Characterization and genomic analysis of two Staphylococcus aureus bacteriophages isolated from poultry/livestock farms

Journal of General Virology

Volumn 94, Issue PART 11, 2013, Pages 2569-2576

  Yoon, Hyunjin ^a   Yun, Jiae ^b   Lim, Jeong A ^c   Roh, Eunjung ^c   Jung, Kyu Seok ^c   Chang, Yoonjee ^b   Ryu, Sangryeol ^b   Heu, Sunggi ^c  

^a Eulji University   (South Korea)

^b Seoul National University   (South Korea)

^c National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGE DNA; DNA BINDING PROTEIN; GENOMIC DNA; SINGLE STRANDED DNA;

ADSORPTION; ARTICLE; BACTERIOPHAGE; BIOLOGICAL CONTROL AGENT; COMPARATIVE STUDY; DNA REPLICATION; GENOME; GENOMICS; HOST PATHOGEN INTERACTION; LIVESTOCK; LYSOGENIZATION; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POULTRY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STAPHYLOCOCCUS AUREUS; TRANSMISSION ELECTRON MICROSCOPY;

ANIMAL HUSBANDRY; ANIMALS; GENOME, VIRAL; GENOMICS; HOST SPECIFICITY; HUMANS; LIVESTOCK; LYSOGENY; MOLECULAR SEQUENCE DATA; POULTRY; SEQUENCE ANALYSIS, DNA; SIPHOVIRIDAE; SOIL MICROBIOLOGY; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS PHAGES;

EID: 84885655060     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.053991-0     Document Type: Article

