-
1
-
-
0034676455
-
Surfing the p53 network
-
Vogelstein, B., Lane, D. and Levine, A.J. (2000) Surfing the p53 network. Nature, 408, 307-310.
-
(2000)
Nature
, vol.408
, pp. 307-310
-
-
Vogelstein, B.1
Lane, D.2
Levine, A.J.3
-
2
-
-
0038075338
-
Decision making by p53: Life, death and cancer
-
Oren, M. (2003) Decision making by p53: life, death and cancer. Cell Death Differ., 10, 431-442.
-
(2003)
Cell Death Differ
, vol.10
, pp. 431-442
-
-
Oren, M.1
-
3
-
-
18344377030
-
The p53 pathway: Positive and negative feedback loops
-
Harris, S.L. and Levine, A.J. (2005) The p53 pathway: positive and negative feedback loops. Oncogene, 24, 2899-2908.
-
(2005)
Oncogene
, vol.24
, pp. 2899-2908
-
-
Harris, S.L.1
Levine, A.J.2
-
5
-
-
0026849821
-
Definition of a consensus binding site for p53
-
El-Deiry, W.S., Kern, S.E., Pietenpol, J.A., Kinzler, K.W. and Vogelstein, B. (1992) Definition of a consensus binding site for p53. Nat. Gen., 1, 45-49.
-
(1992)
Nat. Gen
, vol.1
, pp. 45-49
-
-
El-Deiry, W.S.1
Kern, S.E.2
Pietenpol, J.A.3
Kinzler, K.W.4
Vogelstein, B.5
-
6
-
-
0026650531
-
A transcriptionally active DNA binding site for human p53 protein complexes
-
Funk, W.D., Pak, D.T., Karas, R.H., Wright, W.E. and Shay, J.W. (1992) A transcriptionally active DNA binding site for human p53 protein complexes. Mol. Cell. Biol., 12, 2866-2871.
-
(1992)
Mol. Cell. Biol
, vol.12
, pp. 2866-2871
-
-
Funk, W.D.1
Pak, D.T.2
Karas, R.H.3
Wright, W.E.4
Shay, J.W.5
-
7
-
-
30344478870
-
A global Map of p53 transcription-factor binding sites in the human genome
-
Wei, C.L., Wu, Q., Vega, V.B., Chiu, K.P., Ng, P., Zhang, T., Shahab, A., Yong, H.C., Fu, Y., Weng, Z. et al. (2006) A global Map of p53 transcription-factor binding sites in the human genome. Cell, 124, 207-219.
-
(2006)
Cell
, vol.124
, pp. 207-219
-
-
Wei, C.L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
-
8
-
-
0036258111
-
The IARC TP53 database: New online mutation analysis and recommendations to users
-
Olivier, M., Eeles, R., Hollstein, M., Khan, M.A., Harris, C.C. and Hainaut, P. (2002) The IARC TP53 database: new online mutation analysis and recommendations to users. Hum. Mutat., 19, 607-614.
-
(2002)
Hum. Mutat
, vol.19
, pp. 607-614
-
-
Olivier, M.1
Eeles, R.2
Hollstein, M.3
Khan, M.A.4
Harris, C.C.5
Hainaut, P.6
-
9
-
-
34248379012
-
Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: Lessons from recent developments in the IARC TP53 database
-
Petitjean, A., Mathe, E., Kato, S., Ishioka, C., Tavtigian, S.V., Hainaut, P. and Olivier, M. (2007) Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database. Hum. Mutat., 28, 622-629.
-
(2007)
Hum. Mutat
, vol.28
, pp. 622-629
-
-
Petitjean, A.1
Mathe, E.2
Kato, S.3
Ishioka, C.4
Tavtigian, S.V.5
Hainaut, P.6
Olivier, M.7
-
10
-
-
77955363995
-
TP53 Mutations in human cancers: Origins, consequences, and clinical use
-
Olivier, M., Hollstein, M. and Hainaut, P. (2010) TP53 Mutations in human cancers: origins, consequences, and clinical use. Cold Spring Harb. Perspect Biol., 2, a001008.
