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Volumn 13, Issue 20, 2013, Pages 2967-2975

Improving peptide relative quantification in MALDI-TOF MS for biomarker assessment

Author keywords

Biomarker; MALDI TOF MS; Proteomic profiling; Relative quantification; Technology; Urine

Indexed keywords

BIOLOGICAL MARKER;

EID: 84885417510     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201300100     Document Type: Article
Times cited : (21)

References (32)
  • 1
    • 84875881008 scopus 로고    scopus 로고
    • MALDI mass spectrometry for nucleic acid analysis
    • Gao, X., Tan, B. H., Sugrue, R., Tang, K., MALDI mass spectrometry for nucleic acid analysis. Top. Curr. Chem. 2013, 331, 55-77.
    • (2013) Top. Curr. Chem. , vol.331 , pp. 55-77
    • Gao, X.1    Tan, B.H.2    Sugrue, R.3    Tang, K.4
  • 2
    • 84875885584 scopus 로고    scopus 로고
    • Chemical and biochemical applications of MALDI TOF-MS based on analyzing the small organic compounds
    • Wang, H., Zhao, Z., Guo, Y., Chemical and biochemical applications of MALDI TOF-MS based on analyzing the small organic compounds. Top. Curr. Chem. 2013, 331, 165-192.
    • (2013) Top. Curr. Chem. , vol.331 , pp. 165-192
    • Wang, H.1    Zhao, Z.2    Guo, Y.3
  • 3
    • 84866322477 scopus 로고    scopus 로고
    • Analysis of phospolipids and glycolipids by thin-layer chromatography-matrix-assisted laser desorption and ionization mass spectrometry
    • Fuchs, B., Analysis of phospolipids and glycolipids by thin-layer chromatography-matrix-assisted laser desorption and ionization mass spectrometry. J. Chromatogr. A 2012, 1259, 62-73.
    • (2012) J. Chromatogr. A , vol.1259 , pp. 62-73
    • Fuchs, B.1
  • 4
    • 62149085888 scopus 로고    scopus 로고
    • Low molecular weight proteins in urines from healthy subjects as well as diabetic, nephropathic and diabetic-nephropathic patients: a MALDI study
    • Lapolla, A., Seraglia, R., Molin, L., Williams, K. etal., Low molecular weight proteins in urines from healthy subjects as well as diabetic, nephropathic and diabetic-nephropathic patients: a MALDI study. J. Mass Spectrom. 2009, 44, 419-425.
    • (2009) J. Mass Spectrom. , vol.44 , pp. 419-425
    • Lapolla, A.1    Seraglia, R.2    Molin, L.3    Williams, K.4
  • 5
    • 84875876862 scopus 로고    scopus 로고
    • Advances of MALDI-TOF MS in the analysis of traditional Chinese medicines
    • Lu, M., Cai, Z., Advances of MALDI-TOF MS in the analysis of traditional Chinese medicines. Top. Curr. Chem. 2013, 331, 143-164.
    • (2013) Top. Curr. Chem. , vol.331 , pp. 143-164
    • Lu, M.1    Cai, Z.2
  • 6
    • 84876217399 scopus 로고    scopus 로고
    • MALDI TOF MS profiling of bacteria at the strain level: a review
    • Sandrin, T. R., Goldstein, J. E., Schumaker, S., MALDI TOF MS profiling of bacteria at the strain level: a review. Mass Spectrom. Rev. 2012, 32, 188-217.
    • (2012) Mass Spectrom. Rev. , vol.32 , pp. 188-217
    • Sandrin, T.R.1    Goldstein, J.E.2    Schumaker, S.3
  • 7
    • 84859085572 scopus 로고    scopus 로고
    • Use of mass spectrometry for imaging metabolites in plants
    • Lee, Y. J., Perdian, D. C., Song, Z., Yeung, E. S., Nikolau, B. J., Use of mass spectrometry for imaging metabolites in plants. Plant J. 2012, 70, 81-95.
    • (2012) Plant J. , vol.70 , pp. 81-95
    • Lee, Y.J.1    Perdian, D.C.2    Song, Z.3    Yeung, E.S.4    Nikolau, B.J.5
  • 8
    • 80053647484 scopus 로고    scopus 로고