References (35)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Besemer, J., Lomsadze, A. & Borodovsky, M. (2001). GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 29, 2607-2618.
3. Betley, M. J. & Mekalanos, J. J. (1985). Staphylococcal enterotoxin A is encoded by phage. Science 229, 185-187.
4. Colland, F., Barth, M., Hengge-Aronis, R. & Kolb, A. (2000). Sigma factor selectivity of Escherichia coli RNA polymerase: role for CRP, IHF and lrp transcription factors. EMBO J 19, 3028-3037.
5. Delcher, A. L., Bratke, K. A., Powers, E. C. & Salzberg, S. L. (2007). Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679.
6. DeLeo, F. R. & Chambers, H. F. (2009). Reemergence of antibioticresistant Staphylococcus aureus in the genomics era. J Clin Invest 119, 2464-2474.
7. Dulon, M., Haamann, F., Peters, C., Schablon, A. & Nienhaus, A. (2011). MRSA prevalence in European healthcare settings: a review. BMC Infect Dis 11, 138.
8. Fauquet, C., Mayo, M. A., Maniloff, J., Desselberger, U. & Bali, L. A. (editors) (2005). Virus Taxonomy: Classification and Nomenclature of Viruses: Eighth Report of the International Committee on the Taxonomy of Viruses. San Diego: Elsevier Academic Press.
9. Ferrer, M. D., Quiles-Puchalt, N., Harwich, M. D., Tormo-Más, M. Á., Campoy, S., Barbé, J., Lasa, Í., Novick, R. P., Christie, G. E. & Penadés, J. R. (2011). RinA controls phage-mediated packaging and transfer of virulence genes in Gram-positive bacteria. Nucleic Acids Res 39, 5866-5878.
10. García, P., Martínez, B., Obeso, J. M., Lavigne, R., Lurz, R. & Rodríguez, A. (2009). Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment. Appl Environ Microbiol 75, 7663-7673.
11. Hofnung, M., Jezierska, A. & Braun-Breton, C. (1976). lamB mutations in E. coli K12: growth of lambda host range mutants and effect of nonsense suppressors. Mol Gen Genet 145, 207-213.
12. Kim, M. & Ryu, S. (2011). Characterization of a T5-like coliphage, SPC35, and differential development of resistance to SPC35 in Salmonella enterica serovar typhimurium and Escherichia coli. Appl Environ Microbiol 77, 2042-2050.
13. Kronpinski, A. M., Mazzocco, A., Waddell, T. E., Lingohr, E. & Johnson, R. P. (2009). Enumeration of bacteriophages by double agar overlay plaque assay. In Isolation and Characterization, and Interaction (Bacteriophages: Methods and Protocol vol. 1), pp. 69-76. Edited by M. R. Clokie & A. M. Kropinski. New York: Humana Press.
14. Kutateladze, M. & Adamia, R. (2010). Bacteriophages as potential new therapeutics to replace or supplement antibiotics. Trends Biotechnol 28, 591-595.
15. Kwan, T., Liu, J., DuBow, M., Gros, P. & Pelletier, J. (2005). The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci U S A 102, 5174-5179.
16. Letellier, L., Plancon, L. & Boulanger, P. (2007). Transfer of DNA from phage to host. In Bacteriophage: Genetics and Molecular Biology, pp. 208-209. Edited by S. McGrath & D. Van Sinderen. Norfolk, UK: Caister Academic Press.
17. Little, J. W. (2007). Prophage induction of phage. In Bacteriophage: Genetics and Molecular Biology, pp. 251-272. Edited by S. McGrath & D. Van Sinderen. Norfolk, UK: Caister Academic Press.
18. Mann, N. H. (2008). The potential of phages to prevent MRSA infections. Res Microbiol 159, 400-405.
19. Mazzocco, A., Waddell, T. E., Lingohr, E. & Johnson, R. P. (2009). Enumeration of bacteriophages using the small drop plaque assay system. In Isolation and Characterization, and Interaction (Bacteriophages: Methods and Protocol vol. 1), pp. 81-85. Edited by M. R. Clokie & A. M. Kropinski. New York: Humana Press.
20. Narita, S., Kaneko, J., Chiba, J., Piémont, Y., Jarraud, S., Etienne, J. & Kamio, Y. (2001). Phage conversion of Panton-Valentine leukocidin in Staphylococcus aureus: molecular analysis of a PVL-converting phage, phiSLT. Gene 268, 195-206.
21. Quevillon, E., Silventoinen, V., Pillai, S., Harte, N., Mulder, N., Apweiler, R. & Lopez, R. (2005). InterProScan: protein domains identifier. Nucleic Acids Res 33 (Web Server issue), W116-W120.
22. Rashel, M., Uchiyama, J., Takemura, I., Hoshiba, H., Ujihara, T., Takatsuji, H., Honke, K. & Matsuzaki, S. (2008). Tail-associated structural protein gp61 of Staphylococcus aureus phage phi MR11 has bifunctional lytic activity. FEMS Microbiol Lett 284, 9-16.
23. Rhoads, D. D., Wolcott, R. D., Kuskowski, M. A., Wolcott, B. M., Ward, L. S. & Sulakvelidze, A. (2009). Bacteriophage therapy of venous leg ulcers in humans: results of a phase I safety trial. J Wound Care 18, 237-238, 240-243.
24. Schattner, P., Brooks, A. N. & Lowe, T. M. (2005). The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 33 (Web Server issue), W686-W689.
25. Stegger, M., Price, L. B., Larsen, A. R., Gillece, J. D., Waters, A. E., Skov, R. & Andersen, P. S. (2012). Genome sequence of Staphylococcus aureus strain 11819-97, an ST80-IV European community-acquired methicillin-resistant isolate. J Bacteriol 194, 1625-1626.
26. Suzek, B. E., Ermolaeva, M. D., Schreiber, M. & Salzberg, S. L. (2001). A probabilistic method for identifying start codons in bacterial genomes. Bioinformatics 17, 1123-1130.
27. Tallent, S. M., Langston, T. B., Moran, R. G. & Christie, G. E. (2007). Transducing particles of Staphylococcus aureus pathogenicity island SaPI1 are comprised of helper phage-encoded proteins. J Bacteriol 189, 7520-7524.
28. Tétart, F., Repoila, F., Monod, C. & Krisch, H. M. (1996). Bacteriophage T4 host range is expanded by duplications of a small domain of the tail fiber adhesin. J Mol Biol 258, 726-731.
29. van Wamel, W. J., Rooijakkers, S. H., Ruyken, M., van Kessel, K. P. & van Strijp, J. A. (2006). The innate immune modulators staphylococcal complement inhibitor and chemotaxis inhibitory protein of Staphylococcus aureus are located on beta-hemolysin-converting bacteriophages. J Bacteriol 188, 1310-1315.
30. Vanderhaeghen, W., Hermans, K., Haesebrouck, F. & Butaye, P. (2010). Methicillin-resistant Staphylococcus aureus (MRSA) in food production animals. Epidemiol Infect 138, 606-625.
31. Werts, C., Michel, V., Hofnung, M. & Charbit, A. (1994). Adsorption of bacteriophage lambda on the LamB protein of Escherichia coli K-12: point mutations in gene J of lambda responsible for extended host range. J Bacteriol 176, 941-947.
32. Wilcox, S. A., Toder, R. & Foster, J. W. (1996). Rapid isolation of recombinant lambda phage DNA for use in fluorescence in situ hybridization. Chromosome Res 4, 397-404.
33. Winkler, K. C., de Waart, J., Grootsen, C., Zegers, B. J. M., Tellier, N. F. & Vertregt, C. D. (1965). Lysogenic conversion of staphylococci to loss of beta-toxin. J Gen Microbiol 39, 321-333.
34. Yamaguchi, T., Hayashi, T., Takami, H., Nakasone, K., Ohnishi, M., Nakayama, K., Yamada, S., Komatsuzawa, H. & Sugai, M. (2000). Phage conversion of exfoliative toxin A production in Staphylococcus aureus. Mol Microbiol 38, 694-705.
35. Zou, D., Kaneko, J., Narita, S. & Kamio, Y. (2000). Prophage, phiPV83-pro, carrying Panton-Valentine leukocidin genes, on the Staphylococcus aureus P83 chromosome: comparative analysis of the genome structures of phiPV83-pro, phiPVL, phi11, and other phages. Biosci Biotechnol Biochem 64, 2631-2643.