-
1
-
-
79952907122
-
Pathogen quantitation in complex matrices: A multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition
-
doi:10.1371/journal.pone.0017916
-
Pontiroli A, Travis ER, Sweeney FP, Porter D, Gaze WH, et al. (2011) Pathogen quantitation in complex matrices: A multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLOS ONE 6: e17916. doi:10.1371/journal.pone.0017916. PubMed: 21448453.
-
(2011)
PLOS ONE
, vol.6
-
-
Pontiroli, A.1
Travis, E.R.2
Sweeney, F.P.3
Porter, D.4
Gaze, W.H.5
-
2
-
-
25444517097
-
A novel EB-1/AIDA-1 isoform, AIDA-1c, interacts with the Cajal body protein coilin
-
Xu H, Hebert MD, (2005) A novel EB-1/AIDA-1 isoform, AIDA-1c, interacts with the Cajal body protein coilin. BMC Cell Biology 6: 1-13.
-
(2005)
BMC Cell Biology
, vol.6
, pp. 1-13
-
-
Xu, H.1
Hebert, M.D.2
-
3
-
-
0038507158
-
Detection and verification of Mycobacterium avium subsp. paratuberculosis in fresh ileocolonic mucosal biopsy specimens from individuals with and without Crohn's Disease
-
doi:10.1128/JCM.41.7.2915-2923.2003
-
Bull TJ, McMinn EJ, Sidi-Boumedine K, Skull A, Durkin D, et al. (2003) Detection and verification of Mycobacterium avium subsp. paratuberculosis in fresh ileocolonic mucosal biopsy specimens from individuals with and without Crohn's Disease. J Clin Microbiol 41: 2915-2923. doi:10.1128/JCM.41.7.2915-2923.2003. PubMed: 12843021.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 2915-2923
-
-
Bull, T.J.1
McMinn, E.J.2
Sidi-Boumedine, K.3
Skull, A.4
Durkin, D.5
-
4
-
-
27944442709
-
Mycobacterium avium subspecies paratuberculosis in the inflamed gut tissues of patients with Crohn's disease in China and its potential relationship to the consumption of cow's milk: a preliminary study
-
doi:10.1007/s11274-005-0809-z
-
Cheng J, Bull TJ, Dalton P, Cen S, Finlayson C, et al. (2005) Mycobacterium avium subspecies paratuberculosis in the inflamed gut tissues of patients with Crohn's disease in China and its potential relationship to the consumption of cow's milk: a preliminary study. World J Microbiol Biotechnol 21: 1175-1179. doi:10.1007/s11274-005-0809-z.
-
(2005)
World J Microbiol Biotechnol
, vol.21
, pp. 1175-1179
-
-
Cheng, J.1
Bull, T.J.2
Dalton, P.3
Cen, S.4
Finlayson, C.5
-
5
-
-
27744585850
-
Absence of Mycobacterium avium subspecies paratuberculosis components from Crohn's Disease intestinal biopsy tissues
-
doi:10.3121/cmr.1.3.217
-
Ellingson JLE, Cheville JC, Brees D, Cheville NF, (2003) Absence of Mycobacterium avium subspecies paratuberculosis components from Crohn's Disease intestinal biopsy tissues. Clin Med Res 1: 217-226. doi:10.3121/cmr.1.3.217. PubMed: 15931311.
-
(2003)
Clin Med Res
, vol.1
, pp. 217-226
-
-
Ellingson, J.L.E.1
Cheville, J.C.2
Brees, D.3
Cheville, N.F.4
-
6
-
-
0005895290
-
Polymerase chain reaction identification of Mycobacterium avium in formalin-fixed, paraffin-embedded animal tissues
-
doi:10.1177/104063879901100508
-
Miller JM, Jenny AL, Ellingson JL, (1999) Polymerase chain reaction identification of Mycobacterium avium in formalin-fixed, paraffin-embedded animal tissues. J Vet Diagn Invest 11: 436-440. doi:10.1177/104063879901100508. PubMed: 12968757.
-
(1999)
J Vet Diagn Invest
, vol.11
, pp. 436-440
-
-
Miller, J.M.1
Jenny, A.L.2
Ellingson, J.L.3
-
7
-
-
0028778449
-
A rapid method for the extraction and detection detection of Mycobacterium avium subspecies paratuberculosis from clinical specimens
-
Challans JA, Stevenson K, Reid HW, Sharp JM, (1994) A rapid method for the extraction and detection detection of Mycobacterium avium subspecies paratuberculosis from clinical specimens. Vet Res 134: 95-96.
