Identification and Characterization of Eleven Novel Human Gamma-Papillomavirus Isolates from Healthy Skin, Found at Low Frequency in a Normal Population

PLoS ONE

Volumn 8, Issue 10, 2013, Pages

  Li, Jingjing ^a   Pan, YaQi ^a   Deng, QiuJu ^a   Cai, Hong ^a   Ke, Yang ^a  

^a PEKING UNIVERSITY CANCER HOSPITAL AND INSTITUTE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHINA; CONTROLLED STUDY; GAMMAPAPILLOMAVIRUS; GENUS; HUMAN; HUMAN CELL; HUMAN PAPILLOMAVIRUS TYPE 161; HUMAN PAPILLOMAVIRUS TYPE 162; HUMAN PAPILLOMAVIRUS TYPE 163; HUMAN PAPILLOMAVIRUS TYPE 164; HUMAN PAPILLOMAVIRUS TYPE 165; HUMAN PAPILLOMAVIRUS TYPE 166; HUMAN PAPILLOMAVIRUS TYPE 168; HUMAN PAPILLOMAVIRUS TYPE 169; HUMAN PAPILLOMAVIRUS TYPE 170; NONHUMAN; NUCLEOTIDE SEQUENCE; PREVALENCE; SKIN; SPECIES; VIRUS ISOLATION; GENETICS; ISOLATION AND PURIFICATION; MIXED INFECTION; MOLECULAR GENETICS; OPEN READING FRAME; PAPILLOMA VIRUS; PAPILLOMAVIRUS INFECTIONS; PHYLOGENY; VIROLOGY; VIRUS GENOME;

BASE SEQUENCE; COINFECTION; GENOME, VIRAL; HUMANS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PAPILLOMAVIRIDAE; PAPILLOMAVIRUS INFECTIONS; PHYLOGENY; PREVALENCE; SKIN;

EID: 84885409983     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0077116     Document Type: Article

References (37)

