DNA 'barcoding' of Schistosoma mansoni across sub-Saharan Africa supports substantial within locality diversity and geographical separation of genotypes

Acta Tropica

Volumn 128, Issue 2, 2013, Pages 250-260

  Webster, Bonnie L ^a   Webster, Joanne P ^b   Gouvras, Anouk N ^a   Garba, Amadou ^c   Lamine, Mariama S ^c   Diaw, Oumar T ^d   Seye, Mohmoudane M ^d   Tchuem Tchuenté, Louis Albert ^e,f   Simoonga, Christopher ^g   Mubila, Likezo ^g   Mwanga, Joseph R ^h   Lwambo, Nicholas J S ^h   Kabatereine, Narcis B ⁱ   Lange, Charles N ^j   Kariuki, Curtis ^j   Mkoji, Gerald M ^k   Rollinson, David ^a   Stothard, J Russell ^l  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

^c Réseau International Schistosomoses Environnement Amenagement et Lutte ^*  (Niger)

^d Institut Senegalais de Recherches AgrEcoles Dakar   (Senegal)

^e UNIVERSITY OF YAOUNDÉ I   (Cameroon)

^f Center for Schistosomiasis and Parasitology   (Cameroon)

^g UNIVERSITY OF ZAMBIA   (Zambia)

^h NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (Tanzania)

ⁱ MINISTRY OF HEALTH   (Uganda)

^j INSTITUTE OF PRIMATE RESEARCH   (Kenya)

^k KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^l LIVERPOOL SCHOOL OF TROPICAL MEDICINE   (United Kingdom)

more..

Author keywords

Cox1; Evolution; Molecular epidemiology; Phylogeography; Schistosoma mansoni

Indexed keywords

COLONIZATION; EPIDEMIOLOGY; EVOLUTION; GEOGRAPHICAL DISTRIBUTION; MOLECULAR ANALYSIS; PARASITE; PHYLOGEOGRAPHY; POPULATION GENETICS; SNAIL;

AFRICA SOUTH OF THE SAHARA; ARTICLE; COX1 GENE; DNA BARCODING; GENE SEQUENCE; GENETIC EPIDEMIOLOGY; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HOST PARASITE INTERACTION; LARVAL STAGE; MICROBIAL COLONIZATION; MITOCHONDRIAL GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; SCHISTOSOMA MANSONI; UNINDEXED SEQUENCE;

AFRICA; ARABIAN PENINSULA; MADAGASCAR; SOUTH AMERICA;

BIOMPHALARIA; GASTROPODA; SCHISTOSOMA MANSONI; VERMES;

COX1; EVOLUTION; MOLECULAR EPIDEMIOLOGY; PHYLOGEOGRAPHY; SCHISTOSOMA MANSONI;

AFRICA SOUTH OF THE SAHARA; ANIMALS; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; DNA BARCODING, TAXONOMIC; DNA, HELMINTH; ELECTRON TRANSPORT COMPLEX IV; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; SCHISTOSOMA MANSONI; SCHISTOSOMIASIS MANSONI; SEQUENCE ANALYSIS, DNA;

EID: 84885474477     PISSN: 0001706X     EISSN: 18736254     Source Type: Journal    
DOI: 10.1016/j.actatropica.2012.08.009     Document Type: Article

References (44)

