메뉴 건너뛰기




Volumn 9, Issue 7, 2013, Pages

Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL TRANSMISSION; BACTERIAL VIRULENCE; BIOGEOGRAPHY; DISEASE ASSOCIATION; DISEASE SEVERITY; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ASSOCIATION; GENOME ANALYSIS; KIWIFRUIT; NONHUMAN; PATHOGENICITY; PATHOTYPE; PHYLOGENY; PLANT DISEASE; PSEUDOMONAS SYRINGAE; PULSED FIELD GEL ELECTROPHORESIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84884758493     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003503     Document Type: Article
Times cited : (213)

References (99)
  • 1
    • 24944498493 scopus 로고    scopus 로고
    • Plant disease: A threat to global food security
    • Strange RN, Scott PR, (2005) Plant disease: A threat to global food security. Annu Rev Phytopathol 43: 83-116.
    • (2005) Annu Rev Phytopathol , vol.43 , pp. 83-116
    • Strange, R.N.1    Scott, P.R.2
  • 2
    • 79961170822 scopus 로고    scopus 로고
    • Improving immunity in crops: new tactics in an old game
    • Wulff BBH, Horvath DM, Ward ER, (2011) Improving immunity in crops: new tactics in an old game. Curr Opin Plant Biol 14: 468-476.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 468-476
    • Wulff, B.B.H.1    Horvath, D.M.2    Ward, E.R.3
  • 3
    • 74549162702 scopus 로고    scopus 로고
    • Expanding the paradigms of plant pathogen life history and evolution of parasitic fitness beyond agricultural boundaries
    • Morris CE, Bardin M, Kinkel LL, Moury B, Nicot PC, et al. (2009) Expanding the paradigms of plant pathogen life history and evolution of parasitic fitness beyond agricultural boundaries. PLoS Pathog 5: e1000693.
    • (2009) PLoS Pathog , vol.5
    • Morris, C.E.1    Bardin, M.2    Kinkel, L.L.3    Moury, B.4    Nicot, P.C.5
  • 4
    • 79952054419 scopus 로고    scopus 로고
    • Maladaptation in wild populations of the generalist plant pathogen Pseudomonas syringae
    • Kniskern JM, Barrett LG, Bergelson J, (2011) Maladaptation in wild populations of the generalist plant pathogen Pseudomonas syringae. Evolution 65: 818-830.
    • (2011) Evolution , vol.65 , pp. 818-830
    • Kniskern, J.M.1    Barrett, L.G.2    Bergelson, J.3
  • 5
    • 33846839389 scopus 로고    scopus 로고
    • Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation
    • Stukenbrock EH, Banke S, Javan-Nikkhah M, McDonald BA, (2007) Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation. Mol Biol Evol 24: 398-411.
    • (2007) Mol Biol Evol , vol.24 , pp. 398-411
    • Stukenbrock, E.H.1    Banke, S.2    Javan-Nikkhah, M.3    McDonald, B.A.4
  • 6
    • 84866910358 scopus 로고    scopus 로고
    • A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems
    • Stukenbrock EH, Bataillon T, (2012) A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems. PLoS Pathog 8: e1002893.
    • (2012) PLoS Pathog , vol.8
    • Stukenbrock, E.H.1    Bataillon, T.2
  • 7
    • 82955200227 scopus 로고    scopus 로고
    • The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
    • Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li RQ, et al. (2011) The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res 21: 2157-2166.
    • (2011) Genome Res , vol.21 , pp. 2157-2166
    • Stukenbrock, E.H.1    Bataillon, T.2    Dutheil, J.Y.3    Hansen, T.T.4    Li, R.Q.5
  • 8
    • 84863593823 scopus 로고    scopus 로고
    • Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species
    • Stukenbrock EH, Christiansen FB, Hansen TT, Dutheil JY, Schierup MH, (2012) Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species. Proc Natl Acad Sci U S A 109: 10954-10959.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 10954-10959
    • Stukenbrock, E.H.1    Christiansen, F.B.2    Hansen, T.T.3    Dutheil, J.Y.4    Schierup, M.H.5
  • 9
    • 78650695340 scopus 로고    scopus 로고
    • Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola
    • Stukenbrock EH, Jorgensen FG, Zala M, Hansen TT, McDonald BA, et al. (2010) Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet 6: e1001189.
    • (2010) PLoS Genet , vol.6
    • Stukenbrock, E.H.1    Jorgensen, F.G.2    Zala, M.3    Hansen, T.T.4    McDonald, B.A.5
  • 10
    • 51849086869 scopus 로고    scopus 로고
    • The origins of plant pathogens in agro-ecosystems
    • Stukenbrock EH, McDonald BA, (2008) The origins of plant pathogens in agro-ecosystems. Annu Rev Phytopathol 46: 75-100.
