-
1
-
-
0034954376
-
Aligning gene expression time series with time warping algorithms
-
Aach J., Church G.M. Aligning gene expression time series with time warping algorithms. Bioinformatics 2001, 17(6):495-508.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 495-508
-
-
Aach, J.1
Church, G.M.2
-
2
-
-
84880498448
-
Coping with uncertainty in temporal gene expressions using symbolic representations
-
E. Hüllermeier, R. Kruse, F. Hoffmann (Eds.)
-
Badaloni S., Falda M. Coping with uncertainty in temporal gene expressions using symbolic representations. Information Processing and Management of Uncertainty in Knowledge-Based Systems, 13th International Conference 2010, 11-20. E. Hüllermeier, R. Kruse, F. Hoffmann (Eds.).
-
(2010)
Information Processing and Management of Uncertainty in Knowledge-Based Systems, 13th International Conference
, pp. 11-20
-
-
Badaloni, S.1
Falda, M.2
-
3
-
-
85012688561
-
-
Princeton University Press, Princeton, NJ, Republished 2003: Dover, ISBN 0-486-42809-5
-
Bellman R.E. Dynamic Programming 1957, Princeton University Press, Princeton, NJ, Republished 2003: Dover, ISBN 0-486-42809-5.
-
(1957)
Dynamic Programming
-
-
Bellman, R.E.1
-
4
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake W.J., Kaern M., Cantor C.R., Collins J.J. Noise in eukaryotic gene expression. Nature 2003, 422(April (6932)):633-637.
-
(2003)
Nature
, vol.422
, Issue.6932 APRIL
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
5
-
-
79952755960
-
Oncogene activation induces metabolic transformation resulting in insulin-independence in human breast cancer cells
-
Bollig-Fisher A., Dewey T.G., Ethier S.P. Oncogene activation induces metabolic transformation resulting in insulin-independence in human breast cancer cells. PLoS ONE 2011, 6(March (3)):e17959.
-
(2011)
PLoS ONE
, vol.6
, Issue.3 MARCH
-
-
Bollig-Fisher, A.1
Dewey, T.G.2
Ethier, S.P.3
-
6
-
-
0037263812
-
MAPPFinder: using gene ontology and genmapp to create a global gene expression profile from microarray data
-
Doniger S.W., Salomonis N., Dahlquist K.D., Vranizan K., Lawlor S.C., Conklin B.R. MAPPFinder: using gene ontology and genmapp to create a global gene expression profile from microarray data. Genome Biol. 2003, 4(1):R7.
-
(2003)
Genome Biol.
, vol.4
, Issue.1
-
-
Doniger, S.W.1
Salomonis, N.2
Dahlquist, K.D.3
Vranizan, K.4
Lawlor, S.C.5
Conklin, B.R.6
-
7
-
-
34548400259
-
A systems biology approach for pathway level analysis
-
Draghici S., Khatri P., Tarca A.L., Amin K., Done A., Voichita C., Georgescu C., Romero R. A systems biology approach for pathway level analysis. Genome Res. 2007, 17:1537-1545.
-
(2007)
Genome Res.
, vol.17
, pp. 1537-1545
-
-
Draghici, S.1
Khatri, P.2
Tarca, A.L.3
Amin, K.4
Done, A.5
Voichita, C.6
Georgescu, C.7
Romero, R.8
-
8
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A., Elowitz M.B. Functional roles for noise in genetic circuits. Nature 2010, 467(September (7312)).
-
(2010)
Nature
, vol.467
, Issue.7312 SEPTEMBER
-
-
Eldar, A.1
Elowitz, M.B.2
-
9
-
-
77953246485
-
Analysing time course microarray data using bioconductor: a case study using yeast2 Affymetrix arrays
-
Gillespie C.S., Lei G., Boys R.J., Greenall A., Wilkinson D.J. Analysing time course microarray data using bioconductor: a case study using yeast2 Affymetrix arrays. BMC Res. Notes 2011, 3:81.
-
(2011)
BMC Res. Notes
, vol.3
, pp. 81
-
-
Gillespie, C.S.1
Lei, G.2
Boys, R.J.3
Greenall, A.4
Wilkinson, D.J.5
-
10
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack D.A., Dennis G., Sherman B.T., Lane H.C., Lempicki R.A. Identifying biological themes within lists of genes with EASE. Genome Biol. 2003, 4:R70.
-
(2003)
Genome Biol.
, vol.4
-
-
Hosack, D.A.1
Dennis, G.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
11
-
-
84864668842
-
A unifying view for performance measures in multi-class prediction
-
Jurman G., Furlanello C. A unifying view for performance measures in multi-class prediction. PLoS ONE 2012, 7(8):e41882.
-
(2012)
PLoS ONE
, vol.7
, Issue.8
-
-
Jurman, G.1
Furlanello, C.2
-
12
-
-
79956211692
-
A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression
-
Kalaitzis A.A., Lawrence N.D. A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression. BMC Bioinformatics 2011, 12:180.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 180
-
-
Kalaitzis, A.A.1
Lawrence, N.D.2
-
13
-
-
84860527594
-
Noise in cellular signaling pathways: causes and effects
-
Ladbury J.E., Arold S.T. Noise in cellular signaling pathways: causes and effects. Trends Biochem. Sci. 2012 May, 37(5):173-178.
