Genetic variation, heritability, divergence and biomass accumulation of rice genotypes resistant to bacterial blight revealed by quantitative traits and ISSR markers

Physiologia Plantarum

Volumn 149, Issue 3, 2013, Pages 432-447

  Mazid, Muhammad S ^a   Rafii, Mohd Y ^a   Hanafi, Mohamed M ^a   Rahim, Harun A ^b   Latif, Md Abdul ^a,c  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b MALAYSIAN NUCLEAR AGENCY   (Malaysia)

^c BANGLADESH RICE RESEARCH INSTITUTE   (Bangladesh)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

MICROSATELLITE DNA;

ARTICLE; BIOMASS; CLUSTER ANALYSIS; COMPARATIVE STUDY; GENETIC VARIABILITY; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; IMMUNOLOGY; PLANT DEVELOPMENT; PLANT DISEASE; PRINCIPAL COMPONENT ANALYSIS; QUANTITATIVE TRAIT; RANDOM AMPLIFIED POLYMORPHIC DNA; RICE;

BIOMASS; CLUSTER ANALYSIS; GENETIC VARIATION; GENOTYPE; MICROSATELLITE REPEATS; ORYZA SATIVA; PLANT DEVELOPMENT; PLANT DISEASES; PRINCIPAL COMPONENT ANALYSIS; QUANTITATIVE TRAIT, HERITABLE; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

EID: 84885472768     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/ppl.12054     Document Type: Article

References (62)