-
(1994)
Vet Res
, vol.134
, pp. 95-96
-
-
Challans, J.A.1
Stevenson, K.2
Reid, H.W.3
Sharp, J.M.4
-
8
-
-
79955536127
-
Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays
-
doi:10.1128/JCM.01492-10
-
Imirzalioglu C, Dahmen H, Hain T, Billion A, Kuenne C, et al. (2011) Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays. J Clin Microbiol 49: 1843-1852. doi:10.1128/JCM.01492-10. PubMed: 21430100.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 1843-1852
-
-
Imirzalioglu, C.1
Dahmen, H.2
Hain, T.3
Billion, A.4
Kuenne, C.5
-
9
-
-
0037667818
-
Paratuberculosis in Key deer (Odocoileus virginianus clavus)
-
doi:10.7589/0090-3558-38.4.729
-
Quist CF, Nettles VF, Manning EJB, Hall DG, Gaydos JK, et al. (2002) Paratuberculosis in Key deer (Odocoileus virginianus clavus). J Wildl Dis 38: 729-737. doi:10.7589/0090-3558-38.4.729. PubMed: 12528439.
-
(2002)
J Wildl Dis
, vol.38
, pp. 729-737
-
-
Quist, C.F.1
Nettles, V.F.2
Manning, E.J.B.3
Hall, D.G.4
Gaydos, J.K.5
-
10
-
-
0031830013
-
Detection of Mycobacterium paratuberculosis in stool samples of patients with inflammatory bowel disease by IS900-based PCR and colorimetric detection of amplified DNA
-
doi:10.1016/S0167-7012(98)00036-0
-
Del Prete RD, Quaranta M, Lippolis A, Giannuzzi V, Mosca A, et al. (1998) Detection of Mycobacterium paratuberculosis in stool samples of patients with inflammatory bowel disease by IS900-based PCR and colorimetric detection of amplified DNA. J Microbiol Methods 33: 105-114. doi:10.1016/S0167-7012(98)00036-0.
-
(1998)
J Microbiol Methods
, vol.33
, pp. 105-114
-
-
Del Prete, R.D.1
Quaranta, M.2
Lippolis, A.3
Giannuzzi, V.4
Mosca, A.5
-
11
-
-
84859816432
-
Counting mycobacteria in infected human cells and mouse tissue: A comparison between qPCR and CFU
-
doi:10.1371/journal.pone.0034931
-
Pathak S, Awuh JA, Leversen NA, Flo TH, Åsjø B, (2012) Counting mycobacteria in infected human cells and mouse tissue: A comparison between qPCR and CFU. PLOS ONE 7: e34931. doi:10.1371/journal.pone.0034931. PubMed: 22532835.
-
(2012)
PLOS ONE
, vol.7
-
-
Pathak, S.1
Awuh, J.A.2
Leversen, N.A.3
Flo, T.H.4
Åsjø, B.5
-
12
-
-
33644900776
-
Novel technique of quantitative nested real-time PCR assay for Mycobacterium tuberculosis DNA
-
doi:10.1128/JCM.44.3.1029-1039.2006
-
Takahashi T, Nakayama T, (2006) Novel technique of quantitative nested real-time PCR assay for Mycobacterium tuberculosis DNA. J Clin Microbiol 44: 1029-1039. doi:10.1128/JCM.44.3.1029-1039.2006. PubMed: 16517891.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 1029-1039
-
-
Takahashi, T.1
Nakayama, T.2
-
13
-
-
69949124255
-
Detection of Mycobacterium tuberculosis complex organisms in the stools of patients with pulmonary tuberculosis
-
doi:10.1099/mic.0.026484-0
-
El Khéchine A, Henry M, Raoult D, Drancourt M, (2009) Detection of Mycobacterium tuberculosis complex organisms in the stools of patients with pulmonary tuberculosis. Microbiology 155: 2384-2389. doi:10.1099/mic.0.026484-0. PubMed: 19389783.