-
(2010)
Cold Spring Harb. Perspect Biol
, vol.2
-
-
Olivier, M.1
Hollstein, M.2
Hainaut, P.3
-
11
-
-
34047174813
-
Structural biology of the tumor suppressor p53 and cancer-associated mutants
-
Joerger, A.C. and Fersht, A.R. (2007) Structural biology of the tumor suppressor p53 and cancer-associated mutants. Adv. Cancer Res., 97, 1-23.
-
(2007)
Adv. Cancer Res
, vol.97
, pp. 1-23
-
-
Joerger, A.C.1
Fersht, A.R.2
-
12
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
-
Cho, Y., Gorina, S., Jeffrey, P.D. and Pavletich, N.P. (1994) Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science, 265, 346-355.
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
13
-
-
33745209412
-
Structural basis of DNA recognition by p53 tetramers
-
Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shaulov, L., Haran, T.E. and Shakked, Z. (2006) Structural basis of DNA recognition by p53 tetramers. Mol. Cell, 22, 741-753.
-
(2006)
Mol. Cell
, vol.22
, pp. 741-753
-
-
Kitayner, M.1
Rozenberg, H.2
Kessler, N.3
Rabinovich, D.4
Shaulov, L.5
Haran, T.E.6
Shakked, Z.7
-
14
-
-
59649112203
-
Crystal structure of a p53 core tetramer bound to DNA
-
Malecka, K.A., Ho, W.C. and Marmorstein, R. (2009) Crystal structure of a p53 core tetramer bound to DNA. Oncogene, 28, 325-333.
-
(2009)
Oncogene
, vol.28
, pp. 325-333
-
-
Malecka, K.A.1
Ho, W.C.2
Marmorstein, R.3
-
15
-
-
75849126765
-
Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer
-
Chen, Y., Dey, R. and Chen, L. (2010) Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer. Structure, 18, 246-256.
-
(2010)
Structure
, vol.18
, pp. 246-256
-
-
Chen, Y.1
Dey, R.2
Chen, L.3
-
16
-
-
77950484709
-
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
-
Kitayner, M., Rozenberg, H., Rohs, R., Suad, O., Rabinovich, D., Honig, B. and Shakked, Z. (2010) Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs. Nat. Struct. Mol. Biol., 17, 423-429.
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 423-429
-
-
Kitayner, M.1
Rozenberg, H.2
Rohs, R.3
Suad, O.4
Rabinovich, D.5
Honig, B.6
Shakked, Z.7
-
17
-
-
79957894792
-
An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity
-
Petty, T.J., Emamzadah, S., Costantino, L., Petkova, I., Stavridi, E.S., Saven, J.G., Vauthey, E. and Halazonetis, T.D. (2011) An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity. EMBO J., 30, 2167-2176.
-
(2011)
EMBO J
, vol.30
, pp. 2167-2176
-
-
Petty, T.J.1
Emamzadah, S.2
Costantino, L.3
Petkova, I.4
Stavridi, E.S.5
Saven, J.G.6
Vauthey, E.7
Halazonetis, T.D.8
-
18
-
-
0035496607
-
Rescuing the function of mutant p53
-
Bullock, A.N. and Fersht, A.R. (2001) Rescuing the function of mutant p53. Nat. Rev. Cancer, 1, 68-76.
-
(2001)
Nat. Rev. Cancer
, vol.1
, pp. 68-76
-
-
Bullock, A.N.1
Fersht, A.R.2
-
19
-
-
0029823529
-
Structure-based rescue of common tumor-derived p53 mutants
-
Wieczorek, A.M., Waterman, J.L., Waterman, M.J. and Halazonetis, T.D. (1996) Structure-based rescue of common tumor-derived p53 mutants. Nat. Med., 2, 1143-1146.
