Expression of calcium-dependent protein kinase (CDPK) genes under abiotic stress conditions in wild-growing grapevine Vitis amurensis

Journal of Plant Physiology

Volumn 170, Issue 17, 2013, Pages 1491-1500

  Dubrovina, Alexandra S ^a   Kiselev, Konstantin V ^a   Khristenko, Valeriya S ^a,b  

^a INSTITUTE OF BIOLOGY AND SOIL SCIENCE   (Russian Federation)

^b FAR EASTERN FEDERAL UNIVERSITY   (Russian Federation)

Author keywords

Abiotic stress; CDPK; Gene expression; Osmotic and temperature stress; Vitis amurensis

Indexed keywords

VITACEAE; VITIS; VITIS AMURENSIS;

ABSCISIC ACID; CALCIUM BINDING PROTEIN; CALCIUM-DEPENDENT PROTEIN KINASE; PROTEIN KINASE; REACTIVE OXYGEN METABOLITE; VEGETABLE PROTEIN;

ABA; ABIOTIC STRESS; AMINO ACID SEQUENCE; ARTICLE; CDPK; DNA SEQUENCE; ENZYMOLOGY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETICS; METABOLISM; MOLECULAR CLONING; OSMOTIC AND TEMPERATURE STRESS; OSMOTIC PRESSURE; PHYLOGENY; PHYSIOLOGICAL STRESS; PHYSIOLOGY; ROS; SEQUENCE ANALYSIS; TEMPERATURE; VITIS; VITIS AMURENSIS;

ABA; ABIOTIC STRESS; ABSCISIC ACID; CALCIUM-DEPENDENT PROTEIN KINASE; CDPK; GENE EXPRESSION; OSMOTIC AND TEMPERATURE STRESS; REACTIVE OXYGEN SPECIES; ROS; VITIS AMURENSIS;

AMINO ACID SEQUENCE; CALCIUM-BINDING PROTEINS; CLONING, MOLECULAR; GENE EXPRESSION PROFILING; OSMOTIC PRESSURE; PHYLOGENY; PLANT PROTEINS; PROTEIN KINASES; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN; STRESS, PHYSIOLOGICAL; TEMPERATURE; VITIS;

EID: 84884974117     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2013.06.014     Document Type: Article

