-
1
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ: Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008, 18: 758-762.
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
2
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC: microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
3
-
-
58149182724
-
NCBI GEO: archive for high-throughput functional genomic data
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA: NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 2009, 37: D885-D890.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Marshall, K.A.10
-
4
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ: Origins and mechanisms of miRNAs and siRNAs. Cell 2009, 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
5
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X: Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009, 25: 21-44.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
6
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai X, Zhao PX: psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39: W155-W159.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dai, X.1
Zhao, P.X.2
-
7
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R: Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nature Biotechnol 2008, 26: 941-946.
-
(2008)
Nature Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
Janardhanan, P.6
Kannan, V.7
Rymarquis, L.A.8
Nobuta, K.9
German, R.10
-
8
-
-
63849207321
-
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
-
German MA, Luo S, Schroth G, Meyers BC, Green PJ: Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc 2009, 4: 356-362.
-
(2009)
Nat Protoc
, vol.4
, pp. 356-362
-
-
German, M.A.1
Luo, S.2
Schroth, G.3
Meyers, B.C.4
Green, P.J.5
-
10
-
-
0035180589
-
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
-
Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W: The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res 2001, 29: 102-105.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 102-105
-
-
Huala, E.1
Dickerman, A.W.2
Garcia-Hernandez, M.3
Weems, D.4
Reiser, L.5
LaFond, F.6
Hanley, D.7
Kiphart, D.8
Zhuang, M.9
Huang, W.10
-
11
-
-
33846120020
-
CSRDB: a small RNA integrated database and browser resource for cereals
-
Johnson C, Bowman L, Adai AT, Vance V, Sundaresan V: CSRDB: a small RNA integrated database and browser resource for cereals. Nucleic Acids Res 2007, 35: D829-D833.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Johnson, C.1
Bowman, L.2
Adai, A.T.3
Vance, V.4
Sundaresan, V.5
-
13
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN: MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23: 4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
14
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R: Transcriptome-wide identification of microRNA targets in rice. Plant J 2010, 62: 742-759.
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
Zhang, L.4
Saini, A.5
Jagadeeswaran, G.6
Axtell, M.J.7
Zhang, W.8
Sunkar, R.9
-
15
-
-
79960024314
-
Toward microRNA-mediated gene regulatory networks in plants
-
Meng Y, Shao C, Chen M: Toward microRNA-mediated gene regulatory networks in plants. Brief Bioinform 2011, 12: 645-659.
-
(2011)
Brief Bioinform
, vol.12
, pp. 645-659
-
-
Meng, Y.1
Shao, C.2
Chen, M.3
-
16
-
-
33644876658
-
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA
-
Nakano M, Nobuta K, Vemaraju K, Tej SS, Skogen JW, Meyers BC: Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Res 2006, 34: D731-D735.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Nakano, M.1
Nobuta, K.2
Vemaraju, K.3
Tej, S.S.4
Skogen, J.W.5
Meyers, B.C.6
-
17
-
-
77953489252
-
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
-
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J: Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 2010, 62: 960-976.
-
(2010)
Plant J
, vol.62
, pp. 960-976
-
-
Pantaleo, V.1
Szittya, G.2
Moxon, S.3
Miozzi, L.4
Moulton, V.5
Dalmay, T.6
Burgyan, J.7
-
18
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O: Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
19
-
-
22144433672
-
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
-
Williams L, Carles CC, Osmont KS, Fletcher JC: A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci USA 2005, 102: 9703-9708.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9703-9708
-
-
Williams, L.1
Carles, C.C.2
Osmont, K.S.3
Fletcher, J.C.4
-
20
-
-
77951974552
-
DNA methylation mediated by a microRNA pathway
-
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y: DNA methylation mediated by a microRNA pathway. Mol Cell 2010, 38: 465-475.
-
(2010)
Mol Cell
, vol.38
, pp. 465-475
-
-
Wu, L.1
Zhou, H.2
Zhang, Q.3
Zhang, J.4
Ni, F.5
Liu, C.6
Qi, Y.7
-
21
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC: Expression of Arabidopsis MIRNA genes. Plant Physiol 2005, 138: 2145-2154.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
22
-
-
0037250149
-
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists
-
Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR: The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Res 2003, 31: 229-233.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 229-233
-
-
Yuan, Q.1
Ouyang, S.2
Liu, J.3
Suh, B.4
Cheung, F.5
Sultana, R.6
Lee, D.7
Quackenbush, J.8
Buell, C.R.9
-
23
-
-
23144458275
-
miRU: an automated plant miRNA target prediction server
-
Zhang Y: miRU: an automated plant miRNA target prediction server. Nucleic Acids Res 2005, 33: W701-W704.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, Y.1
|