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Volumn 531, Issue 2, 2013, Pages 263-269

Transcriptomic analysis of incised leaf-shape determination in birch

Author keywords

Auxin; Betula pendula; Incised leaf; Transcriptome

Indexed keywords

AUXIN; TRANSCRIPTOME; VEGETABLE PROTEIN;

EID: 84885419870     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.08.091     Document Type: Article
Times cited : (16)

References (29)
  • 1
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S., Claverie J.M. The significance of digital gene expression profiles. Genome Res. 1997, 7:986-995.
    • (1997) Genome Res. , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 2
    • 0035829361 scopus 로고    scopus 로고
    • Controlling the false discovery rate in behavior genetics research
    • Benjamini Y., Drai D., Elmer G., Kafkafi N., Golani I. Controlling the false discovery rate in behavior genetics research. Behav. Brain Res. 2001, 125:279-284.
    • (2001) Behav. Brain Res. , vol.125 , pp. 279-284
    • Benjamini, Y.1    Drai, D.2    Elmer, G.3    Kafkafi, N.4    Golani, I.5
  • 3
    • 79952751751 scopus 로고    scopus 로고
    • Model for the regulation of Arabidopsis thaliana leaf margin development
    • Bilsborough G.D., et al. Model for the regulation of Arabidopsis thaliana leaf margin development. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:3424-3429.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 3424-3429
    • Bilsborough, G.D.1
  • 4
    • 0001479473 scopus 로고    scopus 로고
    • Habitat-related error in estimating temperatures from leaf margins in a humid tropical forest
    • Burnham R.J., Pitman N.C.A., Johnson K.R., Wilf P. Habitat-related error in estimating temperatures from leaf margins in a humid tropical forest. Am. J. Bot. 2001, 88:1096-1102.
    • (2001) Am. J. Bot. , vol.88 , pp. 1096-1102
    • Burnham, R.J.1    Pitman, N.C.A.2    Johnson, K.R.3    Wilf, P.4
  • 5
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 6
    • 2642542593 scopus 로고    scopus 로고
    • Auxin signaling and regulated protein degradation
    • Dharmasiri N., Estelle M. Auxin signaling and regulated protein degradation. Trends Plant Sci. 2004, 9:302-308.
    • (2004) Trends Plant Sci. , vol.9 , pp. 302-308
    • Dharmasiri, N.1    Estelle, M.2
  • 7
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr M.G., et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 2011, 29:644-652.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 8
    • 79952303145 scopus 로고    scopus 로고
    • Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf development
    • Hasson A., et al. Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf development. Plant Cell 2011, 23:54-68.
    • (2011) Plant Cell , vol.23 , pp. 54-68
    • Hasson, A.1
  • 9
    • 33751034533 scopus 로고    scopus 로고
    • Asymmetric leaves1 and auxin activities converge to repress brevipedicellus expression and promote leaf development in Arabidopsis
    • Hay A., Barkoulas M., Tsiantis M. Asymmetric leaves1 and auxin activities converge to repress brevipedicellus expression and promote leaf development in Arabidopsis. Development 2006, 133:3955-3961.
    • (2006) Development , vol.133 , pp. 3955-3961
    • Hay, A.1    Barkoulas, M.2    Tsiantis, M.3
  • 10
    • 0033083940 scopus 로고    scopus 로고
    • Axioms and axes in leaf formation
    • Hudson A. Axioms and axes in leaf formation. Curr. Opin. Plant Biol. 1999, 2:56-60.
    • (1999) Curr. Opin. Plant Biol. , vol.2 , pp. 56-60
    • Hudson, A.1
  • 11
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli C., Jongeneel C.V., Bucher P. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 1999, 99:138-148.
    • (1999) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.99 , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 12
    • 19544386804 scopus 로고    scopus 로고
    • The Arabidopsis F-box protein TIR1 is an auxin receptor
    • Kepinski S., Leyser O. The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 2005, 435:446-451.
    • (2005) Nature , vol.435 , pp. 446-451
    • Kepinski, S.1    Leyser, O.2
  • 13
    • 78650854673 scopus 로고    scopus 로고
    • TCP transcription factors regulate the activities of asymmetric leaves1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis
    • Koyama T., Mitsuda N., Seki M., Shinozaki K., Ohme-Takagib M. TCP transcription factors regulate the activities of asymmetric leaves1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell 2010, 22:3574-3588.
    • (2010) Plant Cell , vol.22 , pp. 3574-3588
    • Koyama, T.1    Mitsuda, N.2    Seki, M.3    Shinozaki, K.4    Ohme-Takagib, M.5
  • 14
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li R., et al. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009, 25:1666-1667.
    • (2009) Bioinformatics , vol.25 , pp. 1666-1667
    • Li, R.1
  • 15
    • 0035999460 scopus 로고    scopus 로고
    • Genetics of Aux/IAA and ARF action in plant growth and development
