (1921) Necessary changes of certain plant names. New York State Museum Bulletin 223: 60-69.
31. Huttunen, S., Hedenäs, L., Ignatov, M. S., Devos, N. & Vanderpoorten, A. (2008) Origin and evolution of the northern hemisphere disjunction in the moss genus Homalothecium (Brachytheciaceae). American Journal of Botany 95: 720-730. http://dx. doi. org/10. 3732/ajb. 2007407.
32. Imperato, F. (1599) Historia naturale. Libro vigesimo ottavo. Napoli, 791pp.
33. Imperato, F. (1672) Historia naturale. Libro vigesimo ottavo, 2. Giovanni Maria Ferro, Venezia, 696 pp.
34. Ishii, T., Takahashi, C., Ikeda, N., Kamijima, O. & Mori, N. (2006) Mitochondrial microsatellite variability in common wheat and its ancestral species. Genes and Genetic Systems 81: 211-214.
35. Jarne, P. & Lagoda, P. J. L. (1996) Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution 11: 424-430. http://dx. doi. org/10. 1016/0169-5347(96)10049-5.
36. Judd, F. W., Lonard, R. I. & Sides, S. L. (1977) The vegetation of South Padre Island, Texas, in relation to Topography. Southwestern Naturalist 22: 31-48. http://dx. doi. org/10. 2307/3670462.
37. Judd, F. W. & Sides, S. L. (1983) The effect of Hurricane Allen on the nearshore vegetation of South Padre Island. Southwestern Naturalist 28: 365-369. http://dx. doi. org/10. 2307/3670799.
38. Käss, E. & Wink, M. (1997) Phylogenetic relationships of the Papilionoideae (Family Leguminosae) based on nucleotide sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2). Molecular Phylogenetics and Evolution 8: 65-88. http://dx. doi. org/10. 1006/mpev. 1997. 0410.
39. Kay, K. M., Whittall J. B. & Hodges S. A. (2006) A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology 6: 36.
40. Knevel, I. C. (2001) The life history of selected coastal for e dune species of South Africa. PhD Thesis Rhodes University, Grahamstown, Z. A.
41. Koch, M. A., Dobes, C. & Mitchell-Olds, T. (2003) Multiple hybrid formation in natural populations: concerted evolution of the Internal Transcribed Spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Molecular Biology and Evolution 20: 338-350. http://dx. doi. org/10. 1093/molbev/msg046.
42. Koga, K., Kadono, Y. & Setoguchi, H. (2008) Phylogeography of Japanese water crowfoot based on chloroplast DNA haplotypes. Aquatic Botany 89: 1-8. http://dx. doi. org/10. 1016/j. aquabot. 2007. 12. 012.
43. La Valva, V. & Sabato, S. (1983) Nomenclature and typification of Ipomoea imperati (Convolvulacea). Taxon 32: 110-132.
44. Levinson, G. & Gutman, G. A. (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Molecular Biology and Evolution 4: 203-221.
45. Linnaeus, C. (1753) Species plantarum. Impensis Laurentii Salvii, Stockholm, 1200 pp.
46. Lonard, I. & Judd, W. F. (1999) The biological flora of coastal dunes and wetlands. Ipomoea imperati (Vahl) Griseb. Journal of Coastal Research 15(3): 645-652.
47. Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209-220.
48. McDonald, A. (1991) Origin and diversity of Mexican Convolvulaceae. Anales del Instituto de Biológia de la Universidad Nacional Autónoma de México, Série Botánica 62: 65-82.
49. Migliorato, E. (1896) Osservazioni relative alla flora napoletana. Bollettino della Società Botanica Italiana. 7: 168-171.
50. Miller, K. G. & Fairbanks, R. G. (1983) Evidence for Oligocene-Middle Miocene abyssal circulation changes in the western North Atlantic. Nature 306: 250-253. http://dx. doi. org/10. 1038/306250a0.
51. Miller, R. E. & Rausher, M. D. (1999) Phylogenetic Systematics of Ipomoea (Convolvulaceae) Based on ITS and Waxy Sequences. Systematic Botany 24: 209-227. http://dx. doi. org/10. 2307/2419549.
52. Millspaugh, C. F. (1900) Plantae utowanae. Field Columbian Museum. Botanical series 2(1): 3-110.
53. Milne, R. I. & Abbott, R. J. (2002) The origin and evolution of Tertiary relict floras. Advances in Botanical Research 38: 281-314. http://dx. doi. org/10. 1016/s0065-2296(02)38033-9.
54. Muir, G., Fleming, C. C. & Schlötterer, C. (2001) Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Molecular Biology and Evolution 18: 112-119. http://dx. doi. org/10. 1093/oxfordjournals. molbev. a003785.
55. Muir, G. & Schlötterer, C. (2005) Evidence for shared ancestral polymorphism rather than recurrent gene flow at microsatellite loci differentiating two hybridizing oaks (Quercus spp.). Molecular Ecology 14: 549-61. http://dx. doi. org/10. 1111/j. 1365-294x. 2004. 02418. x.
56. Muller, J. (1981) Fossil pollen records of extant angiosperms. Botanical Review 47: 1-142. http://dx. doi. org/10. 1007/bf02860537.
57. Namoff, S., Luke, Q., Jimènez, E. F., Veloz, A., Lewis, C. L., Sosa, V., Maunder, M. & Ortega, J. F. (2010) Phylogenetic analyses of nucleotide sequences confirm a unique plant intercontinental disjunction between tropical Africa, the Caribbean, and the Hawaiian Islands. Journal of Plant Research 123: 57-65. http://dx. doi. org/10. 1007/s10265-009-0258-0.