    • Assessment of high-throughput high-resolution MALDI-TOF-MS of urinary peptides for the detection of muscle-invasive bladder cancer
    • Bryan, R. T., Wei, W., Shimwell, N. J., Collins, S. I. etal., Assessment of high-throughput high-resolution MALDI-TOF-MS of urinary peptides for the detection of muscle-invasive bladder cancer. Proteomics Clin. Appl. 2011, 5, 493-503.
    • (2011) Proteomics Clin. Appl. , vol.5 , pp. 493-503
    • Bryan, R.T.1    Wei, W.2    Shimwell, N.J.3    Collins, S.I.4
  • 9
    • 79952480645 scopus 로고    scopus 로고
    • Proteomic profiling of mucosal and submucosal colonic tissues yields protein signatures that differentiate the inflammatory colitides
    • M'Koma, A. E., Seeley, E. H., Washington, M. K., Schwartz, D. A. etal., Proteomic profiling of mucosal and submucosal colonic tissues yields protein signatures that differentiate the inflammatory colitides. Inflamm. Bowel Dis. 2011, 17, 875-883.
    • (2011) Inflamm. Bowel Dis. , vol.17 , pp. 875-883
    • M'Koma, A.E.1    Seeley, E.H.2    Washington, M.K.3    Schwartz, D.A.4
  • 10
    • 79955462941 scopus 로고    scopus 로고
    • The first decade of MALDI protein profiling: a lesson in translational biomarker research
    • Albrethsen, J., The first decade of MALDI protein profiling: a lesson in translational biomarker research. J. Proteomics 2011, 74, 765-773.
    • (2011) J. Proteomics , vol.74 , pp. 765-773
    • Albrethsen, J.1
  • 11
    • 77952314463 scopus 로고    scopus 로고
    • Chapter 6 - microbial fingerprinting using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS): applications and challenges
    • Giebel, R., Worden, C., Rust, S. M., Kleinheinz, G. T. etal., Chapter 6 - microbial fingerprinting using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS): applications and challenges. Adv. Appl. Microbiol. 2010, 71, 149-184.
    • (2010) Adv. Appl. Microbiol. , vol.71 , pp. 149-184
    • Giebel, R.1    Worden, C.2    Rust, S.M.3    Kleinheinz, G.T.4
  • 12
    • 63449101801 scopus 로고    scopus 로고
    • Validation of previously identified serum biomarkers for breast cancer with SELDI-TOF MS: a case control study
    • DOI: 10.1186/1755-8794-2-4.
    • van Winden, A., Gast, M. C., Beijnen, J., Rutgers, E. etal., Validation of previously identified serum biomarkers for breast cancer with SELDI-TOF MS: a case control study. BMC Med. Genomics 2009, 19, 4. DOI: 10.1186/1755-8794-2-4.
    • (2009) BMC Med. Genomics , vol.19 , pp. 4
    • van Winden, A.1    Gast, M.C.2    Beijnen, J.3    Rutgers, E.4
  • 13
    • 33847209996 scopus 로고    scopus 로고
    • Validation of SELDI-TOF MS serum protein profiles for renal cell carcinoma in new populations
    • Engwegen, J. Y. M. N., Mehra, N., Haanen, J. B. A. G., Bonfrer, J. M. G. etal., Validation of SELDI-TOF MS serum protein profiles for renal cell carcinoma in new populations. Lab. Invest. 2007, 87, 161-172.
    • (2007) Lab. Invest. , vol.87 , pp. 161-172
    • Engwegen, J.Y.M.N.1    Mehra, N.2    Haanen, J.B.A.G.3    Bonfrer, J.M.G.4
  • 14
    • 58149287747 scopus 로고    scopus 로고
    • Investigating the quantitative nature of MALDI-TOF MS
    • Szajli, E., Feher, T., Medzihradszky, K. F., Investigating the quantitative nature of MALDI-TOF MS. Mol. Cell. Proteomics 2008, 7, 2410-2418.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 2410-2418
    • Szajli, E.1    Feher, T.2    Medzihradszky, K.F.3
  • 15
    • 84868250682 scopus 로고    scopus 로고
    • Graphite supported preparation (GSP) of alpha-cyano-4-hydroxycinnamic acid (CHCA) for matrix-assisted laser desorption/ionisation mass spectrometry (MALDI-MS) for peptides and proteins