    • (2008) Annu Rev Phytopathol , vol.46 , pp. 75-100
    • Stukenbrock, E.H.1    McDonald, B.A.2
  • 11
    • 68249120217 scopus 로고    scopus 로고
    • Advances in the study of the systematics of Actinidia Lindley
    • Li X, Li J, Doejarto DD, (2009) Advances in the study of the systematics of Actinidia Lindley. Frontiers of Biology in China 4: 55-61.
    • (2009) Frontiers of Biology in China , vol.4 , pp. 55-61
    • Li, X.1    Li, J.2    Doejarto, D.D.3
  • 12
    • 33947095121 scopus 로고    scopus 로고
    • Genetic resources of kiwifruit: domestication and breeding
    • Ferguson AR, Huang H, (2007) Genetic resources of kiwifruit: domestication and breeding. Hortic Rev 33: 1-121.
    • (2007) Hortic Rev , vol.33 , pp. 1-121
    • Ferguson, A.R.1    Huang, H.2
  • 13
    • 0343212260 scopus 로고
    • Diseases of kiwifruit
    • In: Warrington IJW, G.C., editor,Auckland: Ray Richards
    • Brook PJ (1990) Diseases of kiwifruit. In: Warrington IJW, G.C., editor. Kiwifruit: science and management. Auckland: Ray Richards. pp. 420-428.
    • (1990) Kiwifruit: Science and management , pp. 420-428
    • Brook, P.J.1
  • 14
    • 0009778525 scopus 로고
    • Occurrence of bacterial canker of kiwifruit in Japan: description of symptoms, isolation of the pathogen and screening of bacteriocides
    • Serizawa S, Ichikawa T, Takikawa Y, Tsuyumu S, Goto M, (1989) Occurrence of bacterial canker of kiwifruit in Japan: description of symptoms, isolation of the pathogen and screening of bacteriocides. Annals Phytopathol Soc of Japan 55: 427-436.
    • (1989) Annals Phytopathol Soc of Japan , vol.55 , pp. 427-436
    • Serizawa, S.1    Ichikawa, T.2    Takikawa, Y.3    Tsuyumu, S.4    Goto, M.5
  • 15
    • 84860749457 scopus 로고
    • Preliminary studies on kiwifruit diseases in Hunan province
    • Fang Y, Zhu X, Wang Y, (1990) Preliminary studies on kiwifruit diseases in Hunan province. Sichuan Fruit Science and Technology 18: 28-29.
    • (1990) Sichuan Fruit Science and Technology , vol.18 , pp. 28-29
    • Fang, Y.1    Zhu, X.2    Wang, Y.3
  • 16
    • 0012487099 scopus 로고
    • Outbreak and spread of bacterial canker in kiwifruit
    • Koh Y, Cha B, Chung H, Lee D, (1994) Outbreak and spread of bacterial canker in kiwifruit. Korean J Plant Pathol 10: 68-72.
    • (1994) Korean J Plant Pathol , vol.10 , pp. 68-72
    • Koh, Y.1    Cha, B.2    Chung, H.3    Lee, D.4
  • 17
    • 0028322672 scopus 로고
    • Occurrence of Pseudomonas syringae pv. actinidiae on Kiwifruit in Italy
    • Scortichini M, (1994) Occurrence of Pseudomonas syringae pv. actinidiae on Kiwifruit in Italy. Plant Pathol 43: 1035-1038.
    • (1994) Plant Pathol , vol.43 , pp. 1035-1038
    • Scortichini, M.1
  • 18
    • 79960004082 scopus 로고    scopus 로고
    • Outbreak of bacterial canker on Hort16A (Actinidia chinensis Planchon) caused by Pseudomonas syringae pv. actinidiae in Korea
    • Koh YJ, Kim GH, Jung JS, Lee YS, Hur JS, (2010) Outbreak of bacterial canker on Hort16A (Actinidia chinensis Planchon) caused by Pseudomonas syringae pv. actinidiae in Korea. N Z J Crop Hortic Sci 38: 275-282.
    • (2010) N Z J Crop Hortic Sci , vol.38 , pp. 275-282
    • Koh, Y.J.1    Kim, G.H.2    Jung, J.S.3    Lee, Y.S.4    Hur, J.S.5
  • 21
    • 77956295365 scopus 로고    scopus 로고
    • Molecular and phenotypic features of Pseudomonas syringae pv. actinidiae isolated during recent epidemics of bacterial canker on yellow kiwifruit (Actinidia chinensis) in central Italy
    • Ferrante P, Scortichini M, (2010) Molecular and phenotypic features of Pseudomonas syringae pv. actinidiae isolated during recent epidemics of bacterial canker on yellow kiwifruit (Actinidia chinensis) in central Italy. Plant Pathol 59: 954-962.