58. Nixon, K. C. (1999) Winclada (beta) ver. 0. 9. 9. Published by the author, Ithaca, New York.
59. Paape, T., Igic, B., Smith, S. D., Olmstead, R., Bohs, L. & Kohn, J. R. (2008) A 15 Myr-Old Genetic Bottleneck. Molecular Biology and Evolution 25: 655-663. http://dx. doi. org/10. 1093/molbev/msn016.
60. Petagna, V. (1787) Institutiones botanicae. Napoli, 815 pp.
61. Posada, D. & Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinforma 14: 817-818. http://dx. doi. org/10. 1093/bioinformatics/14. 9. 817.
62. Provan, J., Powell, W. & Hollingsworth, P. M. (2001) Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends in Ecology and Evolution 16: 142-147. http://dx. doi. org/10. 1016/s0169-5347(00)02097-8.
63. Rambaut, A. & Drummond, A. J. (2007) Tracer v1. 4. Available from: http://beast. bio. ed. ac. uk/Tracer.
64. Rauwolf, L. (1582) Augentliche beschreibung der Raiss inn die Morgenlanderin. Franckfurt Rabe, Franckfurt, 487pp.
65. Renner, L. (2004) Plant dispersal across the tropical Atlantic by wind and sea currents. International Journal of Plant Sciences 165: 23-33. http://dx. doi. org/10. 1086/383334.
66. Reynolds, J., Weir, B. S. & Cockerham, C. C. (1983) Estimation for the coancestry coefficient: basis for a short-term genetic distance. Genetics 105: 767-779.
67. Ricciardi, M. (1998) Flora di Capri (Golfo di Napoli). Annali di Botanica 54: 7-169. http://dx. doi. org/10. 1080/00837792. 2004. 10670763.
68. Ricciardi, M., Nazzaro, R., Caputo, G., De Natale, A. & Vallariello, G. (2004) La flora dell'isola d'Ischia (Golfo di Napoli). Webbia 59: 1: 113. http://dx. doi. org/10. 1080/00837792. 2004. 10670763.
69. Roth, A. W. (1797) Catalecta botanica quibus plantae novae et minus cognitae describuntur atque illustrantur. Vol 1. I. G. Müller, Lipsiae, 244 pp.
70. Silvestre, S. (2012) In: Flora iberica Plantas vasculares de la Península Ibérica e Islas Baleares. Castroviejo S, Valdes Bermejo E. (eds.), Real Jardin Botànico-C. S. I. C, Madrid 11: 284-286. http://dx. doi. org/10. 1002/fedr. 19870981109.
71. Slatkin, M. (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
72. Smouse, P. E., & Long, J. C. (1992) Matrix correlation analysis in Anthropology and Genetics. American Journal of Physical Anthropology 35: 187-213. http://dx. doi. org/10. 1002/ajpa. 1330350608.
73. Stefanovic, S. A., Krueger, L. & Olmstead, R. G. (2002) Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci. American Journal of Botany 89: 1510-1522. http://dx. doi. org/10. 3732/ajb. 89. 9. 1510.
74. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Symposium Series 22: 4673-4680. http://dx. doi. org/10. 1093/nar/22. 22. 4673.
75. Thorne, J. L., Kischino, H. & Painter, I. S. (1998) Estimating the rate of evolution of the rate of molecular evolution. Molecular Biology and Evolution 15: 1647-1657. http://dx. doi. org/10. 1093/oxfordjournals. molbev. a025892.
76. Thorne, J. L. & Kischino, H. (2002) Divergence time estimation and rate evolution with multi locus data sets. Systematic Biology 51: 689-702.
77. Tiffney, B. H. (1985) The Eocene North Atlantic land bridge: its importance_in Tertiary and modern phytogeography of the Northern Hemisphere. Journal of the Arnold Arboretum 66: 243-273.
78. Turrisi, R. E. (2001) Ipomoea imperati (Vahl) Griseb. (Convolvulaceae), nouvelle entité pour la flore sicilienne. Flora Mediterranea 11: 373-378.
79. Turrisi, R. E. (2007) Importanza della conservazione in situ delle popolazioni di Ipomoea imperati (Vahl) Grisebach (Convolvulaceae) della Sicilia. Bollettino dell'Accademia Gioenia di Scienze Naturali 40: 141-148.
80. USDA (2012) ARS, National Genetic Resources Program. Germplasm Resources Information Network-(GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland. Available from: URL: http://www. ars-grin. gov/cgi-bin/npgs/html/taxon. pl?406425 (Accessed 15 October 2012).
81. Vahl, M. (1790) Symbolae batanicae. Copenaghen, 470 pp.
82. Wandeler, P., Hoeck, P. E. & Keller, L. F. (2007) Back to the future: museum specimens in population genetics. Trends in Ecology and Evolution 22: 634-642. http://dx. doi. org/10. 1016/j. tree. 2007. 08. 017.
83. Weising, K. & Gardner, R. C. (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of Dicotyledonous Angiosperms. Genome 42: 9-19. http://dx. doi. org/10. 1139/gen-42-1-9.
84. Wilson, I. J. & Balding, D. J. (1998) Geneological inference from microsatellite data. Genetics 150: 499-510.
85. Xiang, Q. Y., Manchester, S. R., Thomas, D. T., Zhang, W. & Fan, C. (2005) Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration. Evolution 59: 1685-1700. http://dx. doi. org/10. 1111/j. 0014-3820. 2005. tb01818. x.