-
(2012)
Trends Biochem. Sci.
, vol.37
, Issue.5
, pp. 173-178
-
-
Ladbury, J.E.1
Arold, S.T.2
-
14
-
-
78649959694
-
Identifying differentially expressed genes in time course microarray data
-
Ma P., Zhong W., Liu J.S. Identifying differentially expressed genes in time course microarray data. Stat. Biosci. 2009, 1:144-159.
-
(2009)
Stat. Biosci.
, vol.1
, pp. 144-159
-
-
Ma, P.1
Zhong, W.2
Liu, J.S.3
-
15
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews B.W. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 1975, 405:442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
17
-
-
0042553279
-
Smoothing and differentiation of data by simplified least squares procedures
-
Savitzky A., Golay M.J.E. Smoothing and differentiation of data by simplified least squares procedures. Anal. Chem. 1964, 36:1627-1639.
-
(1964)
Anal. Chem.
, vol.36
, pp. 1627-1639
-
-
Savitzky, A.1
Golay, M.J.E.2
-
18
-
-
77949331038
-
Noise in biological circuits
-
March-April (2)
-
Simpson M.L., Cox C.D., Allen M.S., McCollum J.M., Dar R.D., Karig D.K., Cooke J.F. Noise in biological circuits. Wiley Interdisciplinary Reviews Nanomedicine and Nanobiotechnology 2009, 1(March-April (2)):214-225.
-
(2009)
Wiley Interdisciplinary Reviews Nanomedicine and Nanobiotechnology
, vol.1
, pp. 214-225
-
-
Simpson, M.L.1
Cox, C.D.2
Allen, M.S.3
McCollum, J.M.4
Dar, R.D.5
Karig, D.K.6
Cooke, J.F.7
-
19
-
-
18744369640
-
The use of within-array replicate spots for assessing differential expression in microarray experiments
-
Smyth G.K., Michaud J., Scott H. The use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 2005, 21(9):2067-2075.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2067-2075
-
-
Smyth, G.K.1
Michaud, J.2
Scott, H.3
-
20
-
-
24644519314
-
Significance of time course microarray experiments
-
Storey J.D., Xiao W., Leek J.T., Tompkins R., Davis G. Significance of time course microarray experiments. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:12837-12842.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 12837-12842
-
-
Storey, J.D.1
Xiao, W.2
Leek, J.T.3
Tompkins, R.4
Davis, G.5
-
21
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A., Tamayo P., Mootha V.K., Mukherjee S., Ebert B.L., Gillette M.A., Paulovich A., Pomeroy S.L., Golub T.R., Lander E.S., Mesirov J.P. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceeding of the National Academy of Sciences of the United States of America 2005, 102(43):15545-15550.
-
(2005)
Proceeding of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
22
-
-
58049215467
-
A novel signaling pathway impact analysis (SPIA)
-
Tarca A.L., Draghici S., Khatri P., Hassan S., Mittal P., Kim J.S., Kim C.J., Kusanovic J.P., Romero R. A novel signaling pathway impact analysis (SPIA). Bioinformatics 2009, 25(1):75-82.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 75-82
-
-
Tarca, A.L.1
Draghici, S.2
Khatri, P.3
Hassan, S.4
Mittal, P.5
Kim, J.S.6
Kim, C.J.7
Kusanovic, J.P.8
Romero, R.9
-
24
-
-
33645488824
-
Measuring correlation between microarray time-series data using dominant spectral component
-
Conferences in Research and Practice in Information Technology
-
Yeung L.K., Yan H., Wee-Chung Liew A., Szeto L.K., Yang M., Kong R. Measuring correlation between microarray time-series data using dominant spectral component. 2nd Asia-Pacific Bioinformatics Conference (APBC2004) 2013, Conferences in Research and Practice in Information Technology, vol. 29.
-
(2013)
2nd Asia-Pacific Bioinformatics Conference (APBC2004)
, vol.29
-
-
Yeung, L.K.1
Yan, H.2
Wee-Chung Liew, A.3
Szeto, L.K.4
Yang, M.5
Kong, R.6
-
25
-
-
0038175144
-
GoMiner: a resource for biological interpretation of genomic and proteomic data
-
Zeeberg B., Feng W., Wang G., Wang M., Fojo A., Sunshine M., Narasimhan S., Kane D., Reinhold W., Lababidi S., Bussey K., Riss J., Barrett J., Weinstein J. GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol. 2003, 4(4):R28.
-
(2003)
Genome Biol.
, vol.4
, Issue.4
-
-
Zeeberg, B.1
Feng, W.2
Wang, G.3
Wang, M.4
Fojo, A.5
Sunshine, M.6
Narasimhan, S.7
Kane, D.8
Reinhold, W.9
Lababidi, S.10
Bussey, K.11
Riss, J.12
Barrett, J.13
Weinstein, J.14
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