    • (2010) Plant Pathol , vol.59 , pp. 954-962
    • Ferrante, P.1    Scortichini, M.2
  • 22
    • 84860776735 scopus 로고    scopus 로고
    • Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of Kiwifruit outbreaks belong to the same genetic lineage
    • Mazzaglia A, Studholme DJ, Taratufolo MC, Cai RM, Almeida NF, et al. (2012) Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of Kiwifruit outbreaks belong to the same genetic lineage. PLoS One 7: e36518.
    • (2012) PLoS One , vol.7
    • Mazzaglia, A.1    Studholme, D.J.2    Taratufolo, M.C.3    Cai, R.M.4    Almeida, N.F.5
  • 23
    • 84871775296 scopus 로고    scopus 로고
    • Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae
    • Chapman JR, Taylor RK, Weir BS, Romberg MK, Vanneste JL, et al. (2012) Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae. Phytopathology 102: 1034-1044.
    • (2012) Phytopathology , vol.102 , pp. 1034-1044
    • Chapman, J.R.1    Taylor, R.K.2    Weir, B.S.3    Romberg, M.K.4    Vanneste, J.L.5
  • 24
    • 84857805558 scopus 로고    scopus 로고
    • First report of Pseudomonas syringae pv. actinidiae, the causal agent of bacterial canker of kiwifruit in France
    • Vanneste JL, Poliakoff F, Audusseau C, Cornish DA, Paillard S, et al. (2011) First report of Pseudomonas syringae pv. actinidiae, the causal agent of bacterial canker of kiwifruit in France. Plant Dis 95: 1311-1312.
    • (2011) Plant Dis , vol.95 , pp. 1311-1312
    • Vanneste, J.L.1    Poliakoff, F.2    Audusseau, C.3    Cornish, D.A.4    Paillard, S.5
  • 25
    • 84857844290 scopus 로고    scopus 로고
    • First report of Pseudomonas syringae pv. actinidiae causing kiwifruit bacterial canker in New Zealand
    • Everett K, Taylor R, Romberg M, Rees-George J, Fullerton R, et al. (2011) First report of Pseudomonas syringae pv. actinidiae causing kiwifruit bacterial canker in New Zealand. Australasian Plant Dis Notes 6: 67-71.
    • (2011) Australasian Plant Dis Notes , vol.6 , pp. 67-71
    • Everett, K.1    Taylor, R.2    Romberg, M.3    Rees-George, J.4    Fullerton, R.5
  • 26
    • 81755184030 scopus 로고    scopus 로고
    • Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species
    • Marcelletti S, Ferrante P, Petriccione M, Firrao G, Scortichini M, (2011) Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species. PLoS One 6: e27297.
    • (2011) PLoS One , vol.6
    • Marcelletti, S.1    Ferrante, P.2    Petriccione, M.3    Firrao, G.4    Scortichini, M.5
  • 27
    • 84874517965 scopus 로고    scopus 로고
    • Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China
    • Butler MI, Stockwell PA, Black MA, Day RC, Lamont IL, et al. (2013) Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One 8: e57464.
    • (2013) PLoS One , vol.8
    • Butler, M.I.1    Stockwell, P.A.2    Black, M.A.3    Day, R.C.4    Lamont, I.L.5
  • 28
    • 84876279431 scopus 로고    scopus 로고
    • Identification, virulence and distribution of two biovars of Pseudomonas syringae pv. actinidiae in New Zealand
    • Vanneste JL, Yu J, Cornish DA, Tanner DJ, Windner R, et al. (2013) Identification, virulence and distribution of two biovars of Pseudomonas syringae pv. actinidiae in New Zealand. Plant Dis 97: 708-719.
    • (2013) Plant Dis , vol.97 , pp. 708-719
    • Vanneste, J.L.1    Yu, J.2    Cornish, D.A.3    Tanner, D.J.4    Windner, R.5
  • 29
    • 84875022949 scopus 로고    scopus 로고
    • A multiplex PCR assay for detection of Pseudomonas syringae pv. actinidiae and differentiation of populations with different geographic origin
    • Balestra GM, Taratufolo MC, Vinatzer BA, Mazzaglia A, (2013) A multiplex PCR assay for detection of Pseudomonas syringae pv. actinidiae and differentiation of populations with different geographic origin. Plant Dis 97: 472-478.
    • (2013) Plant Dis , vol.97 , pp. 472-478
    • Balestra, G.M.1    Taratufolo, M.C.2    Vinatzer, B.A.3    Mazzaglia, A.4
  • 30
    • 84865683817 scopus 로고    scopus 로고
    • Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
    • Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, et al. (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet 44: 1056-1059.