-
(2009)
Microbiology
, vol.155
, pp. 2384-2389
-
-
El Khéchine, A.1
Henry, M.2
Raoult, D.3
Drancourt, M.4
-
14
-
-
68349116305
-
Real-time PCR with internal amplification control for detecting tuberculosis: method design and validation
-
Flores E, Rodríguez JC, Garcia-Pachón E, Soto JL, Ruiz M, et al. (2009) Real-time PCR with internal amplification control for detecting tuberculosis: method design and validation. Acta Pathol Microbiol Scand 117: 592-597. PubMed: 19664130.
-
(2009)
Acta Pathol Microbiol Scand
, vol.117
, pp. 592-597
-
-
Flores, E.1
Rodríguez, J.C.2
Garcia-Pachón, E.3
Soto, J.L.4
Ruiz, M.5
-
15
-
-
45249092106
-
Comparison of three DNA extraction methods for Mycobacterium bovis, Mycobacterium tuberculosis and Mycobacterium avium subsp. avium
-
doi:10.1111/j.1472-765X.2008.02372.x
-
Amaro A, Duarte E, Amado A, Ferronha H, Botelho A, (2008) Comparison of three DNA extraction methods for Mycobacterium bovis, Mycobacterium tuberculosis and Mycobacterium avium subsp. avium. Lett Appl Microbiol 47: 8-11. doi:10.1111/j.1472-765X.2008.02372.x. PubMed: 18498320.
-
(2008)
Lett Appl Microbiol
, vol.47
, pp. 8-11
-
-
Amaro, A.1
Duarte, E.2
Amado, A.3
Ferronha, H.4
Botelho, A.5
-
16
-
-
0025952233
-
Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis
-
van Soolingen D, Hermans PWM, de Haas PEW, Soll DR, van Embden JDA, (1991) Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29: 2578-2586. PubMed: 1685494.
-
(1991)
J Clin Microbiol
, vol.29
, pp. 2578-2586
-
-
van Soolingen, D.1
Hermans, P.W.M.2
de Haas, P.E.W.3
Soll, D.R.4
van Embden, J.D.A.5
-
17
-
-
77950493402
-
Genotypic diversity of Mycobacterium avium subspecies from human and animal origins, studied by MIRU-VNTR and IS1311 RFLP typing methods
-
doi:10.1128/JCM.01869-09
-
Radomski N, Thibault VC, Karoui C, de Cruz K, Cochard T, et al. (2010) Genotypic diversity of Mycobacterium avium subspecies from human and animal origins, studied by MIRU-VNTR and IS1311 RFLP typing methods. J Clin Microbiol 48: 1026-1034. doi:10.1128/JCM.01869-09. PubMed: 20107094.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 1026-1034
-
-
Radomski, N.1
Thibault, V.C.2
Karoui, C.3
de Cruz, K.4
Cochard, T.5
-
18
-
-
68249094323
-
Lack of CFTR in skeletal muscle predisposes to muscle wasting and diaphragm muscle pump failure in cystic fibrosis mice
-
Divangahi M, Balghi H, Danialou G, Comtois AS, Demoule A, et al. (2009) Lack of CFTR in skeletal muscle predisposes to muscle wasting and diaphragm muscle pump failure in cystic fibrosis mice. PLOS Genet 5: e1000586. PubMed: 19649303.
-
(2009)
PLOS Genet
, vol.5
-
-
Divangahi, M.1
Balghi, H.2
Danialou, G.3
Comtois, A.S.4
Demoule, A.5
-
19
-
-
33745584114
-
Identification of novel virulence determinants in Mycobacterium paratuberculosis by screening a library of insertional mutants
-
doi:10.1128/IAI.01742-05
-
Shin SJ, Wu CW, Steinberg H, Talaat AM, (2006) Identification of novel virulence determinants in Mycobacterium paratuberculosis by screening a library of insertional mutants. Infect Immun 74: 3825-3833. doi:10.1128/IAI.01742-05. PubMed: 16790754.
-
(2006)
Infect Immun
, vol.74
, pp. 3825-3833
-
-
Shin, S.J.1
Wu, C.W.2
Steinberg, H.3
Talaat, A.M.4
-
20
-
-
0842283052
-
Paucibacillary tuberculosis in mice after prior aerosol immunization with Mycobacterium bovis BCG
-
doi:10.1128/IAI.72.2.1065-1071.2004
-
Nuermberger EL, Yoshimatsu T, Tyagi S, Bishai WR, Grosset JH, (2004) Paucibacillary tuberculosis in mice after prior aerosol immunization with Mycobacterium bovis BCG. Infect Immun 72: 1065-1071. doi:10.1128/IAI.72.2.1065-1071.2004. PubMed: 14742554.