References (41)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
2. Asano T., Tanaka N., Yang G., Hayashi N., Komatsu S. Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice. Plant Cell Physiol 2005, 46:356-366.
3. Asano T., Hayashi N., Kikuchi S., Ohsugi R. CDPK-mediated abiotic stress signaling. Plant Signal Behav 2012, 7:817-821.
4. Bekesiova I., Nap J.P., Mlynarova L. Isolation of high quality DNA and RNA from leaves of the carnivorous plant Drosera rotundifolia. Plant Mol Biol Rep 1999, 17:269-277.
5. Boudsocq M., Sheen J. CDPKs in immune and stress signaling. Trends Plant Sci 2013, 18:30-40.
6. Boudsocq M., Droillard M.J., Regad L., Laurière C. Characterization of Arabidopsis calcium-dependent protein kinases: activated or not by calcium?. Biochem J 2012, 447:291-299.
7. Chung E., Park J.M., Oh S.K., Joung Y.H., Lee S., Choi D. Molecular and biochemical characterization of the Capsicum annuum calcium-dependent protein kinase 3 (CaCDPK3) gene induced by abiotic and biotic stresses. Planta 2004, 220:286-295.
8. Cheng S.H., Willmann M.R., Chen H.C., Sheen J. Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol 2002, 129:469-485.
9. Choi H.I., Park H.J., Park J.H., Kim S., Im M.Y., Seo H.H., et al. Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid responsive gene expression, and modulates its activity. Plant Physiol 2005, 139:1750-1761.
10. Das R., Pandey G.K. Expressional analysis and role of calcium regulated kinases in abiotic stress signaling. Curr Genomics 2010, 11:2-13.
11. 2+ sensors in plant signalling. Biochem J 2009, 425:27-40.
12. Dubrovina A.S., Kiselev K.V., Veselova M.V., Isaeva G.A., Fedoreyev S.A., Zhuravlev Y.N. Enhanced resveratrol accumulation in rolB transgenic cultures of Vitis amurensis correlates with unusual changes in CDPK gene expression. J Plant Physiol 2009, 166:1194-1206.
13. Falquet L., Pagni M., Bucher P., Hulo N., Sigrist C.J., Hofmann K., et al. The PROSITE database, its status in 2002. Nucleic Acids Res 2002, 30:235-238.
14. Franz S., Ehlert B., Liese A., Kurth J., Cazalé A.C., Romeis T. Calcium-dependent protein kinase CPK21 functions in abiotic stress response in Arabidopsis thaliana. Mol Plant 2011, 4:83-96.
15. 2+ affinities. Proc Natl Acad Sci U S A 2010, 107:8023-8028.
16. Harmon A.C., Gribskov M., Gubrium E., Harper J.F. The CDPK superfamily of protein kinases. New Phytol 2001, 151:175-183.
17. Huang K.S., Lin M., Cheng G.-F. Anti-inflammatory tetramers of resveratrol from the roots of Vitis amurensis and the conformations of the seven-membered ring in some oligostilbenes. Phytochemistry 2001, 58:357-362.
18. Jaillon O., Aury J.M., Noel B., Policriti A., Clepet C., Casagrande A., et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467.
19. 2+-sufficient and -deficient growth regimens. J Plant Physiol 2011, 168:2272-2277.
20. Jaworski K., Pawełek A., Kopcewicz J., Szmidt-Jaworska A. The calcium-dependent protein kinase (PnCDPK1) is involved in Pharbitis nil flowering. J Plant Physiol 2012, 169:1578-1585.
21. Kiselev K.V., Dubrovina A.S. A new method for analysing gene expression based on frequency analysis of RT-PCR products obtained with degenerate primers. Acta Physiol Plant 2010, 32:495-502.
22. Kiselev K.V., Dubrovina A.S., Shumakova O.A., Karetin Y.A., Manyakhin A.Y. Structure and expression profiling of a novel calcium-dependent protein kinase gene, CDPK3a, in leaves, stems, grapes, and cell cultures of wild-growing grapevine Vitis amurensis Rupr. Plant Cell Rep 2013, 32:431-442.
23. Kobayashi M., Ohura I., Kawakita K., Yokota N., Fujiwara M., Shimamoto K., et al. Calcium-dependent protein kinases regulate the production of reactive oxygen species by potato NADPH oxidase. Plant Cell 2007, 19:1065-1080.
24. 2+channel and is a prerequisite for gating by abscisic acid. Plant J 2002, 32:185-194.
25. Li A.L., Zhu Y.F., Tan X.M., Wang X., Wei B., Guo H.Z., et al. Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.). Plant Mol Biol 2008, 66:429-443.
26. Liu L., Li H. Review: research progress in amur grape, Vitis amurensis Rupr. Can J Plant Sci 2013, 10.4141/cjps2012-202.
27. Ma Y.Y., Zhang Y.L., Shao H., Lu J. Differential physio-biochemical responses to cold stress of cold-tolerant and non-tolerantgrapes (Vitis L.) from China. J Agron Crop Sci 2010, 196:212-219.
28. Matschi S., Werner S., Schulze W.X., Legen J., Hilger H.H., Romeis T. Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development. Plant J 2012, 10.1111/tpj.12090.
29. Peng H.X., Huang R.L., Pan R.S. Characteristics and viticulture of wild Vitis amurensis Rupr. Guangxi Agric Sci 2000, 1:30-34.
30. Ray S., Agarwal P., Arora R., Kapoor S., Tyagi A.K. Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica). Mol Genet Genomics 2007, 278:493-505.
31. Reddy A.S., Ali G.S., Celesnik H., Day I.S. Coping with stresses: roles of calcium- and calcium/calmodulin-regulated gene expression. Plant Cell 2011, 23:2010-2032.
32. Reid K.E., Olsson N., Schlosser J., Peng F., Lund S.T. An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 2006, 6:27.
33. Shen Y.Y., Duan C.Q., Liang X.E., Zhang D.P. Membrane-associated protein kinase activities in the developing mesocarp of grape berry. J Plant Physiol 2004, 161:15-23.
34. Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2007, 2:e1326.
35. 2+-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Lett 2007, 581:1179-1189.
36. Wang C., Han J., Liu C., Kibet K.N., Kayesh E., Shangguan L., et al. Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 2012, 13:122.
37. Wang J., Chen Y., Hano Y., Nomura T., Tan R. Antioxidant activity of polyphenols from seeds of Vitis amurensis in vitro. Acta Pharmacol Sin 2000, 21:633-636.
38. Ye S., Wang L., Xie W., Wan B., Li X., Lin Y. Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Mol Biol 2009, 70:311-325.
39. Yu X.C., Li M.J., Gao G.F., Feng H.Z., Geng X.Q., Peng C.C., et al. Abscisic acid stimulates a calcium-dependent protein kinase in grape berry. Plant Physiol 2006, 140:558-579.
40. Yu X.C., Zhu S.Y., Gao G.F., Wang X.J., Zhao R., Zou K.Q., et al. Expression of a grape calcium-dependent protein kinase ACPK1 in Arabidopsis thaliana promotes plant growth and confers abscisic acid-hypersensitivity in germination, postgermination growth, and stomatal movement. Plant Mol Biol 2007, 64:531-538.
41. Zuo R., Hu R., Chai G., Xu M., Qi G., Kong Y., et al. Genome-wide identification, classification, and expression analysis of CDPK and its closely related gene families in poplar (Populus trichocarpa). Mol Biol Rep 2012, 10.1007/s11033-012-2351-z.