    • (2012) Nat Genet , vol.44 , pp. 1056-1059
    • Holt, K.E.1    Baker, S.2    Weill, F.X.3    Holmes, E.C.4    Kitchen, A.5
  • 31
    • 78649470145 scopus 로고    scopus 로고
    • Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
    • Morelli G, Song YJ, Mazzoni CJ, Eppinger M, Roumagnac P, et al. (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet 42: 1140-1143.
    • (2010) Nat Genet , vol.42 , pp. 1140-1143
    • Morelli, G.1    Song, Y.J.2    Mazzoni, C.J.3    Eppinger, M.4    Roumagnac, P.5
  • 32
    • 80053133499 scopus 로고    scopus 로고
    • Evidence for several waves of global transmission in the seventh cholera pandemic
    • Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, et al. (2011) Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477: 462-465.
    • (2011) Nature , vol.477 , pp. 462-465
    • Mutreja, A.1    Kim, D.W.2    Thomson, N.R.3    Connor, T.R.4    Lee, J.H.5
  • 33
    • 84868201561 scopus 로고    scopus 로고
    • Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
    • Okoro CK, Kingsley RA, Connor TR, Harris SR, Parry CM, et al. (2012) Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa. Nat Genet 44: 1215-1221.
    • (2012) Nat Genet , vol.44 , pp. 1215-1221
    • Okoro, C.K.1    Kingsley, R.A.2    Connor, T.R.3    Harris, S.R.4    Parry, C.M.5
  • 34
    • 59849086092 scopus 로고    scopus 로고
    • The bacterial species challenge: making sense of genetic and ecological diversity
    • Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP, (2009) The bacterial species challenge: making sense of genetic and ecological diversity. Science 323: 741-746.
    • (2009) Science , vol.323 , pp. 741-746
    • Fraser, C.1    Alm, E.J.2    Polz, M.F.3    Spratt, B.G.4    Hanage, W.P.5
  • 35
    • 9244220669 scopus 로고    scopus 로고
    • The ecology and genetics of microbial diversity
    • Kassen R, Rainey PB, (2004) The ecology and genetics of microbial diversity. Annu Rev of Microbiol 58: 207-231.
    • (2004) Annu Rev of Microbiol , vol.58 , pp. 207-231
    • Kassen, R.1    Rainey, P.B.2
  • 36
    • 43349086724 scopus 로고
    • Two simple media for the demonstration of pyocyanin and fluorescin
    • King E, Ward M, Raney D, (1954) Two simple media for the demonstration of pyocyanin and fluorescin. J Lab Clin Med 44: 301-307.
    • (1954) J Lab Clin Med , vol.44 , pp. 301-307
    • King, E.1    Ward, M.2    Raney, D.3
  • 39
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 40
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer SA, (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6: 526-538.
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.A.1
  • 41
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
    • Chen F, Mackey AJ, Stoeckert CJ, Roos DS, (2006) OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res 34: D363-D368.
    • (2006) Nucleic Acids Res , vol.34
    • Chen, F.1    Mackey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 42
    • 79957873906 scopus 로고    scopus 로고
    • Alignment-free detection of local similarity among viral and bacterial genomes
    • Domazet-Lošo M, Haubold B, (2011) Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics 27: 1466-1472.
    • (2011) Bioinformatics , vol.27 , pp. 1466-1472
    • Domazet-Lošo, M.1    Haubold, B.2
  • 43
    • 23044471766 scopus 로고    scopus 로고
    • An algorithm for progressive multiple alignment of sequences with insertions
    • Loytynoja A, Goldman N, (2005) An algorithm for progressive multiple alignment of sequences with insertions. Proc Natl Acad Sci U S A 102: 10557-10562.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 10557-10562
    • Loytynoja, A.1    Goldman, N.2
  • 44
    • 46249095233 scopus 로고    scopus 로고
    • Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
    • Loytynoja A, Goldman N, (2008) Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320: 1632-1635.
    • (2008) Science , vol.320 , pp. 1632-1635
    • Loytynoja, A.1    Goldman, N.2
  • 45
    • 78649319201 scopus 로고    scopus 로고
    • webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
    • 10.1186/1471-2105-11-579
    • Loytynoja A, Goldman N, (2010) webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. BMC Bioinformatics 11: 579 doi:10.1186/1471-2105-11-579.
    • (2010) BMC Bioinformatics , vol.11 , pp. 579
    • Loytynoja, A.1    Goldman, N.2
  • 46
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • 10.1186/1471-2105-6-31
    • Slater GS, Birney E, (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6: 31 doi:10.1186/1471-2105-6-31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 47
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 48
    • 33847383189 scopus 로고    scopus 로고
    • Maximum likelihood methods for detecting adaptive protein evolution
    • In: Nielsen R, editor, New York: Springer-Verlag
    • Bielawski JP, Yang Z (2005) Maximum likelihood methods for detecting adaptive protein evolution. In: Nielsen R, editor. Statistical Methods in Molecular Evolution. New York: Springer-Verlag. pp. 103-124.