    • Gorka, J., Bahr, U., Karas, M., Graphite supported preparation (GSP) of alpha-cyano-4-hydroxycinnamic acid (CHCA) for matrix-assisted laser desorption/ionisation mass spectrometry (MALDI-MS) for peptides and proteins. J. Am. Soc. Mass Spectrom. 2012, 23, 1949-1954.
    • (2012) J. Am. Soc. Mass Spectrom. , vol.23 , pp. 1949-1954
    • Gorka, J.1    Bahr, U.2    Karas, M.3
  • 16
    • 50449099939 scopus 로고    scopus 로고
    • 4-Chloro-apha-cyanocinnamic acid is an advanced, rationally designed MALDI matrix
    • Jaskolla, T. W., Lehmann, W. D., Karas, M., 4-Chloro-apha-cyanocinnamic acid is an advanced, rationally designed MALDI matrix. Proc. Natl. Acad. Sci. USA 2008, 105, 12200-12205.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 12200-12205
    • Jaskolla, T.W.1    Lehmann, W.D.2    Karas, M.3
  • 17
    • 33845645547 scopus 로고    scopus 로고
    • Recent developments in methods and technology for analysis of biological samples by MALDI-TOF-MS
    • Pan, C., Xu, B., Zhou, M., Fu, Y. etal., Recent developments in methods and technology for analysis of biological samples by MALDI-TOF-MS. Anal. Bioanal. Chem. 2007, 387, 193-204.
    • (2007) Anal. Bioanal. Chem. , vol.387 , pp. 193-204
    • Pan, C.1    Xu, B.2    Zhou, M.3    Fu, Y.4
  • 18
    • 62149095745 scopus 로고    scopus 로고
    • Modern MALDI time-of-flight mass spectrometry
    • Vestal, M. L., Modern MALDI time-of-flight mass spectrometry. J. Mass Spectrom. 2009, 44, 303-317.
    • (2009) J. Mass Spectrom. , vol.44 , pp. 303-317
    • Vestal, M.L.1
  • 20
    • 77953722868 scopus 로고    scopus 로고
    • Comprehensive human urine standards for comparability and standardization in clinical proteome analysis
    • Mischak, H., Kolch, W., Aivaliotis, M., Bouyssie, D. etal., Comprehensive human urine standards for comparability and standardization in clinical proteome analysis. Proteomics Clin. Appl. 2010, 4, 464-478.
    • (2010) Proteomics Clin. Appl. , vol.4 , pp. 464-478
    • Mischak, H.1    Kolch, W.2    Aivaliotis, M.3    Bouyssie, D.4
  • 21
    • 0033574249 scopus 로고    scopus 로고
    • A more accurate method to estimate glomerular filtration rate from serum creatinine: a new prediction equation. Modification of diet in renal disease study group
    • Levey, A. S., Bosch, J. P., Lewis, J. B., Greene, T. etal., A more accurate method to estimate glomerular filtration rate from serum creatinine: a new prediction equation. Modification of diet in renal disease study group. Ann. Intern. Med. 1999, 160, 461-470.
    • (1999) Ann. Intern. Med. , vol.160 , pp. 461-470
    • Levey, A.S.1    Bosch, J.P.2    Lewis, J.B.3    Greene, T.4
  • 22
    • 23144461504 scopus 로고    scopus 로고
    • Pilot study of capillary electrophoresis coupled to mass spectrometry as a tool to define potential prostate cancer biomarkers in urine
    • Theodorescu, D., Fliser, D., Wittke, S., Mischak, H. etal., Pilot study of capillary electrophoresis coupled to mass spectrometry as a tool to define potential prostate cancer biomarkers in urine. Electrophoresis 2005, 26, 2797-2808.
    • (2005) Electrophoresis , vol.26 , pp. 2797-2808
    • Theodorescu, D.1    Fliser, D.2    Wittke, S.3    Mischak, H.4
  • 23
    • 84866492752 scopus 로고    scopus 로고
    • A comparison between MALDI-MS and CE-MS data for biomarker assessment in chronic kidney diseases
