Performance evaluation of fast microfluidic thermal lysis of bacteria for diagnostic sample preparation

Diagnostics

Volumn 3, Issue 1, 2013, Pages 105-116

  Packard, Michelle M ^a,b   Wheeler, Elizabeth K ^b   Alocilja, Evangelyn C ^a   Shusteff, Maxim ^a,b  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

Bacterial detection; Lab on a chip; Microfluidics; On chip diagnostics; Sample preparation; Thermal lysis

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL DNA;

ARTICLE; BACTERIAL VIABILITY; BACTERIOLYSIS; BACTERIUM CULTURE; CELL MEMBRANE PERMEABILITY; CONTROLLED STUDY; DNA DETERMINATION; ESCHERICHIA COLI; FLUOROMETRY; INTERMETHOD COMPARISON; LAB ON A CHIP; LYSIS; MICROFLUIDICS; NONHUMAN; POLYMERASE CHAIN REACTION; PROTEIN SECRETION; QUANTITATIVE ANALYSIS; THERMAL LYSIS;

EID: 84886559173     PISSN: None     EISSN: 20754418     Source Type: Journal    
DOI: 10.3390/diagnostics3010105     Document Type: Article

References (27)

1. Gubala, V.; Harris, L.F.; Ricco, A.J.; Tan, M.X.; Williams, D.E. Point of care diagnostics: Status and future. Anal. Chem. 2011, 84, 487-515.
2. Mabey, D.; Peeling, R.W.; Ustianowski, A.; Perkins, M.D. Diagnostics for the developing world. Nat. Rev. Microbiol. 2004, 2, 231-240.
3. Yager, P.; Edwards, T.; Fu, E.; Helton, K.; Nelson, K.; Tam, M.R.; Weigl, B.H. Microfluidic diagnostic technologies for global public health. Nature 2006, 442, 412-418.
4. Kim, J.; Johnson, M.; Hill, P.; Gale, B.K.; Microfluidic sample preparation: Cell lysis and nucleic acid purification. Integr. Biol. 2009, 1, 574-586.
5. Brown, R.B.; Audet, J. Current techniques for single-cell lysis. J. R. Soc. Interface 2008, 5, S131-S138.
6. Marentis, T.C.; Kusler, B.; Yaralioglu, G.G.; Liu, S.; Haeggstrom, E.O.; Khuri-Yakub, B.T. Microfluidic sonicator for real-time disruption of eukaryotic cells and bacterial spores for DNA analysis. Ultrasound Med. Biol. 2005, 31, 1265-1277.
7. Taylor, M.T.; Belgrader, P.; Furman, B.J.; Pourahmadi, F.; Kovacs, G.T.; Northrup, M.A. Lysing bacterial spores by sonication through a flexible interface in a microfluidic system. Anal. Chem. 2001, 73, 492-496.
8. Kim, J.; Jang, S.H.; Jia, G.; Zoval, J.V.; Da Silva, N.A.; Madou, M.J. Cell lysis on a microfluidic CD (compact disc). Lab Chip 2004, 4, 516-522.
9. Hwang, K.-Y.; Kwon, S.H.; Jung, S.-O.; Lim, H.-K.; Jung, W.-J.; Park, C.-S.; Kim, J.-H.; Suh, K.-Y.; Huh, N. Miniaturized bead-beating device to automate full DNA sample preparation processes for Gram-positive bacteria. Lab Chip 2011, 11, 3649-3655.
10. Wang, S.; Singh, A.K.; Senapati, D.; Neely, A.; Yu, H.; Ray, P.C. Rapid colorimetric identification and targeted photothermal lysis of Salmonella bacteria by using bioconjugated oval-shaped gold nanoparticles. Chemistry 2010, 16, 5600-5606.
11. Cheong, K.H.; Yi, D.K.; Lee, J.G.; Park, J.M.; Kim, M.J.; Edel, J.B.; Ko, C. Gold nanoparticles for one step DNA extraction and real-time PCR of pathogens in a single chamber. Lab Chip 2008, 8, 810-813.