1. Abdullah N, Yusop MR, Ithnin M, Saleh G, Latif MA (2011) Genetic variability of oil palm parental genotypes and performance of its' progenies as revealed by molecular markers and quantitative traits. CR Biol 334: 290-299
2. Ahmad H, Razvi SM, Bhat MA, Najeeb S, Wani N, Habib M, Mir MR, Gupta BB (2010) Genetic variability and genetic divergence of important rice (Oryza sativa L.) varieties. IJCR 4: 33-37
3. Appalaswamy A, Reddy GLK (2004) Genetic divergence and heterosis studies of mungbean (Vigna radiata (L.) Wilczek). Legume Res 21: 115-118
4. Bhuyan N, Borah BK, Sarma RN (2007) Genetic diversity analysis in traditional lowland rice (Oryza sativa L.) of Assam using RAPD and ISSR markers. Curr Sci India 93: 967-972
5. Borba T, Brondani R, Rangel P, Brondani C (2009) Microsatellite marker-mediated analysis of the EMBRAPA rice core collection genetic diversity. Genetica 137: 293-304
6. Burton GW (1951) Quantitative inheritance in Pearl millet (P. glaucum). Agron J 43: 409-417
7. Burton GW, DeVane EM (1953) Estimating heritability in tall fescue (Festuca arundinacea) from replicated clonal material. Agron J 45: 478-481
8. Cao QJ, Lu BR, Xia H, Rong J, Sala F, Spada A, Grassi F (2006) Genetic diversity and origin of weedy rice (Oryza sativa f. spontanea) populations found in North-Eastern China revealed by Simple Sequence Repeat (SSR) markers. Ann Bot 98: 1241-1252
9. Coomes J, Hall DO, Long SP, Scurlock SMO (1987) Chlorophyll Determination. Techniques in Bioproductivity and Photosynthesis. Pergamon press, Oxford, pp 223
10. Cortese LM, Honig J, Miller C, Bonos SA (2010) Genetic diversity of twelve swiss grass populations using molecular and morphological markers. Bioenerg Res 3: 262-271
11. Courtney EJ, John KM, Mauleon R, Stephens J, Kenneth LM, Daniel RB, Hei L, Jan EL (2011) Genetic variation in biomass traits among 20 diverse rice varieties. Plant Physiol 155: 157-168
12. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15
13. Ezuka A, Kaku H (2000) A historical review of bacterial blight of rice. NIAR Bulletin, Japan, pp 207
14. Girma G (2007) Relationship between wild rice species of Ethiopia with cultivated rice based on ISSR marker. MSc Thesis presented to the school of graduate studies of the Addis Ababa University
15. Gomez KA (1972) Techniques for field experiments with rice. International Rice Research Institute Los Banos, Laguna, pp 34-39
16. Hossain MA, Sarkar MAR, Paul SK (2011) Growth analysis of late transplant Aman rice (cv. BR23) raised from tiller seedlings. LARCJI 2: 265-273
17. Huang M, Zou Y, Jiang P, Xia B, Xiao A (2012) Performance of super hybrid rice cultivars grown under no-tillage and direct seeding. Sci Agric 69: 103-107
18. International Crop Information System (ICIS). (2010). Available at http://www.iris.irri.org/ (accessed 29 July 2011)
19. International rice gene bank collection information system (IRGCIS). (2012). Available at http://www.irgcis.irri.org:81/grc/irgcishome.html (accessed 29 July 2011)
20. Johnson HW, Robinson H, Comstock R (1955) Estimates of genetic and environmental variability in soybeans. Agron J 47: 314-318
21. Joshi SP, Gupta VS, Aggarwal RK, Ranjekar PK, Brar DS (2000) Genetic diversity and phylogenetic relationship as revealed by inter-simple sequence repeats (ISSR) polymorphism in the genus Oryza. Theor Appl Genet 100: 1311-1320
22. Khan A, Rahim M, Ahmad F, Ali A (2004) Performance of chickpea genotypes under Swat valley conditions. J Res (Sci) Bah Zakariya Univ Multan 15: 91-95
23. Khush GS (2001) Green revolution: the way forward. Nature Rev Genet 2: 815-822
24. Khush GS (2005) What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol Biol 59: 1-6
25. Kole PC, Chakraborty NR, Bhat JS (2008) Analysis of variability, correlation and path coefficients in induced mutants of aromatic non-basmati rice. Trop Agric Res Ext 11: 60-64
26. Korbie DJ, Mattick JS (2008) Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nat Protoc 3: 1452-1456
27. Kubota F, Islam MT, Hamid A (1995) Manual of Experimental Plant Physiology - Biomass Measurement and Growth Analysis IPSA-JICA Project Publication No. 18. Institute of Postgraduate Studies in Agriculture (IPSA), Salna, Gazipur
28. Kumar P, Shukla RS (2002) Genetic analysis for yield and its attributed traits in bread wheat under various situations. JNKVV Res J 36: 95-97
29. Lapitan VC, Brar DS, Abe T, Redona ED (2007) Assessment of genetic diversity of Philippine rice cultivars carrying good quality traits using markers. Breeding Sci 57: 263-270
30. Latif MA, Ali MY, Islam MR, Badshah MA, Hasan MS (2009) Evaluation of management principles and performance of the System of Rice Intensification (SRI) in Bangladesh. Field Crop Res 114: 255-262
31. Latif MA, Badsha MA, Tajul MI, Kabir MS, Rafii MY, Mia MAT (2011a) Identification of genotypes resistant to blast, bacterial leaf blight, sheath blight and tungro and efficacy of seed treating fungicides against blast disease of rice. SRE 6: 2804-2811
32. Latif MA, Rahman MM, Kabir MS, Ali MA, Islam MT, Rafii MY (2011b) Genetic diversity analyzed by quantitative traits among rice (Oryza sativa L.) genotypes resistant to blast disease. Afr J Microbiol Res 5: 4383-4391