    • Liscum E., Reed J.W. Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol. Biol. 2002, 49:387-400.
    • (2002) Plant Mol. Biol. , vol.49 , pp. 387-400
    • Liscum, E.1    Reed, J.W.2
  • 17
    • 84867783535 scopus 로고    scopus 로고
    • Transcriptomic analysis of phenotypic changes in birch (Betula platyphylla) autotetraploids
    • Mu H., Liu Z., Lin L., Li H., Jiang J., Liu G. Transcriptomic analysis of phenotypic changes in birch (Betula platyphylla) autotetraploids. Int. J. Mol. Sci. 2012, 13:13012-13029.
    • (2012) Int. J. Mol. Sci. , vol.13 , pp. 13012-13029
    • Mu, H.1    Liu, Z.2    Lin, L.3    Li, H.4    Jiang, J.5    Liu, G.6
  • 18
    • 33845791014 scopus 로고    scopus 로고
    • The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis
    • Nikovics K., et al. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 2006, 18:2929-2945.
    • (2006) Plant Cell , vol.18 , pp. 2929-2945
    • Nikovics, K.1
  • 19
    • 34249795776 scopus 로고    scopus 로고
    • Regulation of lanceolate by miR319 is required for compound-leaf development in tomato
    • Ori N., et al. Regulation of lanceolate by miR319 is required for compound-leaf development in tomato. Nat. Genet. 2007, 39:787-791.
    • (2007) Nat. Genet. , vol.39 , pp. 787-791
    • Ori, N.1
  • 20
    • 0037460985 scopus 로고    scopus 로고
    • TIGR gene indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
    • Pertea G., et al. TIGR gene indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 2003, 19:651-652.
    • (2003) Bioinformatics , vol.19 , pp. 651-652
    • Pertea, G.1
  • 21
    • 71049192731 scopus 로고    scopus 로고
    • Distal expression of knotted1 in maize leaves leads to reestablishment of proximal/distal patterning and leaf dissection
    • Ramirez J., Bolduc N., Lisch D., Hake S. Distal expression of knotted1 in maize leaves leads to reestablishment of proximal/distal patterning and leaf dissection. Plant Physiol. 2009, 151:1878-1888.
    • (2009) Plant Physiol. , vol.151 , pp. 1878-1888
    • Ramirez, J.1    Bolduc, N.2    Lisch, D.3    Hake, S.4
  • 23
    • 0002690563 scopus 로고
    • In vitro shoot regeneration from leaf discs of Betula pendula 'Dalecarlica' EM 85
    • Valobra C.P., James D.J. In vitro shoot regeneration from leaf discs of Betula pendula 'Dalecarlica' EM 85. Plant Cell Tissue Organ 1990, 21:51-54.
    • (1990) Plant Cell Tissue Organ , vol.21 , pp. 51-54
    • Valobra, C.P.1    James, D.J.2
  • 24
    • 84885427198 scopus 로고    scopus 로고
    • Advances in understanding the roles of auxin involved in modulating plant architecture
    • Wang B., Li J., Wang Y. Advances in understanding the roles of auxin involved in modulating plant architecture. Chin. Bull. Bot. 2006, 23:443-458.
    • (2006) Chin. Bull. Bot. , vol.23 , pp. 443-458
    • Wang, B.1    Li, J.2    Wang, Y.3
  • 25
    • 84866734563 scopus 로고    scopus 로고
    • Building an mRNA transcriptome from the shoots of Betula platyphylla by using Solexa technology
    • Wang Y., Gao C., Zheng L., Liu G., Jiang J., Yang C. Building an mRNA transcriptome from the shoots of Betula platyphylla by using Solexa technology. Tree Genet. Genomes 2012, 8:1031-1040.
    • (2012) Tree Genet. Genomes , vol.8 , pp. 1031-1040
    • Wang, Y.1    Gao, C.2    Zheng, L.3    Liu, G.4    Jiang, J.5    Yang, C.6
  • 26
    • 0000330119 scopus 로고
    • Paleoclimatic estimates from Tertiary leaf assemblages
    • Wolfe J.A. Paleoclimatic estimates from Tertiary leaf assemblages. Annu. Rev. Earth Planet. Sci. 1995, 23:119-142.
    • (1995) Annu. Rev. Earth Planet. Sci. , vol.23 , pp. 119-142
    • Wolfe, J.A.1
  • 27
    • 0002910102 scopus 로고
    • Enzyme linked immunosorbent assay for endogenous plant hormones
    • Wu S., Chen W., Zhou X. Enzyme linked immunosorbent assay for endogenous plant hormones. Plant Physiol. Comm. 1988, 24:53-57.
    • (1988) Plant Physiol. Comm. , vol.24 , pp. 53-57
    • Wu, S.1    Chen, W.2    Zhou, X.3
  • 28
    • 84885431252 scopus 로고    scopus 로고
    • Extraction of total RNA from mature leaves rich in polysaccharides and secondary metabolites of Betula platyphylla Suk
    • Zeng F., Nan N., Zhan Y. Extraction of total RNA from mature leaves rich in polysaccharides and secondary metabolites of Betula platyphylla Suk. Plant Physiol. Comm. 2007, 43:913-916.
    • (2007) Plant Physiol. Comm. , vol.43 , pp. 913-916
    • Zeng, F.1    Nan, N.2    Zhan, Y.3
  • 29
    • 79960880980 scopus 로고    scopus 로고
    • Developmental analysis of a Medicago truncatula smooth leaf margin1 mutant reveals context-dependent effects on compound leaf development
    • Zhou C., et al. Developmental analysis of a Medicago truncatula smooth leaf margin1 mutant reveals context-dependent effects on compound leaf development. Plant Cell 2011, 23:2106-2124.
    • (2011) Plant Cell , vol.23 , pp. 2106-2124
    • Zhou, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.