-
1
-
-
66349083341
-
A geometric approach for classification and comparison of structural variants
-
Sindi S, Helman E, Bashir A, Raphael BJ. A geometric approach for classification and comparison of structural variants. Bioinformatics 2009;25:i222-30.
-
(2009)
Bioinformatics
, vol.25
-
-
Sindi, S.1
Helman, E.2
Bashir, A.3
Raphael, B.J.4
-
2
-
-
69549116107
-
BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Meth 2009;6:677-81.
-
(2009)
Nat Meth
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
-
3
-
-
80053385552
-
Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion
-
Bass AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y, Cibulskis K, et al. Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion. Nat Genet 2011;43:964-8.
-
(2011)
Nat Genet
, vol.43
, pp. 964-968
-
-
Bass, A.J.1
Lawrence, M.S.2
Brace, L.E.3
Ramos, A.H.4
Drier, Y.5
Cibulskis, K.6
-
4
-
-
0020037616
-
Double minutes in human tumor cells
-
Barker PE. Double minutes in human tumor cells. Cancer Genet Cytogenet 1982;5:81-94.
-
(1982)
Cancer Genet Cytogenet
, vol.5
, pp. 81-94
-
-
Barker, P.E.1
-
5
-
-
51849083862
-
Binomial mitotic segregation of MYCN-carrying double minutes in neuroblastoma illustrates the role of randomness in oncogene amplification
-
Lundberg G, Rosengren AH, Hakanson U, Stewenius H, Jin Y, Stewenius Y, et al. Binomial mitotic segregation of MYCN-carrying double minutes in neuroblastoma illustrates the role of randomness in oncogene amplification. PLoS ONE 2008;3:e3099.
-
(2008)
PLoS ONE
, vol.3
-
-
Lundberg, G.1
Rosengren, A.H.2
Hakanson, U.3
Stewenius, H.4
Jin, Y.5
Stewenius, Y.6
-
7
-
-
0017724679
-
Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line
-
Balaban-Malenbaum G, Gilbert F. Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line. Science 1977;198:739-41.
-
(1977)
Science
, vol.198
, pp. 739-741
-
-
Balaban-Malenbaum, G.1
Gilbert, F.2
-
8
-
-
0344560607
-
MYCN gene amplification. Identification of cell populations containing double minutes and homogeneously staining regions in neuroblastoma tumors
-
Yoshimoto M, Caminada De Toledo SR, Monteiro Caran EM, de Seixas MT, de Martino Lee ML, de Campos Vieira Abib S, et al. MYCN gene amplification. Identification of cell populations containing double minutes and homogeneously staining regions in neuroblastoma tumors. Am J Pathol 1999;155:1439-43.
-
(1999)
Am J Pathol
, vol.155
, pp. 1439-1443
-
-
Yoshimoto, M.1
Caminada De Toledo, S.R.2
Monteiro Caran, E.M.3
De Seixas, M.T.4
De Martino Lee, M.L.5
De Campos Vieira Abib, S.6
-
9
-
-
0034049468
-
Amplification of the MLL gene on double minutes, a homogeneously staining region, and ring chromosomes in five patients with acute myeloid leukemia or myelodysplastic syndrome
-
Streubel B, Valent P, Jager U, Edelhauser M, Wandt H, Wagner T, et al. Amplification of the MLL gene on double minutes, a homogeneously staining region, and ring chromosomes in five patients with acute myeloid leukemia or myelodysplastic syndrome. Genes Chromosomes Cancer 2000;27:380-6.
-
(2000)
Genes Chromosomes Cancer
, vol.27
, pp. 380-386
-
-
Streubel, B.1
Valent, P.2
Jager, U.3
Edelhauser, M.4
Wandt, H.5
Wagner, T.6
-
10
-
-
77956277959
-
Geneamplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure
-
Cold Spring Harbor Laboratory Press
-
Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, et al. Geneamplification as double minutes or homogeneously staining regions in solid tumors: origin and structure. Genome Res. Cold Spring Harbor Laboratory Press; 2010;20:1198-206.
-
(2010)
Genome Res
, vol.20
, pp. 1198-1206
-
-
Storlazzi, C.T.1
Lonoce, A.2
Guastadisegni, M.C.3
Trombetta, D.4
D'Addabbo, P.5
Daniele, G.6
-
11
-
-
0023752838
-
Formation of double minutes by breakdown of a homogeneously staining region in a refractory anemia with excess blasts
-
Brookwell R, Hunt FA. Formation of double minutes by breakdown of a homogeneously staining region in a refractory anemia with excess blasts. Cancer Genet Cytogenet 1988;34:47-52.
