메뉴 건너뛰기




Volumn 7, Issue 4, 2013, Pages 435-443

Complete sequence and genetic features of the mitochondrial genome of Pyropia tenera (Rhodophyta)

Author keywords

Intronic ORF; Mitochondrial genome; mtDNA; Porphyra; Pyropiatenera; Red algae

Indexed keywords

ALGAE; BANGIALES; PORPHYRA; RHODOPHYTA; UCA;

EID: 84885952926     PISSN: 18635466     EISSN: 18635474     Source Type: Journal    
DOI: 10.1007/s11816-013-0281-4     Document Type: Article
Times cited : (17)

References (27)
  • 1
    • 4644299619 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome: protist connections to animals, fungi and plants
    • Bullerwell CE, Gray MW (2004) Evolution of the mitochondrial genome: protist connections to animals, fungi and plants. Curr Opin Microbiol 7: 528-534.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 528-534
    • Bullerwell, C.E.1    Gray, M.W.2
  • 2
    • 0033197505 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: Cyanobacterial introns and shared ancestry of red and green algae
    • Burger G, Saint-Louis D, Gray MW, Lang BF (1999) Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: Cyanobacterial introns and shared ancestry of red and green algae. Plant Cell 11: 1675-1694.
    • (1999) Plant Cell , vol.11 , pp. 1675-1694
    • Burger, G.1    Saint-Louis, D.2    Gray, M.W.3    Lang, B.F.4
  • 3
    • 40749117710 scopus 로고    scopus 로고
    • GenomeVx: simple web-based creation of editable circular chromosome maps
    • Conant GC, Wolfe KH (2008) GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 24: 861-862.
    • (2008) Bioinformatics , vol.24 , pp. 861-862
    • Conant, G.C.1    Wolfe, K.H.2
  • 5
    • 79953019364 scopus 로고    scopus 로고
    • Red algae lose key mitochondrial genes in response to becoming parasitic
    • Hancock L, Goff L, Lane C (2010) Red algae lose key mitochondrial genes in response to becoming parasitic. Genome Biol Evol 2: 897-910.
    • (2010) Genome Biol Evol , vol.2 , pp. 897-910
    • Hancock, L.1    Goff, L.2    Lane, C.3
  • 6
    • 33847211611 scopus 로고    scopus 로고
    • DNA sequences and identification of Porphyra cultivated by natural seeding on the southwest coast of Korea
    • Hwang MS, Kim S-M, Ha D-S, Baek JM, Kim H-S, Choi H-G (2005) DNA sequences and identification of Porphyra cultivated by natural seeding on the southwest coast of Korea. Algae 20: 183-196.
    • (2005) Algae , vol.20 , pp. 183-196
    • Hwang, M.S.1    Kim, S.-M.2    Ha, D.-S.3    Baek, J.M.4    Kim, H.-S.5    Choi, H.-G.6
  • 7
    • 41149116105 scopus 로고    scopus 로고
    • Recurrent invasion of mitochondrial group II Introns in specimens of Pylaiella littoralis (Brown Alga), collected worldwide
    • Ikuta K, Kawai H, Müller DG, Ohama T (2008) Recurrent invasion of mitochondrial group II Introns in specimens of Pylaiella littoralis (Brown Alga), collected worldwide. Curr Genet 53: 207-216.
    • (2008) Curr Genet , vol.53 , pp. 207-216
    • Ikuta, K.1    Kawai, H.2    Müller, D.G.3    Ohama, T.4
  • 8
    • 0029161177 scopus 로고
    • Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization
    • Leblanc C, Boyen C, Richard O, Bonnard G, Grienenberger JM, Kloareg B (1995) Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization. J Mol Biol 250: 484-495.
    • (1995) J Mol Biol , vol.250 , pp. 484-495
    • Leblanc, C.1    Boyen, C.2    Richard, O.3    Bonnard, G.4    Grienenberger, J.M.5    Kloareg, B.6
  • 9
    • 84863206928 scopus 로고    scopus 로고
