Translocation junctions in TCF3-PBX1 acute lymphoblastic leukemia/lymphoma cluster near transposable elements

Mobile DNA

Volumn 4, Issue 1, 2013, Pages

  Rodić, Nemanja ^a   Zampella, John G ^a,b   Cornish, Toby C ^a   Wheelan, Sarah J ^c   Burns, Kathleen H ^a,d,e  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c JOHNS HOPKINS UNIVERSITY   (United States)

^d JOHNS HOPKINS UNIVERSITY   (United States)

^e JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR 7 LIKE 1; TRANSCRIPTION FACTOR PBX1;

ACUTE LYMPHOBLASTIC LEUKEMIA; ARTICLE; CHROMOSOME TRANSLOCATION; GENE TRANSLOCATION; HUMAN; INTERSPERSED REPEAT; PRIORITY JOURNAL; TANDEM REPEAT; TRANSPOSON;

EID: 84885536194     PISSN: None     EISSN: 17598753     Source Type: Journal    
DOI: 10.1186/1759-8753-4-22     Document Type: Article

References (17)

1. Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Lin C, Yang L, Tanasa B, Hutt K, Ju BG, Ohgi K, Zhang J, Rose DW, Fu XD, Glass CK, Rosenfeld MG, Cell 2009 139 6 1069 1083 10.1016/j.cell.2009.11.030 19962179
2. Chromosomal translocation mechanisms at intronic alu elements in mammalian cells. Elliott B, Richardson C, Jasin M, Molecular cell 2005 17 6 885 894 10.1016/j.molcel.2005.02.028 15780943 (Pubitemid 40386948)
3. Site-specific DNA cleavage within the MLL breakpoint cluster region induced by topoisomerase II inhibitors. Aplan PD, Chervinsky DS, Stanulla M, Burhans WC, Blood 1996 87 7 2649 2658 8639880 (Pubitemid 26102213)
4. Etoposide-initiated MLL rearrangements detected at high frequency in human primitive hematopoietic stem cells with in vitro and in vivo long-term repopulating potential. Libura J, Ward M, Solecka J, Richardson C, Eur J Haematol 2008 81 3 185 195 10.1111/j.1600-0609.2008.01103.x 18510699
5. Landscape of somatic retrotransposition in human cancers. Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ 3rd, Lohr JG, Harris CC, Ding L, Wilson RK, Wheeler DA, Gibbs RA, Kucherlapati R, Lee C, Kharchenko PV, Park PJ, Cancer Genome Atlas Research Network, Science 2012 337 6097 967 971 10.1126/science.1222077 22745252
6. Leukemia and lymphoma: a cost of doing business for adaptive immunity. Schlissel MS, Kaffer CR, Curry JD, Gen Dev 2006 20 12 1539 1544 10.1101/gad.1446506 (Pubitemid 43901092)
7. Identification of sequence motifs at the breakpoint junctions in three t(1;9)(p36.3;q34) and delineation of mechanisms involved in generating balanced translocations. Gajecka M, Pavlicek A, Glotzbach CD, Ballif BC, Jarmuz M, Jurka J, Shaffer LG, Hum Genet 2006 120 4 519 526 10.1007/s00439-006-0222-1 16847692 (Pubitemid 44669785)
8. Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specificity. Tsai AG, Lu H, Raghavan SC, Muschen M, Hsieh CL, Lieber MR, Cell 2008 135 6 1130 1142 10.1016/j.cell.2008.10.035 19070581
9. LINE-1 elements in structural variation and disease. Beck CR, Garcia-Perez JL, Badge RM, Moran JV, Ann Rev Genom Hum Genet 2011 12 187 215 10.1146/annurev-genom-082509-141802
10. A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R, Wilson RK, Eichler EE, Cell 2010 143 5 837 847 10.1016/j.cell.2010.10.027 21111241
11. Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements. Liu P, Erez A, Nagamani SC, Dhar SU, Kołodziejska KE, Dharmadhikari AV, Cooper ML, Wiszniewska J, Zhang F, Withers MA, Bacino CA, Campos-Acevedo LD, Delgado MR, Freedenberg D, Garnica A, Grebe TA, Hernández-Almaguer D, Immken L, Lalani SR, McLean SD, Northrup H, Scaglia F, Strathearn L, Trapane P, Kang SH, Patel A, Cheung SW, Hastings PJ, Stankiewicz P, Lupski JR, Bi W, Cell 2011 146 6 889 903 10.1016/j.cell.2011.07. 042 21925314
12. Chromosome 12p deletions in TEL-AML1 childhood acute lymphoblastic leukemia are associated with retrotransposon elements and occur postnatally. Wiemels JL, Hofmann J, Kang M, Selzer R, Green R, Zhou M, Zhong S, Zhang L, Smith MT, Marsit C, Loh M, Buffler P, Yeh RF, Cancer Res 2008 68 23 9935 9944 10.1158/0008-5472.CAN-08-2139 19047175
13. The 2008 WHO classification of lymphomas: implications for clinical practice and translational research. Jaffe ES, Hematol/Educ Prog Am Soc Hematol 2008 2009 523 531
14. A conditional mouse model of synovial sarcoma: insights into a myogenic origin. Haldar M, Hancock JD, Coffin CM, Lessnick SL, Capecchi MR, Cancer Cell 2007 11 4 375 388 10.1016/j.ccr.2007.01.016 17418413 (Pubitemid 46518310)
15. Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Lynch VJ, Leclerc RD, May G, Wagner GP, Nature genetics 2011 43 11 1154 1159 10.1038/ng.917 21946353
16. Possible involvement of SINEs in mammalian-specific brain formation. Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, Kokubo N, Kimura-Yoshida C, Matsuo I, Sumiyama K, Saitou N, Shimogori T, Okada N, Proc Nat Acad Sci USA 2008 105 11 4220 4225 10.1073/pnas.0709398105 18334644 (Pubitemid 351754361)
17. Transformation of a transposon into a derived prolactin promoter with function during human pregnancy. Emera D, Wagner GP, Proc Nat Acad Sci USA 2012 109 28 11246 11251 10.1073/pnas.1118566109 22733751