Evolutionary Relationships between Rhynchosporium lolii sp. nov. and Other Rhynchosporium Species on Grasses

PLoS ONE

Volumn 8, Issue 10, 2013, Pages

  King, Kevin M ^a,b   West, Jonathan S ^a,c   Brunner, Patrick C ^d   Dyer, Paul S ^b   Fitt, Bruce D L ^a,c  

^a ROTHAMSTED RESEARCH   (United Kingdom)

^b UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^c UNIVERSITY OF HERTFORDSHIRE   (United Kingdom)

^d ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICON; ARTICLE; BARLEY; CONIDIUM; CONTROLLED STUDY; DACTYLIS GLOMERATA; DNA FINGERPRINTING; DNA SEQUENCE; EVOLUTIONARY DEVELOPMENTAL BIOLOGY; FUNGAL COLONIZATION; FUNGAL PLANT DISEASE; FUNGAL STRUCTURES; FUNGUS; FUNGUS GROWTH; FUNGUS HYPHAE; FUNGUS ISOLATION; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PERENNIAL RYEGRASS; PHYLOGENETIC TREE; PLANT FUNGUS INTERACTION; POLYMERASE CHAIN REACTION; RHYNCHOSPORIUM; RHYNCHOSPORIUM AGROPYRI; RHYNCHOSPORIUM COMMUNE; RHYNCHOSPORIUM LOLII; RHYNCHOSPORIUM ORTHOSPORUM; RHYNCHOSPORIUM SECALIS; SCANNING ELECTRON MICROSCOPY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES DIVERSITY; STRAIN IDENTIFICATION; UNITED KINGDOM;

BIOLOGICAL EVOLUTION; CEREALS; EUROPE; HORDEUM; HOST SPECIFICITY; HOST-PATHOGEN INTERACTIONS; LOLIUM; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; PLANT DISEASES; POLYMERASE CHAIN REACTION; SACCHAROMYCETALES; SPORES, FUNGAL;

EID: 84885769364     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0072536     Document Type: Article

References (49)