    • (2005) Statistical Methods in Molecular Evolution , pp. 103-124
    • Bielawski, J.P.1    Yang, Z.2
  • 49
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu NY, Wagner JR, Laird MR, Melli G, Rey S, et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26: 1608-1615.
    • (2010) Bioinformatics , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3    Melli, G.4    Rey, S.5
  • 50
    • 33750213711 scopus 로고    scopus 로고
    • Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains
    • Lindeberg M, Cartinhour S, Myers CR, Schechter LM, Schneider DJ, et al. (2006) Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains. Mol Plant-Microbe Interact 19: 1151-1158.
    • (2006) Mol Plant-Microbe Interact , vol.19 , pp. 1151-1158
    • Lindeberg, M.1    Cartinhour, S.2    Myers, C.R.3    Schechter, L.M.4    Schneider, D.J.5
  • 52
    • 23344451933 scopus 로고    scopus 로고
    • Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
    • Feil H, Feil WS, Chain P, Larimer F, DiBartolo G, et al. (2005) Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc Natl Acad Sci U S A 102: 11064-11069.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 11064-11069
    • Feil, H.1    Feil, W.S.2    Chain, P.3    Larimer, F.4    DiBartolo, G.5
  • 55
    • 23344440104 scopus 로고    scopus 로고
    • Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
    • Paulsen IT, Press C, Ravel J, Kobayashi D, Myers GS, et al. (2005) Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol 23: 873-878.
    • (2005) Nat Biotechnol , vol.23 , pp. 873-878
    • Paulsen, I.T.1    Press, C.2    Ravel, J.3    Kobayashi, D.4    Myers, G.S.5
  • 56
    • 33745087804 scopus 로고    scopus 로고
    • Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila
    • Vodovar N, Vallenet D, Cruveiller S, Rouy Z, Barbe V, et al. (2006) Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nat Biotechnol 24: 673-679.
    • (2006) Nat Biotechnol , vol.24 , pp. 673-679
    • Vodovar, N.1    Vallenet, D.2    Cruveiller, S.3    Rouy, Z.4    Barbe, V.5
  • 57
    • 79951604920 scopus 로고    scopus 로고
    • Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1
    • Matilla MA, Pizarro-Tobias P, Roca A, Fernandez M, Duque E, et al. (2011) Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1. J Bacteriol 193: 1290.
    • (2011) J Bacteriol , vol.193 , pp. 1290
    • Matilla, M.A.1    Pizarro-Tobias, P.2    Roca, A.3    Fernandez, M.4    Duque, E.5
  • 59
    • 77953693048 scopus 로고    scopus 로고
    • Detection of Pseudomonas syringae pv. actinidiae using polymerase chain reaction (PCR) primers based on the 16S-23S rDNA intertranscribed spacer region and comparison with PCR primers based on other gene regions
    • Rees-George J, Vanneste JL, Cornish DA, Pushparajah IPS, Yu J, et al. (2010) Detection of Pseudomonas syringae pv. actinidiae using polymerase chain reaction (PCR) primers based on the 16S-23S rDNA intertranscribed spacer region and comparison with PCR primers based on other gene regions. Plant Pathol 59: 453-464.
    • (2010) Plant Pathol , vol.59 , pp. 453-464
    • Rees-George, J.1    Vanneste, J.L.2    Cornish, D.A.3    Pushparajah, I.P.S.4    Yu, J.5
  • 60
    • 0041335630 scopus 로고    scopus 로고
    • The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
    • Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, et al. (2003) The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A 100: 10181-10186.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 10181-10186
    • Buell, C.R.1    Joardar, V.2    Lindeberg, M.3    Selengut, J.4    Paulsen, I.T.5
  • 61
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7: 256-276.
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 62
    • 80052380439 scopus 로고    scopus 로고
    • The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity
    • Cai RM, Lewis J, Yan SC, Liu HJ, Clarke CR, et al. (2011) The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. PLoS Pathog 7: e1002130.
    • (2011) PLoS Pathog , vol.7
    • Cai, R.M.1    Lewis, J.2    Yan, S.C.3    Liu, H.J.4    Clarke, C.R.5
  • 64
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D, (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 65
    • 0026911267 scopus 로고
    • Split decomposition: a new and useful approach to phylogenetic analysis of distance data
    • Bandelt HJ, Dress AWM, (1992) Split decomposition: a new and useful approach to phylogenetic analysis of distance data. Mol Phylogenet Evol 1: 242-252.
