Cycling single-carbon compounds: From omics to novel Concepts: Formerly obscure microbial species emerge as major players in environmental cycling of carbon and nitrogen

Microbe

Volumn 8, Issue 10, 2013, Pages 395-400

  Chistoserdova, Ludmila ^a   Kalyuzhnaya, Marina G ^a   Lidstrom, Mary E ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84885232222     PISSN: 15587452     EISSN: 15587460     Source Type: Journal    
DOI: 10.1128/microbe.8.395.1     Document Type: Article

References (10)

1. Beck, D. A. C., M. G. Kalyuzhnaya, S. Malfatti, S. Tringe, T. Glavina del Rio, N. Ivanova, M. E. Lidstrom, and L. Chistoserdova. 2013. A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae. PeerJ 1:e23.
2. Beck, D. A., E. L. Hendrickson, A. Vorobev, T. Wang, S. Lim, M. G. Kalyuzhnaya, M. E. Lidstrom, M. Hackett, and L. Chistoserdova. 2011. An integrated proteomics/ transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis. J. Bacteriol. 193:4758-4765.
3. Chistoserdova, L. 2011. Methylotrophy in a lake: from metagenomics to single organism physiology. Appl. Environ. Microbiol. 77:4705-4711.
4. Chistoserdova, L., and M. E. Lidstrom. 2013. Aerobic methylotrophic prokaryotes, p. 267-285. In E. Rosenberg, E. F. DeLong, F. Thompson, S. Lory, and E. Stackebrandt (ed.), The prokaryotes, fourth edition. Springer, New York, p. 267-285.
5. Dumont, M. G., and J. C. Murrell. 2005. Stable isotope probing-linking microbial identity to function. Nature Rev. Microbiol. 3:499-504.
6. Kalyuzhnaya, M. G., A. Lapidus, N. Ivanova, A. C. Copeland, A. C. McHardy, E. Szeto, A. Salamov, I. V. Grigoriev, D. Suciu, S. R. Levine, V. M. Markowitz, I. Rigoutsos, S. G. Tringe, D. C. Bruce, P. M. Richardson, M. E. Lidstrom, and L. Chistoserdova. 2008. High resolution metagenomics targets major functional types in complex microbial communities. Nature Biotechnol. 26:1029-1034.
7. Lapidus, A., A. Clum, K. LaButti, M. G. Kalyuzhnaya, S. Lim, D. A. C. Beck, T. Glavina del Rio, M. Nolan, K. Mavromatis, M. Huntemann, S. Lucas, M. E. Lidstrom, N. Ivanova, and L. Chistoserdova. 2011. Genomes of three methylotrophs from a single niche uncover the genetic and metabolic divergence of the Methylophilaceae. J. Bacteriol. 193:3757-3764.
8. Modin, O., K. Fukushi, and K. Yamamoto. 2007. Denitrification with methane as external carbon source. Water Res. 41:2726-2738.
9. Mustakhimov, I., M. G. Kalyuzhnaya, M. E. Lidstrom, and L. Chistoserdova. 2013. Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants. J. Bacteriol. 195:2207-2211.
10. van der Ha, D., I. Vanwonterghem, S. Hoefman, P. De Vos, and N. Boon. 2013. Selection of associated heterotrophs by methane-oxidizing bacteria at different copper concentrations. Antonie Van Leeuwenhoek 103:527-537.