1. Zhan J, Fitt BDL, Pinnschmidt HO, Oxley SJP, Newton AC, (2008) Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathol 57: 1-14.
2. Shipton WA, Boyd JR, Ali SM, (1974) Scald of barley. Rev. Plant Pathol. 53: 839-861.
3. HGCA website. Available: http://www.hgca.com/publications/documents/cropresearch/barley_growth_guide.pdf. Accessed: 22 Jul 2013.
4. HGCA website. Available: http://publications.hgca.com/publications/documents/cropresearch/G44_-_HGCA_Barley_Disease_Management_Guide_2011_(Complete_version).pdf. Accessed: 22 Jul 2013.
5. Avrova A, Knogge W, (2012) Rhynchosporium commune: a persistent threat to barley cultivation. Mol Plant Pathol 13: 986-997.
6. Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, et al. (2000) On the origin and domestication history of barley (Hordeum vulgare). Mol Biol Evol 17: 499-510.
7. Brunner PC, Schürch S, McDonald BA, (2007) The origin and colonization history of the barley scald pathogen Rhynchosporium secalis. J Evol Biol 20: 1311-1321.
8. Brooks FT, (1928) Observations on Rhynchosporium secalis (Oud.) Davis, leaf blotch of barley and rye. New Phytol 11: 215-219.
9. Welty RE, Metzger RJ, (1996) First report of scald of triticale caused by Rhynchosporium secalis in North America. Plant Dis 80: 1220-1223.
10. Fernandez JP, Welty RE, (1991) Histopathology of orchardgrass infected by Rhynchosporium orthosporum. Mycologia 83: 774-778.
11. Wilkins P, (1973) Infection of Lolium multiflorum with Rhynchosporium species. Plant Pathol 22: 107-111.
12. Zaffarano PL, McDonald BA, Linde CC, (2008) Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium. Evolution 62: 1418-1436.
13. Zaffarano PL, McDonald BA, Linde CC, (2011) Two new species of Rhynchosporium. Mycologia 103: 195-202.
14. Caldwell RM, (1937) Rhynchosporium scald of barley, rye and other grasses. J Agric Res 55: 175-198.
15. Charmet G, Balfourier F, Chatard V, (1996) Taxonomic relationships and interspecific hybridization in the genus Lolium (grasses). Genet Resour Crop Evol 43: 319-327.
16. Preston C, Wakelin AM, Dolman FC, Bostamam Y, Boutsalis P, (2009) A decade of glyphosate-resistant Lolium around the world: mechanisms, genes, fitness, and agronomic management. Weed Sci 57: 435-441.
17. Howlett SG, Cooke BM, (1987) Scanning electron microscopy of sporulation in Rhynchosporium secalis. Trans Br Mycol Soc 88: 547-557.
18. Lange BJ, Boyd WJR, (1968) Preservation of fungal spores by drying on porcelain beads. Phytopathology 58: 1711-1712.
19. Murtagh GJ, Dyer PS, McClure PC, Crittenden PD, (1999) Use of randomly amplified polymorphic DNA markers as a tool to study variation in lichen-forming fungi. Lichenologist 31: 257-267.
20. Hampl V, Pavlícek A, Flegr J, (2001) Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with a freeware program FreeTree: Application to trichomonad parasites. Int J Syst Evol Microbiol 51: 731-735.
21. Page RDM, (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
22. Versalovic J, Koeuth T, Lupski JR, (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19: 6823-6831.
23. Versalovic J, Schneider M, de Bruijn FJ, Lupski JR, (1994) Genomic fingerprinting of bacteria using repetitive sequence based polymerase chain reaction. Methods Mol Cell Biol 5: 25-40.
24. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
25. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
26. Payne RW, Murray DA, Harding SA, Baird DB, Soutar DM (2009) GenStat for Windows (12th Edition) Introduction. VSN International, Hemel Hempstead.
27. Zaffarano PL, McDonald BA, Linde CC, (2009) Phylogeographical analyses reveal global migration patterns of the barley scald pathogen Rhynchosporium secalis. Mol Ecol 18: 279-293.
28. Nicholson P, Rezanoor HN, Simpson DR, Joyce D, (1997) Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay. Plant Pathol 46: 842-856.
29. Goodwin SB, (2002) The barley scald pathogen Rhynchosporium secalis is closely related to the discomycetes Tapesia and Pyrenopeziza. Mycol Res 106: 645-654.
30. Fountaine JM, Shaw MW, Napier B, Ward E, Fraaije BA, (2007) Application of real-time and multiplex polymerase chain reaction assays to study leaf blotch epidemics in barley. Phytopathology 97: 297-303.
31. Lehnackers H, Knogge W (1990) Cytological studies on the infection of barley cultivars with known resistance genotypes by Rhynchosporium secalis. Canadian Journal of Botany, 68, 1953-1961.
32. Fisher MC, Koenig GL, White TJ, Taylor JW, (2002) Molecular and phenotypic description of Coccidioides posadasii sp. nov, previously recognized as the non-Californian population of Coccidioides immitis. Mycologia 94: 73-84.
33. Holland SL, Dyer PS, Bond CJ, James SA, Roberts IN, et al. (2011) Candida argentea sp. nov., a copper and silver resistant yeast species. Fungal Biol 115: 909-918.
34. Stukenbrock EH, Quaedvlieg W, Javan-Nikhah M, Zala M, Crous PW, et al. (2012) Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola). Mycologia 104: 1397-1407.
35. Barrs VR, van Doorn TM, Houbraken J, Kidd SE, Martin P, et al. (2013) Aspergillus felis sp. nov., an emerging agent of invasive aspergillosis in humans, cats and dogs. PLoS One 8: e64871 doi:10.1371/journal.pone.0064871.
36. Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DW, et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 31: 21-31.
37. Dettman JR, Jacobson DJ, Turner E, Pringle A, Taylor JW, (2003) Reproductive isolation and phylogenetic divergence in Neurospora - comparing methods of species recognition in a model eukaryote. Evolution 57: 2721-2741.
38. Taylor JW, Turner E, Pringle A, Dettman J, Johannesson H (2006). Fungal species: thoughts on their recognition, maintenance and selection. In: Fungi in the Environment (Eds GM Gadd, SC Watkinson & PS Dyer), 313-339. Cambridge University Press, Cambridge.
39. Crouch JA, Tredway LP, Clarke BB, Hillman BI, (2009) Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities. Mol Ecol 18: 123-135.
40. Lutman PJW, Storkey J, Martin H, Holland J, (2009) Abundance of weeds in arable fields in southern England in 2007/08. Asp Appl Biol 91: 163-168.
41. Kastelein P, Köhl J, Gerlagh M, Goossen-van de Geijn HM, (2002) Inoculum sources of the tan spot fungus Pyrenophora tritici-repentis in The Netherlands. Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet 67: 257-267.
42. Dyer PS, Bradshaw RE, (2002) First report of apothecia of Tapesia yallundae occurring on the wild grass Holcus lanatus (Yorkshire fog) in New Zealand. Plant Pathol 51: 806.
43. Gachomo EW, Dehne H-W, Steiner U, (2009) Efficacy of triazoles and strobilurins in controlling black spot disease of roses caused by Diplocarpon rosae. Ann Appl Biol 154: 259-267.
44. Boys EF, Roques SE, Ashby AM, Evans N, Latunde-Dada AO, et al. (2007) Resistance to infection by stealth: Brassica napus (winter oilseed rape) and Pyrenopeziza brassicae (light leaf spot). Eur J Plant Pathol 118: 307-321.
45. Boys EF, Roques SE, West JS, Werner CP, King GJ, et al. (2012) Effects of R gene-mediated resistance in Brassica napus (oilseed rape) on asexual and sexual sporulation of Pyrenopeziza brassicae (light leaf spot). Plant Pathol 61: 543-554.
46. Fitzpatrick DA, (2012) Horizontal gene transfer in fungi. FEMS Microbiol Lett 329: 1-8.
47. Davis H, Fitt BDL, (1990) Symptomless infection of Rhynchosporium secalis on leaves of winter barley. Mycol Res 94: 557-560.
48. Taylor JMG, Paterson LJ, Havis ND, (2010) A quantitative real-time PCR assay for the detection of Ramularia collo-cygni from barley (Hordeum vulgare). Lett Appl Microbiol 50: 493-499.
49. Walters DR, Havis ND, Oxley SJ, (2008) Ramularia collo-cygni: the biology of an emerging pathogen of barley. FEMS Microbiol Lett 279: 1-7.