-
(1988)
Cancer Genet Cytogenet
, vol.34
, pp. 47-52
-
-
Brookwell, R.1
Hunt, F.A.2
-
12
-
-
37549049398
-
Double minutes (dmin) and homogeneously staining regions (hsr) in myeloid disorders: A new case suggesting that dmin form hsr in vivo
-
Reddy KS. Double minutes (dmin) and homogeneously staining regions (hsr) in myeloid disorders: a new case suggesting that dmin form hsr in vivo. Cytogenet Genome Res 2007;119:53-9.
-
(2007)
Cytogenet Genome Res
, vol.119
, pp. 53-59
-
-
Reddy, K.S.1
-
13
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009;25:2078-9.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
14
-
-
84863393305
-
Estimation of rearrangement phylogeny for cancer genomes
-
Greenman CD, Pleasance ED, Newman S, Yang F, Fu B, Nik-Zainal S, et al. Estimation of rearrangement phylogeny for cancer genomes. Genome Res 2012;22:346-61.
-
(2012)
Genome Res
, vol.22
, pp. 346-361
-
-
Greenman, C.D.1
Pleasance, E.D.2
Newman, S.3
Yang, F.4
Fu, B.5
Nik-Zainal, S.6
-
15
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-60.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
16
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010;26:841-2.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
17
-
-
33846026008
-
Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis
-
Kuttler F, Mai S. Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis. Semin Cancer Biol 2007;17:56-64.
-
(2007)
Semin Cancer Biol
, vol.17
, pp. 56-64
-
-
Kuttler, F.1
Mai, S.2
-
18
-
-
3843101398
-
Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas
-
Vogt N, Lefévre S-H, Apiou F, Dutrillaux A-M, Cör A, Leuraud P, et al. Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas. Proc Natl Acad Sci U S A 2004;101:11368-73.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11368-11373
-
-
Vogt, N.1
Lefévre, S.-H.2
Apiou, F.3
Dutrillaux, A.-M.4
Cör, A.5
Leuraud, P.6
-
19
-
-
79953068658
-
Structural regulation of cullin-RING ubiquitin ligase complexes
-
Duda DM, Scott DC, Calabrese MF, Zimmerman ES, Zheng N, Schulman BA. Structural regulation of cullin-RING ubiquitin ligase complexes. Curr Opin Struct Biol 2011;21:257-64.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 257-264
-
-
Duda, D.M.1
Scott, D.C.2
Calabrese, M.F.3
Zimmerman, E.S.4
Zheng, N.5
Schulman, B.A.6
-
21
-
-
1842557330
-
Crystal structure of human carboxypeptidase M, a membrane-bound enzyme that regulates peptide hormone activity
-
Reverter D, Maskos K, Tan F, Skidgel RA, Bode W. Crystal structure of human carboxypeptidase M, a membrane-bound enzyme that regulates peptide hormone activity. J Mol Biol 2004;338:257-69.
-
(2004)
J Mol Biol
, vol.338
, pp. 257-269
-
-
Reverter, D.1
Maskos, K.2
Tan, F.3
Skidgel, R.A.4
Bode, W.5
-
22
-
-
78650959663
-
Massive genomic rearrangement acquired in a single catastrophic event during cancer development
-
Stephens PJ, Greenman CD, Fu B, Yang F, Bignell GR, Mudie LJ, et al. Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell 2011;144:27-40.
-
(2011)
Cell
, vol.144
, pp. 27-40
-
-
Stephens, P.J.1
Greenman, C.D.2
Fu, B.3
Yang, F.4
Bignell, G.R.5
Mudie, L.J.6
-
23
-
-
54849404458
-
MMEJ repair of double-strand breaks (director's cut): Deleted sequences and alternative endings
-
McVey M, Lee SE. MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings. Trends Genet 2008;24:529-38.
-
(2008)
Trends Genet
, vol.24
, pp. 529-538
-
-
McVey, M.1
Lee, S.E.2
-
24
-
-
84885074034
-
The somatic genomic landscape of glioblastoma
-
In Press
-
Brennan CW, Verhaak R G W, McKenna A, Campos B, Noushmehr H, Salama SR, et al. The somatic genomic landscape of glioblastoma. Cell 2013; In Press.