1. Bernard HU, Burk RD, Chen Z, van Doorslaer K, Hausen H, et al. (2010) Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 401: 70-79. doi:10.1016/j.virol.2010.02.002. PubMed: 20206957.
2. zur Hausen H, (2002) Papillomaviruses and cancer: from basic studies to clinical application. Nat Rev Cancer 2: 342-350. doi:10.1038/nrc798. PubMed: 12044010.
3. de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H, (2004) Classification of papillomaviruses. Virology 324: 17-27. doi:10.1016/j.virol.2004.03.033. PubMed: 15183049.
4. Feltkamp MC, de Koning MN, Bavinck JN, Ter Schegget J, (2008) Betapapillomaviruses: innocent bystanders or causes of skin cancer. J Clin Virol 43: 353-360. doi:10.1016/j.jcv.2008.09.009. PubMed: 18986829.
5. Antonsson A, Erfurt C, Hazard K, Holmgren V, Simon M, et al. (2003) Prevalence and type spectrum of human papillomaviruses in healthy skin samples collected in three continents. J Gen Virol 84: 1881-1886. doi:10.1099/vir.0.18836-0. PubMed: 12810883.
6. Forslund O, (2007) Genetic diversity of cutaneous human papillomaviruses. J Gen Virol 88: 2662-2669. doi:10.1099/vir.0.82911-0. PubMed: 17872517.
7. Crow JM, (2012) HPV: The global burden. Nature 488: S2-S3. doi:10.1038/488S2a. PubMed: 22932437.
8. Antonsson A, Forslund O, Ekberg H, Sterner G, Hansson BG, (2000) The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses. J Virol 74: 11636-11641. doi:10.1128/JVI.74.24.11636-11641.2000. PubMed: 11090162.
9. Chouhy D, Bolatti EM, Piccirilli G, Sanchez A, Fernandez Bussy R, et al. (2012) Identification of HPV-156, the prototype of a new human gammapapillomavirus species, by a generic and highly sensitive PCR strategy for long DNA fragments. J Gen Virol.
10. Kovanda A, Kocjan BJ, Potočnik M, Poljak M, (2011) Characterization of a novel cutaneous human papillomavirus genotype HPV-125. PLOS ONE 6: e22414. doi:10.1371/journal.pone.0022414. PubMed: 21811601.
11. Kovanda A, Kocjan BJ, Luzar B, Bravo IG, Poljak M, (2011) Characterization of novel cutaneous human papillomavirus genotypes HPV-150 and HPV-151. PLOS ONE 6: e22529. doi:10.1371/journal.pone.0022529. PubMed: 21799888.
12. Köhler A, Gottschling M, Manning K, Lehmann MD, Schulz E, et al. (2011) Genomic characterization of ten novel cutaneous human papillomaviruses from keratotic lesions of immunosuppressed patients. J Gen Virol 92: 1585-1594. doi:10.1099/vir.0.030593-0. PubMed: 21471318.
13. de Villiers EM, Gunst K, (2009) Characterization of seven novel human papillomavirus types isolated from cutaneous tissue, but also present in mucosal lesions. J Gen Virol 90: 1999-2004. doi:10.1099/vir.0.011478-0. PubMed: 19386784.
14. Vasiljevic N, Hazard K, Dillner J, Forslund O, (2008) Four novel human betapapillomaviruses of species 2 preferentially found in actinic keratosis. J Gen Virol 89: 2467-2474. doi:10.1099/vir.0.2008/001925-0. PubMed: 18796715.
15. Liu F, Guo F, Zhou Y, He Z, Tian X, et al. (2012) The anyang esophageal cancer cohort study: study design, implementation of fieldwork, and use of computer-aided survey system. PLOS ONE 7: e31602. doi:10.1371/journal.pone.0031602. PubMed: 22328939.
16. Forslund O, Ly H, Reid C, Higgins G, (2003) A broad spectrum of human papillomavirus types is present in the skin of Australian patients with non-melanoma skin cancers and solar keratosis. Br J Dermatol 149: 64-73. doi:10.1046/j.1365-2133.2003.05376.x. PubMed: 12890196.
17. Forslund O, Antonsson A, Nordin P, Stenquist B, Hansson BG, (1999) A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin. J Gen Virol 80(9):: 2437-2443.
18. Li, Jingjing YaQi Pan, Xu Zhongyao, Qiyan Wang Dong Hang, et al. (2013) Improved detection of human papillomavirus harbored in healthy skin with FAP6085/64 primers Journal of Virological Methods.
19. Rector A, Tachezy R, Van Ranst M, (2004) A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol 78: 4993-4998. doi:10.1128/JVI.78.10.4993-4998.2004. PubMed: 15113879.
20. Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386. PubMed: 10547847.
21. Zheng ZM, Baker CC, (2006) Papillomavirus genome structure, expression, and post-transcriptional regulation. Front Biosci J Virtual Libr 11: 2286-2302. doi:10.2741/1971. PubMed: 16720315.
22. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi:10.1093/molbev/msr121. PubMed: 21546353.
23. Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818. doi:10.1093/bioinformatics/14.9.817. PubMed: 9918953.
24. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. doi:10.1093/bioinformatics/btg180. PubMed: 12912839.
25. Page RD, (2002) Visualizing phylogenetic trees using TreeView. Curr Protoc Bioinforma Chapter 6Unit 6.2: Unit 6 2. PubMed: 18792942.
26. KYTT Bao Y (2008) Virus Classification by Pairwise Sequence Comparison (PASC). Encyclopedia of Virology, 5 vols (Mahy BWJ, Van Regenmortel MHV, eds. Oxford: Elsevier. pp. pp. 342-348.
27. Fredricks DN, (2001) Microbial ecology of human skin in health and disease. J Investig Dermatol Symp Proc 6: 167-169. doi:10.1046/j.0022-202x.2001.00039.x. PubMed: 11924822.
28. Grice EA, Kong HH, Renaud G, Young AC, Program NCS et al. (2008) A diversity profile of the human skin microbiota. Genome Res 18: 1043-1050. doi:10.1101/gr.075549.107. PubMed: 18502944.
29. Ekström J, Bzhalava D, Svenback D, Forslund O, Dillner J, (2011) High throughput sequencing reveals diversity of Human Papillomaviruses in cutaneous lesions. Int J Cancer 129: 2643-2650. doi:10.1002/ijc.26204. PubMed: 21630257.
30. Claudy AL, Touraine JL, Mitanne D, (1982) Epidermodysplasia verruciformis induced by a new human papillomavirus (HPV-8). Report of a case without immune dysfunction. Effect of treatment with an aromatic retinoid. Arch Dermatol Res 274: 213-219. doi:10.1007/BF00403724. PubMed: 6299205.
31. Deau MC, Favre M, Orth G, (1991) Genetic heterogeneity among human papillomaviruses (HPV) associated with epidermodysplasia verruciformis: evidence for multiple allelic forms of HPV5 and HPV8 E6 genes. Virology 184: 492-503. doi:10.1016/0042-6822(91)90419-C. PubMed: 1653484.
32. Dell'Oste V, Azzimonti B, De Andrea M, Mondini M, Zavattaro E, et al. (2009) High beta-HPV DNA loads and strong seroreactivity are present in epidermodysplasia verruciformis. J Invest Dermatol 129: 1026-1034. doi:10.1038/jid.2008.317. PubMed: 18923444.
33. Antonsson A, Karanfilovska S, Lindqvist PG, Hansson BG, (2003) General acquisition of human papillomavirus infections of skin occurs in early infancy. J Clin Microbiol 41: 2509-2514. doi:10.1128/JCM.41.6.2509-2514.2003. PubMed: 12791874.
34. Bernard HU, (1994) Coevolution of papillomaviruses with human populations. Trends Microbiol 2: 140-143. doi:10.1016/0966-842X(94)90602-5. PubMed: 8012758.
35. Gottschling M, Stamatakis A, Nindl I, Stockfleth E, Alonso A, et al. (2007) Multiple evolutionary mechanisms drive papillomavirus diversification. Mol Biol Evol 24: 1242-1258. doi:10.1093/molbev/msm039. PubMed: 17344207.
36. Bravo IG, Alonso A, (2007) Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins. Virus Genes 34: 249-262. doi:10.1007/s11262-006-0017-4. PubMed: 16927128.
37. Gottschling M, Köhler A, Stockfleth E, Nindl I, (2007) Phylogenetic analysis of beta-papillomaviruses as inferred from nucleotide and amino acid sequence data. Mol Phylogenet Evol 42: 213-222. doi:10.1016/j.ympev.2006.07.011. PubMed: 16935527.