12. Wang, H.Y.; Bhunia, A.K.; Lu, C. A microfluidic flow-through device for high throughput electrical lysis of bacterial cells based on continuous dc voltage. Biosens. Bioelectron. 2006, 22, 582-588.
13. Lee, H.J.; Kim, J.H.; Lim, H.K.; Cho, E.C.; Huh, N.; Ko, C.; Park, J.C.; Choi, J.W.; Lee, S.S. Electrochemical cell lysis device for DNA extraction. Lab Chip 2010, 10, 626-633.
14. Bao, N.; Lu, C. A microfluidic device for physical trapping and electrical lysis of bacterial cells. Appl. Phys. Lett. 2008, 92, 1-3.
15. De la Rosa, C.; Tilley, P.A.; Fox, J.D.; Kaler, K.V. Microfluidic device for dielectrophoresis manipulation and electrodisruption of respiratory pathogen Bordetella pertussis. IEEE Trans. Biomed. Eng. 2008, 55, 2426-2432.
16. Wang, H.Y.; Banada, P.P.; Bhunia, A.K.; Lu, C. Rapid electrical lysis of bacterial cells in a microfluidic device. Methods Mol. Biol. 2007, 385, 23-35.
17. Lu, K.Y.; Wo, A.M.; Lo, Y.J.; Chen, K.C.; Lin, C.M.; Yang, C.R. Three dimensional electrode array for cell lysis via electroporation. Biosens. Bioelectron. 2006, 22, 568-574.
18. Lin, Y.-H.; Lee, G.-B. An integrated cell counting and continuous cell lysis device using an optically induced electric field. Sens. Actuator. B 2010, 145, 854-860.
19. Chen, D.; Mauk, M.; Qiu, X.; Liu, C.; Kim, J.; Ramprasad, S.; Ongagna, S.; Abrams, W.R.; Malamud, D.; Corstjens, P.L.; Bau, H.H. An integrated, self-contained microfluidic cassette for isolation, amplification and detection of nucleic acids. Biomed. Microdevices 2010, 12, 705-719.
20. Salazar O.; Asenjo, J.A. Enzymatic lysis of microbial cells. Biotechnol. Lett. 2007, 29, 985-994.
21. Schilling, E.A.; Kamholz, A.E.; Yager, P. Cell lysis and protein extraction in a microfluidic device with detection by a fluorogenic enzyme assay. Anal. Chem. 2002, 74, 1798-1804.
22. Mahalanabis, M.; Al-Muayad, H.; Kulinski, M.D.; Altman, D.; Klapperich, C.M. Cell lysis and DNA extraction of gram-positive and gram-negative bacteria from whole blood in a disposable microfluidic chip. Lab Chip 2009, 9, 2811-2817.
23. Hukari, K.W.; Patel, K.D.; Renzi, R.F.; West, J.A. An ultra-high temperature flow-through capillary device for bacterial spore lysis. Electrophoresis 2010, 31, 2804-2812.
24. Abramoff, M.D.; Magalhaes, P.J.; Ram, S.J. Image processing with image. Biophotonics Int. 2004, 11, 36-42.
25. Miller, D.N.; Bryant, J.E.; Madsen, E.L.; Ghiorse, W.C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol. 1999, 65, 4715-4724.
26. De Lipthay, J.R.; Enzinger, C.; Johnsen, K.; Aamand, J.; Sorensen, S.J. Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis. Soil Biol. Biochem. 2004, 36, 1607-1614.
27. Packard, M.M.; Shusteff, M.; Alocilja, E.C. Microfluidic-based amplification-free bacterial DNA detection by dielectrophoretic concentration and fluorescent resonance energy transfer assisted in situ hybridization (FRET-ISH). Biosensors 2012, 2, 405-416.