1. Besansky N.J., Severson D.W., Ferdig M.T. DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you. Trends Parasitol. 2003, 19:545-546.
2. Blair D., Le T.H., Després L., McManus D.P. Mitochondrial genes of Schistosoma mansoni. Parasitology 1999, 119:303-313.
3. Després L., Imbert-Establet D., Combes C., Bonhomme F. Molecular evidence linking hominid evolution to recent radiation of schistosomes (Platyhelminthes: Trematoda). Mol. Phylogenet. Evol. 1992, 1:295-304.
4. Doenhoff M.J., Kusel J.R., Coles G.C., Cioli D. Resistance of Schistosoma mansoni to praziquantel: is there a problem?. Trans. R. Soc. Trop. Med. Hyg. 2002, 96:465-469.
5. Doenhoff M.J., Hagan P., Cioli D., Southgate V., Pica-Mattoccia L., Botros S., Coles G., Tchuem Tchuenté L.A., Mbaye A., Engels D. Praziquantel: its use in control of schistosomiasis in sub Saharan Africa and current research needs. Parasitology 2009, 136:1825-1835.
6. Dumont M., Moné H., Mouahid G., Idris M.A., Shaban M., Boissier J. Influence of patterns of exposure, parasite genetic diversity and sex on the degree of protection against reinfection with Schistosoma mansoni. Parasitol. Res. 2007, 101:247-252.
7. Fallon P.G., Doenhoff M.J. Drug-resistant schistosomiasis: resistance to praziquantel and oxamniquine induced in Schistosoma mansoni in mice is drug specific. Am. J. Trop. Med. Hyg. 1994, 51:83-88.
8. Feng Z., Curtis J., Minchella D.J. The influence of drug treatment on the maintenance of schistosome genetic diversity. J. Math. Biol. 2001, 43:52-68.
9. Fenwick A., Webster J.P. Schistosomiasis: challenges for control, treatment and drug resistance. Curr. Opin. Infect. Dis. 2006, 19:577-582.
10. Fenwick A., Webster J.P., Bosque-Oliva E., Blair L., Fleming F.M., Zhang Y., Garba A., Stothard J.R., Gabrielli A.F., Clements A.C.A., Kabatereine N.B., Toure S., Dembele R., Nyandindi U., Mwansa J., Koukounari A. The Schistosomiasis Control Initiative (SCI): rationale, development and implementation from 2002-2008. Parasitology 2009, 136:1719-1730.
11. Frezal L., Leblois R. Four years of DNA barcoding: current advances and prospects. Infect. Genet. Evol. 2008, 8:727-736.
12. Garba A., Lamine M.S., Barkir N., Djibo A., Sofo B., Gouvra A.N., Labbo R., Sebangou H., Webster J.P., Fenwick A., Utzinger J. Efficacy and safety of two closely spaced doses of praziquantel against Schistosoma haematobium and S. mansoni in school-aged children and re-infection patterns in Niger. Acta Trop. 2013, 128:334-344.
13. Gentile R., Oliveira G. Brazilian studies on the genetics of Schistosoma mansoni. Acta Trop. 2008, 108:175-178.
14. Gower C.M., Shrivastava J., Lamberton P.H.L., Rollinson D., Webster B.L., Emery A., Kabatereine N.B., Webster J.P. Development and application of an ethically and epidemiologically advantageous assay for the multi-locus microsatellite analysis of Schistosoma mansoni. Parasitology 2007, 134:523-536.
15. Gower C.M., Gouvras A.N., Lamberton P.H.L., Deol A., Shrivastava J., Mutombo P.N., Mbuh J.V., Norton A.J., Webster B.L., Stothard J.R., Garba A., Kariuki C., Lange C., Mkoji G.M., Kabatereine N.B., Gabrielli A.F., Rudge J.W., Fenwick A., Sacko M., Dembelé R., Lwambo N.J.S., Tchuem Tchuenté L.A., Rollinson D., Webster J.P. Molecular epidemiology and evolution of schistosomes in sub-Saharan Africa: genetic analysis of Schistosoma mansoni and S. haematobium from six African countries. Acta Trop. 2013, 128:261-274.
16. Hanelt B., Mwangi I.N., Kinuthia J.M., Maina G.M., Agola L.E., Mutuku M.W., Steinauer M.L., Agwanda B.R., Kigo L., Mungai B.N., Loker E.S., Mkoji G.M. Schistosomes of small mammals from the Lake Victoria Basin, Kenya: new species, familiar species, and implications for schistosomiasis control. Parasitology 2010, 137:1109-1118.
17. Ismail M., Botros S., Metwally A., William S., Farghally A., Tao L.F., Day T.A., Bennett J.L. Resistance to praziquantel: direct evidence from Schistosoma mansoni isolated from Egyptian villagers. Am. J. Trop. Med. Hyg. 1999, 60:932-935.
18. Kane R.A., Rollinson D. Repetitive sequences in the ribosomal DNA internal transcribed spacer of Schistosoma haematobium, Schistosoma intercalatum and Schistosoma mattheei. Mol. Biochem. Parasitol. 1994, 63:153-156.
19. Karvonen A., Rellstab C., Louhi K.R., Jokela J. Synchronous attack is advantageous: mixed genotype infections lead to higher infection success in trematode parasites. Proc. R. Soc. B 2011, 279:171-176.
20. Knopp J., Stothard J.R., Rollinson D., Mohammed K.A., Khamis I.S., Martib H., Utzingera J. From morbidity control to transmission control: time to change tactics against helminths in Unguja. Acta Trop. 2013, 128:412-422.
21. Lamberton P.H.L., Hogan S.C., Katbatereine N.B., Fenwick A., Webster J.P. In vitro praziquantel test capable of detecting reduced in vivo efficacy in Schistosoma mansoni human infections. Am. J. Trop. Med. Hyg. 2010, 83:1340-1347.