-
(2004)
Infect Immun
, vol.72
, pp. 1065-1071
-
-
Nuermberger, E.L.1
Yoshimatsu, T.2
Tyagi, S.3
Bishai, W.R.4
Grosset, J.H.5
-
21
-
-
34248549305
-
Comparison and optimization of ancient DNA extraction
-
doi:10.2144/000112383
-
Rohland N, Hofreiter M, (2007) Comparison and optimization of ancient DNA extraction. BioTechniques 42: 343-352. doi:10.2144/000112383. PubMed: 17390541.
-
(2007)
BioTechniques
, vol.42
, pp. 343-352
-
-
Rohland, N.1
Hofreiter, M.2
-
22
-
-
0036841729
-
Optimal DNA isolation method for detection of bacteria in clinical specimens by broad-range PCR
-
doi:10.1128/JCM.40.11.4211-4217.2002
-
Rantakokko-Jalava K, Jalava J, (2002) Optimal DNA isolation method for detection of bacteria in clinical specimens by broad-range PCR. J Clin Microbiol 40: 4211-4217. doi:10.1128/JCM.40.11.4211-4217.2002. PubMed: 12409400.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 4211-4217
-
-
Rantakokko-Jalava, K.1
Jalava, J.2
-
23
-
-
33747079929
-
Nucleic acid extraction from clinical specimens for PCR applications
-
Aygan A, (2006) Nucleic acid extraction from clinical specimens for PCR applications. Turk J Biol 30: 107-120.
-
(2006)
Turk J Biol
, vol.30
, pp. 107-120
-
-
Aygan, A.1
-
24
-
-
33646787129
-
Methods of mycobacterial DNA isolation from different biological material: a review
-
Hosek J, Svastova P, Moravkova M, Pavlik I, Bartos M, (2006) Methods of mycobacterial DNA isolation from different biological material: a review. Vet Med 51: 180-192.
-
(2006)
Vet Med
, vol.51
, pp. 180-192
-
-
Hosek, J.1
Svastova, P.2
Moravkova, M.3
Pavlik, I.4
Bartos, M.5
-
26
-
-
84858405768
-
Enumeration of Mycobacterium avium subsp. paratuberculosis by quantitative real-time PCR, culture on solid media and optical densitometry
-
Kralik P, Beran V, Pavlik I, (2012) Enumeration of Mycobacterium avium subsp. paratuberculosis by quantitative real-time PCR, culture on solid media and optical densitometry. BMC Res Notes 22: 1-5. PubMed: 22357065.
-
(2012)
BMC Res Notes
, vol.22
, pp. 1-5
-
-
Kralik, P.1
Beran, V.2
Pavlik, I.3
-
27
-
-
84862885205
-
Quality assessment of biobanked nucleic acid extracts for downstream molecular analysis
-
doi:10.1089/bio.2012.0004
-
Wahlberg K, Huggett J, Sanders R, Whale AS, Bushell C, et al. (2012) Quality assessment of biobanked nucleic acid extracts for downstream molecular analysis. Biopreservation and Biobanking 10: 266-275. doi:10.1089/bio.2012.0004.
-
(2012)
Biopreservation and Biobanking
, vol.10
, pp. 266-275
-
-
Wahlberg, K.1
Huggett, J.2
Sanders, R.3
Whale, A.S.4
Bushell, C.5
-
28
-
-
79959815564
-
Evaluation of a single-tube multiplex real-time PCR for differentiation of members of the Mycobacterium tuberculosis complex in clinical specimens
-
doi:10.1128/JCM.00467-11
-
Halse TA, Escuyer VE, Musser KA, (2011) Evaluation of a single-tube multiplex real-time PCR for differentiation of members of the Mycobacterium tuberculosis complex in clinical specimens. J Clin Microbiol 49: 2562-2567. doi:10.1128/JCM.00467-11. PubMed: 21593269.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 2562-2567
-
-
Halse, T.A.1
Escuyer, V.E.2
Musser, K.A.3
-
29
-
-
83455203483
-
Real-time PCR-based assay to quantify the relative amount of human and mouse tissue present in tumor xenografts
-
doi:10.1186/1472-6750-11-1
-
Alcoser SY, Kimmel DJ, Borgel SD, Carter JP, Dougherty KM, et al. (2011) Real-time PCR-based assay to quantify the relative amount of human and mouse tissue present in tumor xenografts. BMC Biotechnol 11: 1-19. doi:10.1186/1472-6750-11-1. PubMed: 21208406.
