Bubble Dynamics in Double-Stranded DNA

Physical Review Letters

Volumn 90, Issue 13, 2003, Pages 4-

  Altan Bonnet, Grégoire ^a   Libchaber, Albert ^a   Krichevsky, Oleg ^a,b  

^a ROCKEFELLER UNIVERSITY   (United States)

^b BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84885168287     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.90.138101     Document Type: Article

References (19)

1. J. SantaLucia, Jr., Proc. Natl. Acad. Sci. U.S.A.PNASA610.1073/pnas.95.4.1460 95, 1460 (1998).
2. M. Peyrard, Europhys. Lett. 44, 271 (1998).
3. A. Campa, Phys. Rev. EPLEEE810.1103/PhysRevE.63.021901 63, 21901 (2001).
4. T. Dauxois, M. Peyrard, and A.R. Bishop, Phys. Rev. EPLEEE8 47, R44 (1993).
5. R.M. Fye and C.J. Benham, Phys. Rev. EPLEEE810.1103/PhysRevE.59.3408 59, 3408 (1999).
6. A. Kornberg and T.A. Baker, DNA Replication (W.H. Freeman, New York, 1992).
7. Y. Kafri, D. Mukamel, and L. Peliti, Phys. Rev. Lett.10.1103/PhysRevLett.85.4988 85, 4988 (2000).
8. J.F. Léger et al, Proc. Natl. Acad. Sci. U.S.A.PNASA610.1073/pnas.95.21.12295 95, 12295 (1998).
9. M. Guéron and J.L. Leroy, Methods Enzymol.MENZAU 261, 383 (1995).
10. S. Tyagi and F.R. Kramer, Nat. Biotechnol.NABIF9 14, 303 (1996).
11. D. Magde, E. Elson, and W.W. Webb, Phys. Rev. Lett.10.1103/PhysRevLett.29.705 29, 705 (1972).
12. R. Rigler et al, Eur. Biophys. J.EBJOE8 22, 169 (1993).
13. G. Bonnet, O. Krichevsky, and A. Libchaber, Proc. Natl. Acad. Sci. U.S.A.PNASA610.1073/pnas.95.15.8602 95, 8602 (1998).
14. J. Telser, K.A. Cruickshank, L.E. Morrison, and T.L. Netzel, J. Am. Chem Soc. 111, 6966 (1989).
15. B.R. Amirikyan, A.V. Vologodskii, and Y. Lyubchenko, Nucleic Acids Res. 9, 5469 (1981).
16. C.J. Benham, J. Mol. Biol. 225, 835 (1992).
17. See EPAPS Document No.�E-PRLTAO-90-028310 for full analytical derivation of formula 3. A direct link to this document may be found in the online article’s HTML reference section. The document may also be reached via the EPAPS homepage (http://www.aip.org/pubservs/epaps.html) or from ftp.aip.org in the directory /epaps/. See the EPAPS homepage for more information.
18. Z. Farkas and T. Fülöp, J. Phys. AJPHAC510.1088/0305-4470/34/15/301 34, 3191 (2001).
19. V.A. Bloomfield, D.M. Crothers, and I. Tinoco, Nucleic Acids: Structures, Properties, and Functions (University Science Books, Sausalito, CA, 2000).