    • The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction
    • Lin C-P, Wu C-S, Huang Y-Y, Chaw S-M (2012) The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol 4: 374-381.
    • (2012) Genome Biol Evol , vol.4 , pp. 374-381
    • Lin, C.-P.1    Wu, C.-S.2    Huang, Y.-Y.3    Chaw, S.-M.4
  • 10
    • 84867250801 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Pyropia haitanensis Chang et Zheng
    • Mao Y, Zhang B, Kong F, Wang L (2012) The complete mitochondrial genome of Pyropia haitanensis Chang et Zheng. Mitochondrial DNA 23: 344-346.
    • (2012) Mitochondrial DNA , vol.23 , pp. 344-346
    • Mao, Y.1    Zhang, B.2    Kong, F.3    Wang, L.4
  • 11
    • 78649881325 scopus 로고    scopus 로고
    • Allopolyploidy in natural and cultivated populations of Porphyra (Bangiales, Rhodophyta)
    • Niwa K, Sakamoto T (2010) Allopolyploidy in natural and cultivated populations of Porphyra (Bangiales, Rhodophyta). J Phycol 46: 1097-1105.
    • (2010) J Phycol , vol.46 , pp. 1097-1105
    • Niwa, K.1    Sakamoto, T.2
  • 12
    • 33645092313 scopus 로고    scopus 로고
    • Confirmation of cultivated Porphyra tenera (Bangiales, Rhodophyta) by polymerase chain reaction restriction fragment length polymorphism analyses of the plastid and nuclear DNA
    • Niwa K, Kobiyama A, Aruga Y (2005) Confirmation of cultivated Porphyra tenera (Bangiales, Rhodophyta) by polymerase chain reaction restriction fragment length polymorphism analyses of the plastid and nuclear DNA. Phycol Res 53: 296-302.
    • (2005) Phycol Res , vol.53 , pp. 296-302
    • Niwa, K.1    Kobiyama, A.2    Aruga, Y.3
  • 13
    • 0346985255 scopus 로고    scopus 로고
    • The mitochondrial genome of protists
    • Odintsova MS, Yurina NP (2002) The mitochondrial genome of protists. Russ J Genet 38: 642-655.
    • (2002) Russ J Genet , vol.38 , pp. 642-655
    • Odintsova, M.S.1    Yurina, N.P.2
  • 14
    • 77957303499 scopus 로고    scopus 로고
    • An unprecedented group-II intron from Chlamydomonas caudata (Chlorophyceae) that has two large open reading frames-potentially encoding a reverse transcriptase-maturase-endonuclease and a novel protein
    • Odom OW, Herrin DL (2010) An unprecedented group-II intron from Chlamydomonas caudata (Chlorophyceae) that has two large open reading frames-potentially encoding a reverse transcriptase-maturase-endonuclease and a novel protein. J Phycol 46: 969-973.
    • (2010) J Phycol , vol.46 , pp. 969-973
    • Odom, O.W.1    Herrin, D.L.2
  • 15
    • 0032534002 scopus 로고    scopus 로고
    • Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence
    • Ohta N, Sato N, Kuroiwa T (1998) Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res 26: 5190-5198.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5190-5198
    • Ohta, N.1    Sato, N.2    Kuroiwa, T.3
  • 16
    • 33847216917 scopus 로고    scopus 로고
    • Genetic polymorphism within Porphyra yezoensis (Bangiales, Rhodophyta) and related species from Japan and Korea detected by cleaved amplified polymorphic sequence analysis
    • Park E-J, Fukuda S, Endo H, Kitade Y, Saga N (2007) Genetic polymorphism within Porphyra yezoensis (Bangiales, Rhodophyta) and related species from Japan and Korea detected by cleaved amplified polymorphic sequence analysis. Eur J Phycol 42: 29-40.
    • (2007) Eur J Phycol , vol.42 , pp. 29-40
    • Park, E.-J.1    Fukuda, S.2    Endo, H.3    Kitade, Y.4    Saga, N.5
  • 17
    • 0020338446 scopus 로고
