Using COVAIN to Analyze Metabolomics Data

The Handbook of Plant Metabolomics

Volumn , Issue , 2013, Pages 305-320

  Sun, Xiaoliang ^a   Weckwerth, Wolfram ^a  

^a UNIVERSITY OF VIENNA   (Austria)

Author keywords

Box Cox algorithm; Correlation coefficient; COVAIN; Data mining; Metabolomics; Outliers

Indexed keywords

EID: 84886500809     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527669882.ch17     Document Type: Chapter

References (5)

1. Weckwerth, W. (2011) Unpredictability of metabolism - the key role of metabolomics science in combination with next-generation genome sequencing. Anal. Bioanal. Chem., 400, 1967-1978.
2. Sun, X. andWeckwerth,W. (2012) COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data. Metabolomics, 8, 81-93.
3. Steuer, R., Morgenthal, K., Weckwerth, W., and Selbig, J. (2006) A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358, 105-126.
4. Scholz, M. and Selbig, J. (2007) Visualization and analysis of molecular data. Methods Mol. Biol., 358, 87-104.
5. Morgenthal, K., Wienkoop, S., Scholz, M. et al. (2005) Correlative GC-TOF-MS based metabolite profiling and LC-MS based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics, 1, 109-121.