메뉴 건너뛰기




Volumn 73, Issue 19, 2013, Pages 6036-6045

Double minute chromosomes in glioblastoma multiforme are revealed by precise reconstruction of oncogenic amplicons

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

EID: 84885074156     PISSN: 00085472     EISSN: 15387445     Source Type: Journal    
DOI: 10.1158/0008-5472.CAN-13-0186     Document Type: Article
Times cited : (80)

References (33)
  • 1
    • 66349083341 scopus 로고    scopus 로고
    • A geometric approach for classification and comparison of structural variants
    • Sindi S, Helman E, Bashir A, Raphael BJ. A geometric approach for classification and comparison of structural variants. Bioinformatics 2009;25:i222-30.
    • (2009) Bioinformatics , vol.25
    • Sindi, S.1    Helman, E.2    Bashir, A.3    Raphael, B.J.4
  • 2
    • 69549116107 scopus 로고    scopus 로고
    • BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
    • Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Meth 2009;6:677-81.
    • (2009) Nat Meth , vol.6 , pp. 677-681
    • Chen, K.1    Wallis, J.W.2    McLellan, M.D.3    Larson, D.E.4    Kalicki, J.M.5    Pohl, C.S.6
  • 3
    • 80053385552 scopus 로고    scopus 로고
    • Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion
    • Bass AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y, Cibulskis K, et al. Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion. Nat Genet 2011;43:964-8.
    • (2011) Nat Genet , vol.43 , pp. 964-968
    • Bass, A.J.1    Lawrence, M.S.2    Brace, L.E.3    Ramos, A.H.4    Drier, Y.5    Cibulskis, K.6
  • 4
    • 0020037616 scopus 로고
    • Double minutes in human tumor cells
    • Barker PE. Double minutes in human tumor cells. Cancer Genet Cytogenet 1982;5:81-94.
    • (1982) Cancer Genet Cytogenet , vol.5 , pp. 81-94
    • Barker, P.E.1
  • 5
    • 51849083862 scopus 로고    scopus 로고
    • Binomial mitotic segregation of MYCN-carrying double minutes in neuroblastoma illustrates the role of randomness in oncogene amplification
    • Lundberg G, Rosengren AH, Hakanson U, Stewenius H, Jin Y, Stewenius Y, et al. Binomial mitotic segregation of MYCN-carrying double minutes in neuroblastoma illustrates the role of randomness in oncogene amplification. PLoS ONE 2008;3:e3099.
    • (2008) PLoS ONE , vol.3
    • Lundberg, G.1    Rosengren, A.H.2    Hakanson, U.3    Stewenius, H.4    Jin, Y.5    Stewenius, Y.6
  • 7
    • 0017724679 scopus 로고
    • Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line
    • Balaban-Malenbaum G, Gilbert F. Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line. Science 1977;198:739-41.
    • (1977) Science , vol.198 , pp. 739-741
    • Balaban-Malenbaum, G.1    Gilbert, F.2
  • 9
    • 0034049468 scopus 로고    scopus 로고
    • Amplification of the MLL gene on double minutes, a homogeneously staining region, and ring chromosomes in five patients with acute myeloid leukemia or myelodysplastic syndrome
    • Streubel B, Valent P, Jager U, Edelhauser M, Wandt H, Wagner T, et al. Amplification of the MLL gene on double minutes, a homogeneously staining region, and ring chromosomes in five patients with acute myeloid leukemia or myelodysplastic syndrome. Genes Chromosomes Cancer 2000;27:380-6.
    • (2000) Genes Chromosomes Cancer , vol.27 , pp. 380-386
    • Streubel, B.1    Valent, P.2    Jager, U.3    Edelhauser, M.4    Wandt, H.5    Wagner, T.6
  • 10
    • 77956277959 scopus 로고    scopus 로고
    • Geneamplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure
    • Cold Spring Harbor Laboratory Press
    • Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, et al. Geneamplification as double minutes or homogeneously staining regions in solid tumors: origin and structure. Genome Res. Cold Spring Harbor Laboratory Press; 2010;20:1198-206.
    • (2010) Genome Res , vol.20 , pp. 1198-1206
    • Storlazzi, C.T.1    Lonoce, A.2    Guastadisegni, M.C.3    Trombetta, D.4    D'Addabbo, P.5    Daniele, G.6
  • 11
    • 0023752838 scopus 로고
    • Formation of double minutes by breakdown of a homogeneously staining region in a refractory anemia with excess blasts
    • Brookwell R, Hunt FA. Formation of double minutes by breakdown of a homogeneously staining region in a refractory anemia with excess blasts. Cancer Genet Cytogenet 1988;34:47-52.
    • (1988) Cancer Genet Cytogenet , vol.34 , pp. 47-52
    • Brookwell, R.1    Hunt, F.A.2
  • 12
    • 37549049398 scopus 로고    scopus 로고
    • Double minutes (dmin) and homogeneously staining regions (hsr) in myeloid disorders: A new case suggesting that dmin form hsr in vivo
    • Reddy KS. Double minutes (dmin) and homogeneously staining regions (hsr) in myeloid disorders: a new case suggesting that dmin form hsr in vivo. Cytogenet Genome Res 2007;119:53-9.
    • (2007) Cytogenet Genome Res , vol.119 , pp. 53-59
    • Reddy, K.S.1
  • 15
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 16
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010;26:841-2.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 17
