MicroRNA expression profiling reveals the potential function of microRNA-31 in chordomas

Journal of Neuro-Oncology

Volumn 115, Issue 2, 2013, Pages 143-151

  Bayrak, Omer Faruk ^a   Gulluoglu, Sukru ^a   Aydemir, Esra ^a   Ture, Ugur ^a   Acar, Hasan ^c   Atalay, Basar ^a   Demir, Zeynel ^a   Sevli, Serhat ^a   Creighton, Chad J ^d   Ittmann, Michael ^d,e   Sahin, Fikrettin ^a   Ozen, Mustafa ^b,d  

^a YEDITEPE UNIVERSITY   (Turkey)

^b ISTANBUL UNIVERSITY   (Turkey)

^c Selcuklu Medical School   (Turkey)

^d BAYLOR COLLEGE OF MEDICINE   (United States)

^e MICHAEL E DEBAKEY VETERANS AFFAIRS MEDICAL CENTER   (United States)

Author keywords

Chordoma; hsa miR 31; Microarray; miRNA; Nucleus pulposus; Skull base

Indexed keywords

MICRORNA; MICRORNA 140; MICRORNA 148A; MICRORNA 222; MICRORNA 31; RADIXIN; SCATTER FACTOR RECEPTOR; UNCLASSIFIED DRUG;

APOPTOSIS; ARTICLE; CARCINOGENESIS; CELL LEVEL; CHORDOMA; CONTROLLED STUDY; EUKARYOTE; GENE CONTROL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE MUTATION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; HUMAN TISSUE; MOLECULAR MECHANICS; MOLECULAR PATHOLOGY; NOTOCHORD; NUCLEUS PULPOSUS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA FINGERPRINTING; RNA ISOLATION; RNA SEQUENCE; SKULL BASE; TRANSCRIPTION REGULATION; TUMOR CELL; TUMOR GROWTH;

APOPTOSIS; CASE-CONTROL STUDIES; CELL PROLIFERATION; CHORDOMA; FLOW CYTOMETRY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SKULL BASE NEOPLASMS; TUMOR CELLS, CULTURED; TUMOR MARKERS, BIOLOGICAL;

EID: 84886592023     PISSN: 0167594X     EISSN: 15737373     Source Type: Journal    
DOI: 10.1007/s11060-013-1211-6     Document Type: Article

References (30)