-
(1996)
Nat. Med
, vol.2
, pp. 1143-1146
-
-
Wieczorek, A.M.1
Waterman, J.L.2
Waterman, M.J.3
Halazonetis, T.D.4
-
20
-
-
1842737710
-
A global suppressor motif for p53 cancer mutants
-
Baroni, T.E., Wang, T., Qian, H., Dearth, L.R., Truong, L.N., Zeng, J., Denes, A.E., Chen, S.W. and Brachmann, R.K. (2004) A global suppressor motif for p53 cancer mutants. Proc. Natl Acad. Sci. USA, 101, 4930-4935.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 4930-4935
-
-
Baroni, T.E.1
Wang, T.2
Qian, H.3
Dearth, L.R.4
Truong, L.N.5
Zeng, J.6
Denes, A.E.7
Chen, S.W.8
Brachmann, R.K.9
-
21
-
-
33750036093
-
Structural basis for understanding oncogenic p53 mutations and designing rescue drugs
-
Joerger, A.C., Ang, H.C. and Fersht, A.R. (2006) Structural basis for understanding oncogenic p53 mutations and designing rescue drugs. Proc. Natl Acad. Sci. USA, 103, 15056-15061.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 15056-15061
-
-
Joerger, A.C.1
Ang, H.C.2
Fersht, A.R.3
-
22
-
-
34250800246
-
The screening of the second-site suppressor mutations of the common p53 mutants
-
Otsuka, K., Kato, S., Kakudo, Y., Mashiko, S., Shibata, H. and Ishioka, C. (2007) The screening of the second-site suppressor mutations of the common p53 mutants. Int. J. Cancer, 121, 559-566.
-
(2007)
Int. J. Cancer
, vol.121
, pp. 559-566
-
-
Otsuka, K.1
Kato, S.2
Kakudo, Y.3
Mashiko, S.4
Shibata, H.5
Ishioka, C.6
-
23
-
-
57749178613
-
Structural basis of restoring sequence-specific dna binding and transactivation to mutant p53 by suppressor mutations
-
Suad, O., Rozenberg, H., Brosh, R., Diskin-Posner, Y., Kessler, N., Shimon, L.J., Frolow, F., Liran, A., Rotter, V. and Shakked, Z. (2009) Structural basis of restoring sequence-specific dna binding and transactivation to mutant p53 by suppressor mutations. J. Mol. Biol., 385, 249-265.
-
(2009)
J. Mol. Biol
, vol.385
, pp. 249-265
-
-
Suad, O.1
Rozenberg, H.2
Brosh, R.3
Diskin-Posner, Y.4
Kessler, N.5
Shimon, L.J.6
Frolow, F.7
Liran, A.8
Rotter, V.9
Shakked, Z.10
-
25
-
-
33644878458
-
A quantitative approach to data-collection strategies
-
Bourenkov, G.P. and Popov, A.N. (2006) A quantitative approach to data-collection strategies. Acta. Crystallogr. Sec. D, 62, 58-64.
-
(2006)
Acta. Crystallogr. Sec D
, vol.62
, pp. 58-64
-
-
Bourenkov, G.P.1
Popov, A.N.2
-
26
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Carter, C.W. Jr and Sweet, R.M. (eds) Academic Press, New York
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. In: Carter, C.W. Jr and Sweet, R.M. (eds), Methods in Enzymology, Vol.276. Academic Press, New York, pp. 307-326.
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
33947304781
-
Structure of the human p53 core domain in the absence of DNA
-
Wang, Y., Rosengarth, A. and Luecke, H. (2007) Structure of the human p53 core domain in the absence of DNA. Acta Crystallogr. D, 63, 276-281.
-
(2007)
Acta Crystallogr D
, vol.63
, pp. 276-281
-
-
Wang, Y.1
Rosengarth, A.2
Luecke, H.3
-
28
-
-
0028103275
-
The CCP4 suite - Programs for protein crystallography
-
Bailey, S. (1994) The CCP4 suite - programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr., 50, 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr
, vol.50
, pp. 760-763
-
-
Bailey, S.1
-
29
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658-674.