    • (1992) Mol Phylogenet Evol , vol.1 , pp. 242-252
    • Bandelt, H.J.1    Dress, A.W.M.2
  • 66
    • 65649123807 scopus 로고    scopus 로고
    • Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens
    • Boller T, He SY, (2009) Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens. Science 324: 742-744.
    • (2009) Science , vol.324 , pp. 742-744
    • Boller, T.1    He, S.Y.2
  • 67
    • 0002222776 scopus 로고    scopus 로고
    • HIV signature and sequence variation analysis
    • In: Learn AGRaGH, editor, Dordrecht: Kluwer Academic Publishers
    • Korber B (2000) HIV signature and sequence variation analysis. In: Learn AGRaGH, editor. Computational analysis of HIV molecular sequences. Dordrecht: Kluwer Academic Publishers. pp. 55-72.
    • (2000) Computational analysis of HIV molecular sequences , pp. 55-72
    • Korber, B.1
  • 68
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T, (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 69
    • 1642319596 scopus 로고    scopus 로고
    • Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
    • Sarkar SF, Guttman DS, (2004) Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70: 1999-2012.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1999-2012
    • Sarkar, S.F.1    Guttman, D.S.2
  • 70
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ, Spratt BG, (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55: 561-590.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 72
    • 79960944810 scopus 로고    scopus 로고
    • Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates
    • Baltrus DA, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, et al. (2011) Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog 7: e1002132.
    • (2011) PLoS Pathog , vol.7
    • Baltrus, D.A.1    Nishimura, M.T.2    Romanchuk, A.3    Chang, J.H.4    Mukhtar, M.S.5
  • 73
    • 84858234134 scopus 로고    scopus 로고
    • Identification of innate immunity elicitors using molecular signatures of natural selection
    • McCann HC, Nahal H, Thakur S, Guttman DS, (2012) Identification of innate immunity elicitors using molecular signatures of natural selection. Proc Natl Acad Sci U S A 109: 4215-4220.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 4215-4220
    • McCann, H.C.1    Nahal, H.2    Thakur, S.3    Guttman, D.S.4
  • 74
    • 0037681624 scopus 로고    scopus 로고
    • Xanthomonas citri: breaking the surface
    • Brunings AM, Gabriel DW, (2003) Xanthomonas citri: breaking the surface. Mol Plant Pathol 4: 141-157.
    • (2003) Mol Plant Pathol , vol.4 , pp. 141-157
    • Brunings, A.M.1    Gabriel, D.W.2
  • 75
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • da Silva ACR, Ferro JA, Reinach FC, Farah CS, Furlan LR, et al. (2002) Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417: 459-463.
    • (2002) Nature , vol.417 , pp. 459-463
    • da Silva, A.C.R.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5
  • 76
    • 77956324972 scopus 로고    scopus 로고
    • Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum
    • Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, et al. (2010) Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 5: e10224.
    • (2010) PLoS One , vol.5
    • Green, S.1    Studholme, D.J.2    Laue, B.E.3    Dorati, F.4    Lovell, H.5
  • 77
    • 0004175883 scopus 로고
    • Systemic invasion of plum leaves and shoots by Pseudomonas sringae pv. syringae introduced into petioles
    • Roos IMM, Hattingh MJ, (1987) Systemic invasion of plum leaves and shoots by Pseudomonas sringae pv. syringae introduced into petioles. Phytopathology 77: 1253-1257.
    • (1987) Phytopathology , vol.77 , pp. 1253-1257
    • Roos, I.M.M.1    Hattingh, M.J.2
  • 78
    • 0033136465 scopus 로고    scopus 로고
    • Plants have a sensitive perception system for the most conserved domain of bacterial flagellin
    • Felix G, Duran JD, Volko S, Boller T, (1999) Plants have a sensitive perception system for the most conserved domain of bacterial flagellin. The Plant Journal 18: 265-276.
    • (1999) The Plant Journal , vol.18 , pp. 265-276
    • Felix, G.1    Duran, J.D.2    Volko, S.3    Boller, T.4
  • 79
    • 79959384824 scopus 로고    scopus 로고
    • Prevalence and significance of plasmid maintenance functions in the virulence plasmids of pathogenic bacteria
    • Sengupta M, Austin S, (2011) Prevalence and significance of plasmid maintenance functions in the virulence plasmids of pathogenic bacteria. Infect Immun 79: 2502-2509.
    • (2011) Infect Immun , vol.79 , pp. 2502-2509
    • Sengupta, M.1    Austin, S.2
  • 80
    • 77954549624 scopus 로고    scopus 로고
    • Transcriptome analysis of the phytobacterium Xylella fastidiosa growing under xylem- based chemical conditions
    • 10.1155/2010/781365,article ID 781365
    • Ciraulo MB, Santos DS, Rodrigues A, de Oliveira MV, Rodrigues T, et al. (2010) Transcriptome analysis of the phytobacterium Xylella fastidiosa growing under xylem- based chemical conditions. J Biomed Biotechnol pp. article ID 781365 DOI:10.1155/2010/781365.