    • Sequence of a 1.26-kb DNA fragment containing the structural gene for E. coli initiation factor IF3: presence of an AUU initiator codon
    • Sacerdot C, Fayat G, Dessen P, Springer M, Plumbridge JA, Grunberg-Manago M, Blanquet S (1982) Sequence of a 1. 26-kb DNA fragment containing the structural gene for E. coli initiation factor IF3: presence of an AUU initiator codon. EMBO J 1: 311-315.
    • (1982) EMBO J , vol.1 , pp. 311-315
    • Sacerdot, C.1    Fayat, G.2    Dessen, P.3    Springer, M.4    Plumbridge, J.A.5    Grunberg-Manago, M.6    Blanquet, S.7
  • 18
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Schattner P, Brooks AN, Lowe TM (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 33: W686-W689.
    • (2005) Nucleic Acids Res , vol.33
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 19
    • 0030000858 scopus 로고    scopus 로고
    • Mitochondrial intronic open reading frames in Podospora: mobility and consecutive exonic sequence variations
    • Sellem CH, d'Aubenton-Carafa Y, Rossignol M, Belcour L (1996) Mitochondrial intronic open reading frames in Podospora: mobility and consecutive exonic sequence variations. Genetics 143: 777-788.
    • (1996) Genetics , vol.143 , pp. 777-788
    • Sellem, C.H.1    d'Aubenton-Carafa, Y.2    Rossignol, M.3    Belcour, L.4
  • 20
    • 19944430021 scopus 로고    scopus 로고
    • The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
    • Shaw J, Lickey EB, Beck JT et al (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92: 142-166.
    • (2005) Am J Bot , vol.92 , pp. 142-166
    • Shaw, J.1    Lickey, E.B.2    Beck, J.T.3
  • 21
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
    • Shaw J, Lickey EB, Schilling EE, Small RL (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot 94: 275-288.
    • (2007) Am J Bot , vol.94 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 22
    • 84864537276 scopus 로고    scopus 로고
    • Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture
    • Smith DR, Hua J, Lee RW, Keeling PJ (2012) Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture. Mol Phylogenet Evol 65: 33-344.
    • (2012) Mol Phylogenet Evol , vol.65 , pp. 33-344
    • Smith, D.R.1    Hua, J.2    Lee, R.W.3    Keeling, P.J.4
  • 23
    • 80053562458 scopus 로고    scopus 로고
    • A new look at an ancient order: generic revision of the Bangiales (Rhodophyta)
    • Sutherland JE et al (2011) A new look at an ancient order: generic revision of the Bangiales (Rhodophyta). J Phycol 47: 1131-1151.
    • (2011) J Phycol , vol.47 , pp. 1131-1151
    • Sutherland, J.E.1
  • 25
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 26
    • 0037572306 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L
    • Wolf PG, Rowe CA, Sinclair RB, Hasebe M (2003) Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L. DNA Res 10: 59-65.
    • (2003) DNA Res , vol.10 , pp. 59-65
    • Wolf, P.G.1    Rowe, C.A.2    Sinclair, R.B.3    Hasebe, M.4
  • 27
    • 84856109239 scopus 로고    scopus 로고
    • Comparative studies of the complete mitochondrial genomes of four Paphia clams and reconsideration of subgenus Neotapes (Bivalvia: Veneridae)
    • Xu X, Wu X, Yu Z (2012) Comparative studies of the complete mitochondrial genomes of four Paphia clams and reconsideration of subgenus Neotapes (Bivalvia: Veneridae). Gene 494: 17-23.
    • (2012) Gene , vol.494 , pp. 17-23
    • Xu, X.1    Wu, X.2    Yu, Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.