-
(2007)
J. Appl. Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
30
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P. and Cowtan, K. (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr. D, 60, 2126-2132.
-
(2004)
Acta Crystallogr D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
31
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., Macarthur, M.W., Moss, D.S. and Thornton, J.M. (1993) PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
32
-
-
0024539180
-
Defining the structure of irregular nucleic acids: Conventions and principles
-
Lavery, R. and Sklenar, H. (1989) Defining the structure of irregular nucleic acids: conventions and principles. J. Biomol. Struct. Dyn., 6, 655-667.
-
(1989)
J. Biomol. Struct. Dyn
, vol.6
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
33
-
-
0037080244
-
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects
-
Rocchia, W., Sridharan, S., Nicholls, A., Alexov, E., Chiabrera, A. and Honig, B. (2002) Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects. J. Comput. Chem., 23, 128-137.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 128-137
-
-
Rocchia, W.1
Sridharan, S.2
Nicholls, A.3
Alexov, E.4
Chiabrera, A.5
Honig, B.6
-
34
-
-
70350686719
-
The role of DNA shape in protein-DNA recognition
-
Rohs, R., West, S.M., Sosinsky, A., Liu, P., Mann, R.S. and Honig, B. (2009) The role of DNA shape in protein-DNA recognition. Nature, 461, 1248-1253.
-
(2009)
Nature
, vol.461
, pp. 1248-1253
-
-
Rohs, R.1
West, S.M.2
Sosinsky, A.3
Liu, P.4
Mann, R.S.5
Honig, B.6
-
35
-
-
18144387188
-
Structures of p53 cancer mutants and mechanism of rescue by second-site suppressor mutations
-
Joerger, A.C., Ang, H.C., Veprintsev, D.B., Blair, C.M. and Fersht, A.R. (2005) Structures of p53 cancer mutants and mechanism of rescue by second-site suppressor mutations. J. Bio. Chem., 280, 16030-16037.
-
(2005)
J. Bio. Chem
, vol.280
, pp. 16030-16037
-
-
Joerger, A.C.1
Ang, H.C.2
Veprintsev, D.B.3
Blair, C.M.4
Fersht, A.R.5
-
36
-
-
33947241339
-
Zn2+-dependent misfolding of the p53 DNA binding domain
-
Butler, J.S. and Loh, S.N. (2007) Zn2+-dependent misfolding of the p53 DNA binding domain. Biochemistry, 46, 2630-2639.
-
(2007)
Biochemistry
, vol.46
, pp. 2630-2639
-
-
Butler, J.S.1
Loh, S.N.2
-
37
-
-
77954681706
-
The missing Zinc: P53 misfolding and cancer
-
Loh, S.N. (2010) The missing Zinc: p53 misfolding and cancer. Metallomics, 2, 442-449.
-
(2010)
Metallomics
, vol.2
, pp. 442-449
-
-
Loh, S.N.1
-
38
-
-
34047224955
-
Structure-function-rescue: The diverse nature of common p53 cancer mutants
-
Joerger, A.C. and Fersht, A.R. (2007) Structure-function-rescue: The diverse nature of common p53 cancer mutants. Oncogene, 26, 2226-2242.
-
(2007)
Oncogene
, vol.26
, pp. 2226-2242
-
-
Joerger, A.C.1
Fersht, A.R.2
-
39
-
-
77955175360
-
Pharmacological reactivation of mutant p53: From protein structure to the cancer patient
-
Wiman, K.G. (2010) Pharmacological reactivation of mutant p53: from protein structure to the cancer patient. Oncogene, 29, 4245-4252.
-
(2010)
Oncogene
, vol.29
, pp. 4245-4252
-
-
Wiman, K.G.1
|