-
(2013)
Cell
-
-
Brennan, C.W.1
Verhaak, R.G.W.2
McKenna, A.3
Campos, B.4
Noushmehr, H.5
Salama, S.R.6
-
25
-
-
0028800035
-
Frequent expression of a mutant epidermal growth factor receptor in multiple human tumors
-
Moscatello DK, Holgado-Madruga M, Godwin AK, Ramirez G, Gunn G, Zoltick PW, et al. Frequent expression of a mutant epidermal growth factor receptor in multiple human tumors. Cancer Res 1995;55:5536-9.
-
(1995)
Cancer Res
, vol.55
, pp. 5536-5539
-
-
Moscatello, D.K.1
Holgado-Madruga, M.2
Godwin, A.K.3
Ramirez, G.4
Gunn, G.5
Zoltick, P.W.6
-
26
-
-
0029083169
-
Extracellular conversion of epidermal growth factor (EGF) to des-Arg53-EGF by carboxypeptidase M
-
McGwire GB, Skidgel RA. Extracellular conversion of epidermal growth factor (EGF) to des-Arg53-EGF by carboxypeptidase M. J Biol Chem 1995;270:17154-8.
-
(1995)
J Biol Chem
, vol.270
, pp. 17154-17158
-
-
McGwire, G.B.1
Skidgel, R.A.2
-
27
-
-
84862907577
-
Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations
-
Rausch T, Jones D T W, Zapatka M, Stutz AM, Zichner T, Weischenfeldt J, et al. Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations. Cell 2012;148:59-71.
-
(2012)
Cell
, vol.148
, pp. 59-71
-
-
Rausch, T.1
Jones, D.T.W.2
Zapatka, M.3
Stutz, A.M.4
Zichner, T.5
Weischenfeldt, J.6
-
28
-
-
84864425646
-
Subgroup-specific structural variation across 1, 000 medulloblastoma genomes
-
Northcott PA, Shih D J H, Peacock J, Garzia L, Morrissy AS, Zichner T, et al. Subgroup-specific structural variation across 1, 000 medulloblastoma genomes. Nature 2012;488:49-56.
-
(2012)
Nature
, vol.488
, pp. 49-56
-
-
Northcott, P.A.1
Shih, D.J.H.2
Peacock, J.3
Garzia, L.4
Morrissy, A.S.5
Zichner, T.6
-
29
-
-
57049103401
-
Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers
-
Skog J, Würdinger T, van Rijn S, Meijer DH, Gainche L, Curry WT, et al. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nature 2008;10:1470-6.
-
(2008)
Nature
, vol.10
, pp. 1470-1476
-
-
Skog, J.1
Würdinger, T.2
Van Rijn, S.3
Meijer, D.H.4
Gainche, L.5
Curry, W.T.6
-
30
-
-
79551608032
-
Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences
-
NIH Public Access
-
Balaj L, Lessard R, Dai L, Cho Y-J, Pomeroy SL, Breakefield XO, et al. Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences. Nat Comms. NIH Public Access; 2011;2:180.
-
(2011)
Nat Comms
, vol.2
, pp. 180
-
-
Balaj, L.1
Lessard, R.2
Dai, L.3
Cho, Y.-J.4
Pomeroy, S.L.5
Breakefield, X.O.6
-
31
-
-
79957458567
-
Cell-free nucleic acids as biomarkers in cancer patients
-
Schwarzenbach H, Hoon D S B, Pantel K. Cell-free nucleic acids as biomarkers in cancer patients. Nature 2011;11:426-37.
-
(2011)
Nature
, vol.11
, pp. 426-437
-
-
Schwarzenbach, H.1
Hoon, D.S.B.2
Pantel, K.3
-
32
-
-
75849139815
-
Serum DNA can define tumor-specific genetic and epigenetic markers in gliomas of various grades
-
Lavon I, Refael M, Zelikovitch B, Shalom E, Siegal T. Serum DNA can define tumor-specific genetic and epigenetic markers in gliomas of various grades. Neuro-Oncology 2010;12:173-80.
-
(2010)
Neuro-Oncology
, vol.12
, pp. 173-180
-
-
Lavon, I.1
Refael, M.2
Zelikovitch, B.3
Shalom, E.4
Siegal, T.5
-
33
-
-
84870312106
-
Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing
-
Leary RJ, Sausen M, Kinde I, Papadopoulos N, Carpten JD, Craig D, et al. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci Transl Med 2012;4:162ra154.
-
(2012)
Sci Transl Med
, vol.4
-
-
Leary, R.J.1
Sausen, M.2
Kinde, I.3
Papadopoulos, N.4
Carpten, J.D.5
Craig, D.6
|