22. Le T.H., Blair D., McManus D.P. Mitochondrial genomes of human helminths and their use as markers in population genetics and phylogeny. Acta Trop. 2000, 77:243-256.
23. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
24. Littlewood D.T.J., Lockyer A.E., Webster B.L., Johnston D.A., Le T.H. The complete mitochondrial genomes of Schistosoma haematobium and Schistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms. Mol. Phylogenet. Evol. 2006, 39:452-467.
25. Lockyer A.E., Olson P.D., Ostergaard P., Rollinson D., Johnston D.A., Attwood S.W., Southgate V.R., Horak P., Snyder S.D., Le T.H., Agatsuma D.P., McManus D.P., Carmichael A.C., Naem S., Littlewood T.J. The phylogeny of the Schistosomatidae based on three genes with emphasis on the interrelationships of Schistosoma Weinland, 1858. Parasitology 2003, 126:203-224.
26. Lovejoy P.E. The volume of the Atlantic slave trade-a synthesis. J. Afr. Hist. 1982, 23:473-501.
27. Morgan J.A.T., DeJong R.J., Kazibwe F., Mkoji G.M., Loker E.S. A newly-identified lineage of Schistosoma. Int. J. Parasitol. 2003, 33:977-985.
28. Morgan J.A., Dejong R.J., Adeoye G.O., Ansa E.D., Barbosa C.S., Bremond P., Cesari I.M., Charbonnel N., Correa L.R., Coulibaly G., D'Andrea P.S., De Souza C.P., Doenhoff M.J., File S., Idris M.A., Incani R.N., Jarne P., Karanja D.M., Kazibwe F., Kpikpi J., Lwambo N.J., Mabaye A., Magalhaes L.A., Makundi A., Mone H., Mouahid G., Muchemi G.M., Mungai B.N., Sene M., Southgate V., Tchuente L.A., Theron A., Yousif F., Zanotti-Magalhaes E.M., Mkoji G.M., Loker E.S. Origin and diversification of the human parasite Schistosoma mansoni. Mol. Ecol. 2005, 14:3889-3902.
29. Norton A.J., Gower C.M., Lamberton P.H.L., Webster B.L., Lwambo N.J.S., Blair L., Fenwick A., Webster J.P. Genetic consequences of mass human chemotherapy for Schistosoma mansoni: population structure pre- and post-praziquantel treatment in Tanzania. Am. J. Trop. Med. Hyg. 2010, 83:951-957.
30. Pieri O.S., Barbosa C.S., Moza P.G. Schistosomiasis control based on repeated chemotherapy in a rural village of the sugar-cane zone in northeast Brazil. Mem. Inst. Oswaldo Cruz 1998, 93(Suppl. I):259-264.
31. Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
32. Rollinson D. A wake up call for urinary schistosomiasis: reconciling research effort and public health importance. Parasitology 2009, 136:1593-1610.
33. Rollinson D., Webster J.P., Webster B.L., Nyakaana S., Jørgensen A., Stothard J.R. Genetic diversity of schistosomes and snails: implications for control. Parasitology 2009, 136:1801-1811.
34. Savioli L., Gabrielli A.F., Montresor A., Chitsulo L., Engels D. Schistosomiasis control in Africa: 8 years after World Health Assembly Resolution 54.19. Parasitology 2009, 136:1677-1681.
35. Skelly P.J., Stein L.D., Shoemaker C.B. Expression of Schistosoma mansoni genes involved in anaerobic and oxidative glucose metabolism during the cercaria to adult transformation. Mol. Biochem. Parasitol. 1993, 60:93-104.
36. Snyder S.D., Loker E.S. Evolutionary relationships among the Schistosomatidae (Platyhelminthes: Digenea) and an Asian origin for Schistosoma. J. Parasitol. 2000, 86:283-288.
37. Standley C.J., Kabatereine N.B., Lange C.N., Lwambo N.J.S., Stothard J.R. Molecular epidemiology and phylogeography of Schistosoma mansoni around Lake Victoria. Parasitology 2010, 137:1937-1949.
38. Stothard J.R., Webster B.L., Weber T., Nyakaana S., Webster J.P., Kazibwe F., Kabatereine N.B., Rollinson D. Molecular epidemiology of Schistosoma mansoni in Uganda: DNA barcoding reveals substantive genetic diversity within Lake Albert and Victoria populations. Parasitology 2009, 136:1813-1824.
39. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
40. Utzinger J., Raso G., Brooker S., de Savigny D., Tanner M., Ornbjerg N., Singer B.H., N'Goran E.K. Schistosomiasis and neglected tropical diseases: towards integrated and sustainable control and a word of caution. Parasitology 2009, 136:1859-1874.
41. Webster J.P., Gower C.M., Norton A.J. Evolutionary concepts in predicting and evaluating the impact of mass-chemotherapy schistosomiasis control programmes on parasites and their hosts. Evol. Appl. 2008, 1:66-83.
42. Webster J.P., Oliveira G., Rollinson D., Gower C.M. Schistosome genomes: a wealth of information. Trends Parasitol. 2010, 26:103-106.
43. WHO, 2002. Prevention and control of schistosomiasis and soil-transmitted helminthiasis: report of a WHO expert committee. WHO Tech. Rep. Ser. 912, 1-57.
44. Zarowiecki M., Huyse T., Littlewood D.T. Making the most of mitochondrial genomes - markers for phylogeny, molecular ecology and barcodes in Schistosoma Platyhelminthes: Digenea. Int. J. Parasitol. 2007, 37:1401-1418.