1. Almefty K, Pravdenkova S, Colli BO, Al-Mefty O, Gokden M (2007) Chordoma and chondrosarcoma: similar, but quite different, skull base tumors. Cancer 110:2457-2467. doi: 10.1002/cncr.23073
2. Clabeaux J, Hojnowski L, Valente A, Damron TA (2008) Case report: parachordoma of soft tissues of the arm. Clin Orthop Relat Res 466:1251-1256. doi: 10.1007/s11999-008-0125-7
3. Wright D (1967) Nasopharyngeal and cervical chordoma-some aspects of their development and treatment. J Laryngol Otol 81:1337-1355
4. Yu SL, Chen HY, Chang GC et al (2008) MicroRNA signature predicts survival and relapse in lung cancer. Cancer Cell 13:48-57. doi: 10.1016/j.ccr.2007.12.008
5. Duan ZF, Choy E, Nielsen GP, Rosenberg A, Iafrate J, Yang C, Schwab J, Mankin H, Xavier R, Hornicek FJ (2010) Differential expression of microRNA (miRNA) in chordoma reveals a role for miRNA-1 in Met expression. J Orthop Res 28:746-752. doi: 10.1002/jor.21055
6. Aydemir E, Bayrak OF, Sahin F, Atalay B, Kose GT, Ozen M, Sevli S, Dalan AB, Yalvac ME, Dogruluk T, Türe U (2012) Characterization of cancer stem-like cells in chordoma. J Neurosurg 116:810-820. doi: 10.3171/2011.12. JNS11430
7. Scheil S, Bruderlein S, Liehr T, Starke H, Herms J, Schulte M, Moller P (2001) Genome-wide analysis of sixteen chordomas by comparative genomic hybridization and cytogenetics of the first human chordoma cell line, U-CHI. Gene Chromosome Cancer 32:203-211
8. Hughes TR, Mao M, Jones AR et al (2001) Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol 19:342-347
9. Saldanha AJ (2004) Java treeview-extensible visualization of microarray data. Bioinformatics 20:3246-3248. doi: 10.1093/bioinformatics/bth349
10. Ozen M, Creighton CJ, Ozdemir M, Ittmann M (2008) Widespread deregulation of microRNA expression in human prostate cancer. Oncogene 27:1788-1793. doi: 10.1038/sj.onc.1210809
11. Ng EK, Chong WW, Jin H, Lam EK, Shin VY, Yu J, Poon TC, Ng SS, Sung JJ (2009) Differential expression of microRNAs in plasma of patients with colorectal cancer: a potential marker for colorectal cancer screening. Gut 58:1375-1381. doi: 10.1136/gut.2008.167817
12. Frenquelli M, Muzio M, Scielzo C, Fazi C, Scarfò L, Rossi C, Ferrari G, Ghia P, Caligaris-Cappio F (2010) MicroRNA and proliferation control in chronic lymphocytic leukemia: functional relationship between miR-221/222 cluster and p27. Blood 115:3949-3959. doi: 10.1182/blood-2009-11-254656
13. Anderson C, Catoe H, Werner R (2006) MIR-206 regulates connexin43 expression during skeletal muscle development. Nucleic Acids Res 34:5863-5871. doi: 10.1093/nar/gkl743
14. Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, Hammond SM, Conlon FL, Wang DZ (2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38:228-233. doi: 10.1038/ng1725
15. Kim HK, Lee YS, Sivaprasad U, Malhotra A, Dutta A (2006) Muscle-specific microRNA miR-206 promotes muscle differentiation. J Cell Biol 174:677-687. doi: 10.1083/jcb.200603008
16. Yuasa K, Hagiwara Y, Ando M, Nakamura A, Takeda S, Hijikata T (2008) MicroRNA-206 is highly expressed in newly formed muscle fibers: implications regarding potential for muscle regeneration and maturation in muscular dystrophy. Cell Struct Funct 33:163-169
17. Xu C, Lu Y, Pan Z, Chu W, Luo X, Lin H, Xiao J, Shan H, Wang Z, Yang B (2007) The muscle-specific microRNAs miR-1 and miR-133 produce opposing effects on apoptosis by targeting HSP60, HSP70 and caspase-9 in cardiomyocytes. J Cell Sci 120(Pt 17):3045-3052. doi: 10.1242/jcs.010728
18. Choi KS, Cohn MJ, Harfe BD (2008) Identification of Nucleus Pulposus Precursor Cells and Notochordal Remnants in the Mouse: implications for Disk Degeneration and Chordoma Formation. Dev Dyn 237:3953-3958. doi: 10.1002/dvdy.21805
19. Valastyan S, Reinhardt F, Benaich N, Calogrias D, Szász AM, Wang ZC, Brock JE, Richardson AL, Weinberg RA (2009) A pleiotropically acting microRNA, miR-31, inhibits breast cancer metastasis. Cell 137:1032-1046. doi: 10.1016/j.cell.2009.03.047
20. Ferretti E, De Smaele E, Po A et al (2009) MicroRNA profiling in human medulloblastoma. Int J Cancer 124:568-577. doi: 10.1002/ijc.23948
21. Creighton CJ, Fountain MD, Yu Z et al (2010) Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers. Cancer Res 70:1906-1915
22. de Luca A, Arena N, Sena LM, Medico E (1999) Met overexpression confers HGF-dependent invasive phenotype to human thyroid carcinoma cells in vitro. J Cell Physiol 180:365-371
23. Comoglio PM, Giordano S, Trusolino L (2008) Drug development of MET inhibitors: targeting oncogene addiction and expedience. Nat Rev Drug Discov 7:504-516. doi: 10.1038/nrd2530
24. Naka T, Iwamoto Y, Shinohara N, Ushijima M, Chuman H, Tsuneyoshi M (1997) Expression of c-met proto-oncogene product (c-MET) in benign and malignant bone tumors. Mod Pathol 10:832-838
25. Hua D, Ding D, Han X, Zhang W, Zhao N, Foltz G, Lan Q, Huang Q, Lin B (2012) Human miR-31 targets radixin and inhibits migration and invasion of glioma cells. Oncol Rep 27:700-706. doi: 10.3892/or.2011.1555
26. Valderrama F, Thevapala S, Ridley AJ (2012) Radixin regulates cell migration and cell-cell adhesion through Rac1. J Cell Sci 125(Pt 14):3310-3319. doi: 10.1242/jcs.094383
27. Zheng B, Liang L, Huang S et al (2012) MicroRNA-409 suppresses tumour cell invasion and metastasis by directly targeting radixin in gastric cancers. Oncogene 31:4509-4516. doi: 10.1038/onc.2011
28. Medina R, Zaidi SK, Liu CG, Stein JL, van Wijnen AJ, Croce CM, Stein GS (2008) MicroRNAs 221 and 222 bypass quiescence and compromise cell survival. Cancer Res 68:2773-2780. doi: 10.1158/0008-5472.CAN-07-6754
29. Stinson S, Lackner MR, Adai AT (2011) TRPS1 targeting by miR-221/222 promotes the epithelial-to-mesenchymal transition in breast cancer. Sci Signal 4:ra41. doi: 10.1126/scisignal.2001538
30. Fassan M, Baffa R, Palazzo JP et al (2009) MicroRNA expression profiling of male breast cancer. Breast Cancer Res 11:R58. doi: 10.1186/bcr2348