    • 33846026008 scopus 로고    scopus 로고
    • Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis
    • Kuttler F, Mai S. Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis. Semin Cancer Biol 2007;17:56-64.
    • (2007) Semin Cancer Biol , vol.17 , pp. 56-64
    • Kuttler, F.1    Mai, S.2
  • 18
    • 3843101398 scopus 로고    scopus 로고
    • Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas
    • Vogt N, Lefévre S-H, Apiou F, Dutrillaux A-M, Cör A, Leuraud P, et al. Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas. Proc Natl Acad Sci U S A 2004;101:11368-73.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11368-11373
    • Vogt, N.1    Lefévre, S.-H.2    Apiou, F.3    Dutrillaux, A.-M.4    Cör, A.5    Leuraud, P.6
  • 21
    • 1842557330 scopus 로고    scopus 로고
    • Crystal structure of human carboxypeptidase M, a membrane-bound enzyme that regulates peptide hormone activity
    • Reverter D, Maskos K, Tan F, Skidgel RA, Bode W. Crystal structure of human carboxypeptidase M, a membrane-bound enzyme that regulates peptide hormone activity. J Mol Biol 2004;338:257-69.
    • (2004) J Mol Biol , vol.338 , pp. 257-269
    • Reverter, D.1    Maskos, K.2    Tan, F.3    Skidgel, R.A.4    Bode, W.5
  • 22
    • 78650959663 scopus 로고    scopus 로고
    • Massive genomic rearrangement acquired in a single catastrophic event during cancer development
    • Stephens PJ, Greenman CD, Fu B, Yang F, Bignell GR, Mudie LJ, et al. Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell 2011;144:27-40.
    • (2011) Cell , vol.144 , pp. 27-40
    • Stephens, P.J.1    Greenman, C.D.2    Fu, B.3    Yang, F.4    Bignell, G.R.5    Mudie, L.J.6
  • 23
    • 54849404458 scopus 로고    scopus 로고
    • MMEJ repair of double-strand breaks (director's cut): Deleted sequences and alternative endings
    • McVey M, Lee SE. MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings. Trends Genet 2008;24:529-38.
    • (2008) Trends Genet , vol.24 , pp. 529-538
    • McVey, M.1    Lee, S.E.2
  • 26
    • 0029083169 scopus 로고
    • Extracellular conversion of epidermal growth factor (EGF) to des-Arg53-EGF by carboxypeptidase M
    • McGwire GB, Skidgel RA. Extracellular conversion of epidermal growth factor (EGF) to des-Arg53-EGF by carboxypeptidase M. J Biol Chem 1995;270:17154-8.
    • (1995) J Biol Chem , vol.270 , pp. 17154-17158
    • McGwire, G.B.1    Skidgel, R.A.2
  • 27
    • 84862907577 scopus 로고    scopus 로고
    • Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations
    • Rausch T, Jones D T W, Zapatka M, Stutz AM, Zichner T, Weischenfeldt J, et al. Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations. Cell 2012;148:59-71.
    • (2012) Cell , vol.148 , pp. 59-71
    • Rausch, T.1    Jones, D.T.W.2    Zapatka, M.3    Stutz, A.M.4    Zichner, T.5    Weischenfeldt, J.6
  • 29
    • 57049103401 scopus 로고    scopus 로고
    • Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers
    • Skog J, Würdinger T, van Rijn S, Meijer DH, Gainche L, Curry WT, et al. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nature 2008;10:1470-6.
    • (2008) Nature , vol.10 , pp. 1470-1476
    • Skog, J.1    Würdinger, T.2    Van Rijn, S.3    Meijer, D.H.4    Gainche, L.5    Curry, W.T.6
  • 30
    • 79551608032 scopus 로고    scopus 로고
    • Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences
    • NIH Public Access
    • Balaj L, Lessard R, Dai L, Cho Y-J, Pomeroy SL, Breakefield XO, et al. Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences. Nat Comms. NIH Public Access; 2011;2:180.
    • (2011) Nat Comms , vol.2 , pp. 180
    • Balaj, L.1    Lessard, R.2    Dai, L.3    Cho, Y.-J.4    Pomeroy, S.L.5    Breakefield, X.O.6
  • 31
    • 79957458567 scopus 로고    scopus 로고
    • Cell-free nucleic acids as biomarkers in cancer patients
    • Schwarzenbach H, Hoon D S B, Pantel K. Cell-free nucleic acids as biomarkers in cancer patients. Nature 2011;11:426-37.
    • (2011) Nature , vol.11 , pp. 426-437
    • Schwarzenbach, H.1    Hoon, D.S.B.2    Pantel, K.3
  • 32
    • 75849139815 scopus 로고    scopus 로고
    • Serum DNA can define tumor-specific genetic and epigenetic markers in gliomas of various grades
    • Lavon I, Refael M, Zelikovitch B, Shalom E, Siegal T. Serum DNA can define tumor-specific genetic and epigenetic markers in gliomas of various grades. Neuro-Oncology 2010;12:173-80.
    • (2010) Neuro-Oncology , vol.12 , pp. 173-180
    • Lavon, I.1    Refael, M.2    Zelikovitch, B.3    Shalom, E.4    Siegal, T.5
  • 33
    • 84870312106 scopus 로고    scopus 로고
    • Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing
    • Leary RJ, Sausen M, Kinde I, Papadopoulos N, Carpten JD, Craig D, et al. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci Transl Med 2012;4:162ra154.
    • (2012) Sci Transl Med , vol.4
    • Leary, R.J.1    Sausen, M.2    Kinde, I.3    Papadopoulos, N.4    Carpten, J.D.5    Craig, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.