    • (2010) J Biomed Biotechnol
    • Ciraulo, M.B.1    Santos, D.S.2    Rodrigues, A.3    de Oliveira, M.V.4    Rodrigues, T.5
  • 82
    • 29044432423 scopus 로고    scopus 로고
    • Exposure to host resistance mechanisms drives evolution of bacterial virulence in plants
    • Pitman AR, Jackson RW, Mansfield JW, Kaitell V, Thwaites R, et al. (2005) Exposure to host resistance mechanisms drives evolution of bacterial virulence in plants. Curr Biol 15: 2230-2235.
    • (2005) Curr Biol , vol.15 , pp. 2230-2235
    • Pitman, A.R.1    Jackson, R.W.2    Mansfield, J.W.3    Kaitell, V.4    Thwaites, R.5
  • 83
    • 27644500162 scopus 로고    scopus 로고
    • Non-classical protein secretion in bacteria
    • 10.1186/1471-2180-5-58
    • Bendtsen JD, Kiemer L, Fausboll A, Brunak S, (2005) Non-classical protein secretion in bacteria. BMC Microbiology 5: 58 doi:10.1186/1471-2180-5-58.
    • (2005) BMC Microbiology , vol.5 , pp. 58
    • Bendtsen, J.D.1    Kiemer, L.2    Fausboll, A.3    Brunak, S.4
  • 85
    • 0347915662 scopus 로고    scopus 로고
    • Pseudomonas sytingae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter
    • Schechter LM, Roberts KA, Jamir Y, Alfano JR, Collmer A, (2004) Pseudomonas sytingae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter. J Bacteriol 186: 543-555.
    • (2004) J Bacteriol , vol.186 , pp. 543-555
    • Schechter, L.M.1    Roberts, K.A.2    Jamir, Y.3    Alfano, J.R.4    Collmer, A.5
  • 86
    • 65549149686 scopus 로고    scopus 로고
    • Mqo, a tricarboxylic acid cycle enzyme, Is required for virulence of Pseudomonas syringae pv. tomato strain DC3000 on Arabidopsis thaliana
    • Mellgren EM, Kloek AP, Kunkel BN, (2009) Mqo, a tricarboxylic acid cycle enzyme, Is required for virulence of Pseudomonas syringae pv. tomato strain DC3000 on Arabidopsis thaliana. J Bacteriol 191: 3132-3141.
    • (2009) J Bacteriol , vol.191 , pp. 3132-3141
    • Mellgren, E.M.1    Kloek, A.P.2    Kunkel, B.N.3
  • 87
    • 84866172975 scopus 로고    scopus 로고
    • Ketoglutarate transport protein KgtP is secreted through the type III secretion system and contributes to virulence in Xanthomonas oryzae pv. oryzae
    • Guo W, Cai LL, Zou HS, Ma WX, Liu XL, et al. (2012) Ketoglutarate transport protein KgtP is secreted through the type III secretion system and contributes to virulence in Xanthomonas oryzae pv. oryzae. Appl Environ Microbiol 78: 5672-5681.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5672-5681
    • Guo, W.1    Cai, L.L.2    Zou, H.S.3    Ma, W.X.4    Liu, X.L.5
  • 88
    • 33846818898 scopus 로고    scopus 로고
    • RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
    • Taghbalout A, Rothfield L, (2007) RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton. Proc Natl Acad Sci U S A 104: 1667-1672.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 1667-1672
    • Taghbalout, A.1    Rothfield, L.2
  • 89
    • 70350731306 scopus 로고    scopus 로고
    • Identification of bacterial protein markers and enolase as a plant response protein in the infection of Olea europaea subsp europaea by Pseudomonas savastanoi pv. savastanoi
    • Campos A, da Costa G, Coelho AV, Fevereiro P, (2009) Identification of bacterial protein markers and enolase as a plant response protein in the infection of Olea europaea subsp europaea by Pseudomonas savastanoi pv. savastanoi. Eur J Plant Pathol 125: 603-616.