-
(2011)
BMC Biotechnol
, vol.11
, pp. 1-19
-
-
Alcoser, S.Y.1
Kimmel, D.J.2
Borgel, S.D.3
Carter, J.P.4
Dougherty, K.M.5
-
30
-
-
84874536643
-
Digital PCR to detect and quantify heteroresistance in drug resistant Mycobacterium tuberculosis
-
doi:10.1371/journal.pone.0057238
-
Pholwat S, Stroup S, Foongladda S, Houpt E, (2013) Digital PCR to detect and quantify heteroresistance in drug resistant Mycobacterium tuberculosis. PLOS ONE 8: e57238. doi:10.1371/journal.pone.0057238. PubMed: 23468945.
-
(2013)
PLOS ONE
, vol.8
-
-
Pholwat, S.1
Stroup, S.2
Foongladda, S.3
Houpt, E.4
-
31
-
-
79955786284
-
Mycobacterium ulcerans DNA not detected in faecal samples from Buruli Ulcer patients: Results of a pilot study
-
doi:10.1371/journal.pone.0019611
-
Sarfo FS, Lavender CJ, Fyfe JAM, Johnson PDR, Stinear TP, et al. (2011) Mycobacterium ulcerans DNA not detected in faecal samples from Buruli Ulcer patients: Results of a pilot study. PLOS ONE 6: e19611. doi:10.1371/journal.pone.0019611. PubMed: 21573192.
-
(2011)
PLOS ONE
, vol.6
-
-
Sarfo, F.S.1
Lavender, C.J.2
Fyfe, J.A.M.3
Johnson, P.D.R.4
Stinear, T.P.5
-
32
-
-
80054892169
-
Evidence for mycobacteria in sarcoidosis
-
Isaac Brownell I, Ramirez-Valle F, Miguel Sanchez M, Stephen Prystowsky S, (2011) Evidence for mycobacteria in sarcoidosis. American Journal of Respiratory Cell and Molecular Biology 45: 899-905.
-
(2011)
American Journal of Respiratory Cell and Molecular Biology
, vol.45
, pp. 899-905
-
-
Isaac Brownell, I.1
Ramirez-Valle, F.2
Miguel Sanchez, M.3
Stephen Prystowsky, S.4
-
33
-
-
84874819855
-
Detection of Mycobacterium avium ss. paratuberculosis in Blau syndrome tissues
-
Dow CT, Ellingson JL, (2010) Detection of Mycobacterium avium ss. paratuberculosis in Blau syndrome tissues. J Autoimmune Dis 2011: 1-5. PubMed: 21152214.
-
(2010)
J Autoimmune Dis
, vol.2011
, pp. 1-5
-
-
Dow, C.T.1
Ellingson, J.L.2
-
34
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
doi:10.1038/nature11582
-
Jostins L, Ripke S, Weersma RK, Duerr RH, McGovern DP, et al. (2012) Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491: 119-124. doi:10.1038/nature11582. PubMed: 23128233.
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
Ripke, S.2
Weersma, R.K.3
Duerr, R.H.4
McGovern, D.P.5
-
35
-
-
0002697993
-
Mycobacteria cell walls II. Chemical composition of the "Basal Layer"
-
Takeya K, Hisatsune K, Inoue Y, (1963) Mycobacteria cell walls II. Chemical composition of the "Basal Layer". J Bacteriol 85: 24-30. PubMed: 13984704.
-
(1963)
J Bacteriol
, vol.85
, pp. 24-30
-
-
Takeya, K.1
Hisatsune, K.2
Inoue, Y.3
-
36
-
-
0037844364
-
Structure, function, and biogenesis of the cell wall of Mycobacterium tuberculosis
-
Brennan PJ, (2003) Structure, function, and biogenesis of the cell wall of Mycobacterium tuberculosis. Tuberculosis (Edinb) 83: 91-97. PubMed: 12758196.
-
(2003)
Tuberculosis (Edinb)
, vol.83
, pp. 91-97
-
-
Brennan, P.J.1
|