    • Molin, L., Seraglia, R., Lapolla, A., Ragazzi, E. etal., A comparison between MALDI-MS and CE-MS data for biomarker assessment in chronic kidney diseases. J. Proteomics 2012, 75, 5888-5897.
    • (2012) J. Proteomics , vol.75 , pp. 5888-5897
    • Molin, L.1    Seraglia, R.2    Lapolla, A.3    Ragazzi, E.4
  • 24
    • 79957592170 scopus 로고    scopus 로고
    • Human urinary peptide database for multiple disease biomarker discovery
    • Siwy, J., Mullen, W., Golovko, I., Franke, J., Zurbig, P., Human urinary peptide database for multiple disease biomarker discovery. Proteomics Clin. Appl. 2011, 5, 367-374.
    • (2011) Proteomics Clin. Appl. , vol.5 , pp. 367-374
    • Siwy, J.1    Mullen, W.2    Golovko, I.3    Franke, J.4    Zurbig, P.5
  • 25
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y., Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B 1995, 57, 289-300.
    • (1995) J. R. Stat. Soc. Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 26
    • 78149479774 scopus 로고    scopus 로고
    • Multicentric validation of proteomic biomarkers in urine specific for diabetic nephropathy
    • Alkhalaf, A., Zurbig, P., Bakker, S. J. L., Bilo, H. J. G. etal., Multicentric validation of proteomic biomarkers in urine specific for diabetic nephropathy. PLoS ONE 2010, 5, e13421.
    • (2010) PLoS ONE , vol.5
    • Alkhalaf, A.1    Zurbig, P.2    Bakker, S.J.L.3    Bilo, H.J.G.4
  • 27
    • 34547192591 scopus 로고    scopus 로고
    • An improved method of sample preparation on AnchorChip targets for MALDI-MS and MS/MS and its application in the liver proteome project
    • Zhang, X., Shi, L., Shu, S., Wang, Y. etal., An improved method of sample preparation on AnchorChip targets for MALDI-MS and MS/MS and its application in the liver proteome project. Proteomics 2007, 7, 2340-2349.
    • (2007) Proteomics , vol.7 , pp. 2340-2349
    • Zhang, X.1    Shi, L.2    Shu, S.3    Wang, Y.4
  • 28
    • 34248334942 scopus 로고    scopus 로고
    • Reproducibility in protein profiling by MALDI-TOF mass spectrometry
    • Albrethsen, J., Reproducibility in protein profiling by MALDI-TOF mass spectrometry. Clin. J. Am. Soc. Nephrol. 2007, 53, 852-858.
    • (2007) Clin. J. Am. Soc. Nephrol. , vol.53 , pp. 852-858
    • Albrethsen, J.1
  • 29
    • 58149383790 scopus 로고    scopus 로고
    • Quantitative matrix-assisted laser desorption/ionization mass spectrometry
    • Duncan, M. W., Roder, H., Hunsucker, S. W., Quantitative matrix-assisted laser desorption/ionization mass spectrometry. Brief Funct. Genomic Proteomic 2008, 7, 355-370.
    • (2008) Brief Funct. Genomic Proteomic , vol.7 , pp. 355-370
    • Duncan, M.W.1    Roder, H.2    Hunsucker, S.W.3
  • 30
    • 58149383790 scopus 로고    scopus 로고
    • Quantitative matrix-assisted laser desorption/ionization mass spectrometry
    • Duncan, M. W., Roder, H., Hunsucker, S. W., Quantitative matrix-assisted laser desorption/ionization mass spectrometry. Brief Funct. Genomic Proteomic 2008, 7, 355-370.
    • (2008) Brief Funct. Genomic Proteomic , vol.7 , pp. 355-370
    • Duncan, M.W.1    Roder, H.2    Hunsucker, S.W.3
  • 31
    • 78149291420 scopus 로고    scopus 로고
    • Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease
    • Good, D. M., Zurbig, P., Dakna, M., Dominiczak, A. F. etal., Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Mol. Cell. Proteomics 2010, 9, 2424-2437.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 2424-2437
    • Good, D.M.1    Zurbig, P.2    Dakna, M.3    Dominiczak, A.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.