33. Latif MA, Yusop MR, Rahman MM, Talukdar MRB (2011c) Microsatellite and minisatellite markers based DNA fingerprinting and genetic diversity of blast and ufra resistant genotypes. CR Biol 334: 361-368
34. MARDI (Malaysian Agricultural Research and Development Institute). (2008) Three decades of achievements in research and development. Available at http://www.mardi.gov.my (accessed 24 June 2012)
35. Mathure S, Jawali N, Nadaf A (2010) Diversity analysis in selected non-basmati scented rice collection. Rice Sci 17: 35-42
36. Mengistu MA (2011) Inter Simple Sequence Repeats (ISSRs) fingerprinting, phenotypic variability and trait associations in released and elite rice (Oryza sativa L.) genotypes of Ethiopia. MSc Thesis presented to the School of Graduate Studies of the Addis Ababa University
37. Morrison MJ, Mcvetty PBE, Scarth R (1990) Effect of altering plant density on growth characteristics of summer rape. Can J Plant Sci 70: 139-149
38. Nino-Liu DO, Ronald PC, Bogdanove AJ (2006) Xanthomonas oryzae pathovars: model pathogens of a model crop. Mol Plant Pathol 7: 303-324
39. Peakall R, Smouse PE (2005) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295
40. Radford RJ (1967) Growth analysis formulae - their use and abuse. Crop Sci 7: 171-175
41. Rahman MR, Sayed MA, Ahmad H, Rashid MM (2012) Genetic variability, correlation and path analysis of some physiological traits of transplanted Aman rice (Oryza sativa L.). MEJSR 11: 564-566
42. Raju CS, Rao MVB, Sudarshanam A (2003) Associations in physiological growth parameters of rice hybrids. Madras Agric J 90: 621-624
43. Schulman AH (2007) Molecular markers to assess genetic diversity. Euphytica 158: 313-321
44. Seetharam K, Thirumeni S, Paramasivam K (2010) Estimation of genetic diversity in rice (Oryza sativa L.) genotypes using SSR markers and morphological characters. AJB 8: 2050-2059
45. Shahidullah SM, Hanafi MM, Ashrafuzzaman M, Ismail MR, Salam MA, Khair A (2010) Biomass accumulation and energy conversion efficiency in aromatic rice genotypes. CR Biol 333: 61-67
46. Singh BD (2000) Plant breeding-principles and methods. Kalyani Publishers, Rajindernagar, Ludhiana
47. Singh S, Gautam RK, Singh RK, Deshmukh R, Ojha A (2010) Molecular diversity in rice genotypes differing in physiological mechanisms of salt tolerance through SSR and ISSR markers. IJABPT 1: 550-560
48. Singh VK, Upadhyay P, Sinha P, Mall AK, Jaiswal SK, Singh A, Ellur RK, Biradar S, Sundaram RM, Singh S, Ahmed I, Mishra B, Singh AK, Kole C (2011) Determination of genetic relationships among elite thermo sensitive genic male sterile lines (TGMS) of rice (Oryza sativa L.) employing morphological and simple sequence repeat (SSR) markers. J Genet 90: 11-19
49. Takai T, Matsuura S, Nishio T, Ohsumi A, Shiraiwa T, Horie T (2006) Rice yield potential is closely related to crop growth rate during late reproductive period. Field Crop Res 96: 328-335
50. Tanaka A, Kawano K, Yamaguchi J (1996) Photosynthesis, respiration and plant type of the tropical rice plant. International Rice Research Institute, Los Banos, Laguna
51. Tu M, Lu BR, Zhu Y, Wang Y (2007) Abundant within-varietal genetic diversity in rice germplasm from Yunnan Province of China revealed by SSR fingerprints. Biochem Genet 45: 789-801
52. Upadhyay P, Singh VK, Neeraja CN (2011) Identification of genotype specific alleles and molecular diversity assessment of popular rice (Oryza sativa L.) varieties of India. Int J Plant Breeding Genet 5: 130-140
53. Vivekananda P, Subramanian S (1993) Genetic divergence in rainfed rice. Oryza 30: 60-62
54. Watanabe KN (2011) Genetic diversity of Myanmar rice and their implementation on management methods. AJB 10: 1290-1298
55. Wu G, Wilson LT, McClung AM (1998) Contribution of rice tillers to dry matter accumulation and yield. Agron J 90: 317-323
56. Wu C, Cheng Z, Huang X, Yin S, Cao K, Sun C (2004) Genetic diversity among and within populations of Oryza granulata from Yunnan of China revealed by RAPD and ISSR markers: implications for conservation of the endangered species. Plant Sci 167: 35-42
57. Xiao M, Li Q, Wang L, Guo L, Li J, Tang L, Chen F (2006) ISSR analysis of the genetic diversity of the endangered species Sinopodophyllym hexandrum (Royle) Ying from western Sichuan Province, China. J Integr Plant Biol 48: 1140-1146
58. Ying J, Peng S, He Q, Yang H, Yang C, Visperas RM, Cassman KG (1998) Comparison of high-yield rice in a tropical and subtropical environment. I. Determinants of grain and dry matter yields. Field Crop Res 57: 71-84
59. Yoshida S (1981) Fundamentals of rice crop science. International Rice Research Institute, Los Banos, Laguna
60. Zai-quan C, Fu-you Y, Ding-qing L, Teng-qiong Y, Jian F, Hui-jun Y, Qiao-fang Z, Dun-yu Z, Wei-jiao L, Xing-qi H (2012) Genetic diversity of wild rice species in Yunnan province of China. Rice Sci 19: 21-28
61. Zelitch I (1982) The close relationship between net photosynthesis and crop yield. Biosci 32: 796-802
62. Zhao M, Lafitte R, Sacks E, Dimayuga G, Zhao X (2004) Variation in Leaf Photosynthesis among Wild Species in Genus Oryza and among the Progeny of Selected Crosses of the Wild species with a Rice Cultivar. Proceedings of the 4th International Crop Science Congress, 26 Sep-1 Oct 2004, Brisbane, Australia