    • (2009) Eur J Plant Pathol , vol.125 , pp. 603-616
    • Campos, A.1    da Costa, G.2    Coelho, A.V.3    Fevereiro, P.4
  • 90
    • 0034712731 scopus 로고    scopus 로고
    • The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants
    • Alfano JR, Charkowski AO, Deng W-L, Badel JL, Petnicki-Ocwieja T, et al. (2000) The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proc Natl Acad Sci U S A 97: 4856-4861.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4856-4861
    • Alfano, J.R.1    Charkowski, A.O.2    Deng, W.-L.3    Badel, J.L.4    Petnicki-Ocwieja, T.5
  • 91
    • 83255188814 scopus 로고    scopus 로고
    • Pathogen effectors target arabidopsis EDS1 and alter Its interactions with immune regulators
    • Bhattacharjee S, Halane MK, Kim SH, Gassmann W, (2011) Pathogen effectors target arabidopsis EDS1 and alter Its interactions with immune regulators. Science 334: 1405-1408.
    • (2011) Science , vol.334 , pp. 1405-1408
    • Bhattacharjee, S.1    Halane, M.K.2    Kim, S.H.3    Gassmann, W.4
  • 92
    • 79960609450 scopus 로고    scopus 로고
    • Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis
    • Nomura K, Mecey C, Lee YN, Imboden LA, Chang JH, et al. (2011) Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis. Proc Natl Acad Sci U S A 108: 10774-10779.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10774-10779
    • Nomura, K.1    Mecey, C.2    Lee, Y.N.3    Imboden, L.A.4    Chang, J.H.5
  • 93
    • 68949100365 scopus 로고    scopus 로고
    • The majority of the type III effector inventory of Pseudomonas syringae pv. tomato DC3000 can suppress plant immunity
    • Guo M, Tian F, Wamboldt Y, Alfano JR, (2009) The majority of the type III effector inventory of Pseudomonas syringae pv. tomato DC3000 can suppress plant immunity. Mol Plant-Microbe Interact 22: 1069-1080.
    • (2009) Mol Plant-Microbe Interact , vol.22 , pp. 1069-1080
    • Guo, M.1    Tian, F.2    Wamboldt, Y.3    Alfano, J.R.4
  • 94
    • 33744457909 scopus 로고    scopus 로고
    • Yersinia YopJ acetylates and inhibits kinase activation by blocking phosphorylation
    • Mukherjee S, Keitany G, Li Y, Wang Y, Ball HL, et al. (2006) Yersinia YopJ acetylates and inhibits kinase activation by blocking phosphorylation. Science 312: 1211-1214.
    • (2006) Science , vol.312 , pp. 1211-1214
    • Mukherjee, S.1    Keitany, G.2    Li, Y.3    Wang, Y.4    Ball, H.L.5
  • 95
    • 84860894262 scopus 로고    scopus 로고
    • A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion
    • Lee AHY, Hurley B, Felsensteiner C, Yea C, Ckurshumova W, et al. (2012) A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion. PLoS Pathog 8: e1002523.
    • (2012) PLoS Pathog , vol.8
    • Lee, A.H.Y.1    Hurley, B.2    Felsensteiner, C.3    Yea, C.4    Ckurshumova, W.5
  • 96
    • 79952656785 scopus 로고    scopus 로고
    • Pseudomonas syringae type III effector HopZ1 targets a host enzyme to suppress isoflavone biosynthesis and promote infection in soybean
    • Zhou H, Lin J, Johnson A, Morgan RL, Zhong W, et al. (2011) Pseudomonas syringae type III effector HopZ1 targets a host enzyme to suppress isoflavone biosynthesis and promote infection in soybean. Cell Host Microbe 9: 177-186.
    • (2011) Cell Host Microbe , vol.9 , pp. 177-186
    • Zhou, H.1    Lin, J.2    Johnson, A.3    Morgan, R.L.4    Zhong, W.5
  • 97
    • 0034680096 scopus 로고    scopus 로고
    • Changing patterns of infectious disease
    • Cohen ML, (2000) Changing patterns of infectious disease. Nature 406: 762-767.
    • (2000) Nature , vol.406 , pp. 762-767
    • Cohen, M.L.1
  • 98
    • 0035843902 scopus 로고    scopus 로고
    • The foot-and-mouth epidemic in Great Britain: Pattern of spread and impact of interventions
    • Ferguson NM, Donnelly CA, Anderson RM, (2001) The foot-and-mouth epidemic in Great Britain: Pattern of spread and impact of interventions. Science 292: 1155-1160.
    • (2001) Science , vol.292 , pp. 1155-1160
    • Ferguson, N.M.1    Donnelly, C.A.2    Anderson, R.M.3
  • 99
    • 0030999292 scopus 로고    scopus 로고
    • Bovine spongiform encephalopathy (BSE): Causes and consequences of a common source epidemic
    • Nathanson N, Wilesmith J, Griot C, (1997) Bovine spongiform encephalopathy (BSE): Causes and consequences of a common source epidemic. Am J Epidemiol 145: 959-969.
    • (1997) Am J Epidemiol , vol.145 , pp. 959-969
    • Nathanson, N.1    Wilesmith, J.2    Griot, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.