메뉴 건너뛰기




Volumn 20, Issue 10, 2013, Pages 6751-6764

An evaluation of the applicability of microarrays for monitoring toxic algae in Irish coastal waters

Author keywords

Cell concentrations; Environmental monitoring; HABs; Hierarchical probes; Microarrays; Ribosomal RNA

Indexed keywords

MARINE TOXIN; SEA WATER;

EID: 84884700337     PISSN: 09441344     EISSN: 16147499     Source Type: Journal    
DOI: 10.1007/s11356-012-1294-1     Document Type: Article
Times cited : (21)

References (44)
  • 1
    • 33845575779 scopus 로고    scopus 로고
    • Raphidophyceae (Chadefaud Ex Silva) systematics and rapid identification: sequence analysis and real-time PCR assays
    • Bowers HA, Tomas C, Tengs T, Kempton JW, Lewitus AJ, Oldach DW (2006) Raphidophyceae (Chadefaud Ex Silva) systematics and rapid identification: sequence analysis and real-time PCR assays. J Phycol 42: 1333-1348.
    • (2006) J Phycol , vol.42 , pp. 1333-1348
    • Bowers, H.A.1    Tomas, C.2    Tengs, T.3    Kempton, J.W.4    Lewitus, A.J.5    Oldach, D.W.6
  • 3
    • 34247329382 scopus 로고    scopus 로고
    • Biosensors to detect marine toxins: assessing seafood safety
    • Campàs M, Prieto-Simón B, Marty JL (2007) Biosensors to detect marine toxins: assessing seafood safety. Talanta 72: 884-895.
    • (2007) Talanta , vol.72 , pp. 884-895
    • Campàs, M.1    Prieto-Simón, B.2    Marty, J.L.3
  • 4
    • 39049172041 scopus 로고    scopus 로고
    • Development of rRNA and rDNA-targeted probes for fluorescence in situ hybridization to detect Heterosigma akashiwo (Raphidophyceae)
    • Chen GF, Wang GC, Zhang CY, Zhang BY, Wang XK, Zhou BC (2008) Development of rRNA and rDNA-targeted probes for fluorescence in situ hybridization to detect Heterosigma akashiwo (Raphidophyceae). J Exp Mar Bio Ecol 355: 66-75.
    • (2008) J Exp Mar Bio Ecol , vol.355 , pp. 66-75
    • Chen, G.F.1    Wang, G.C.2    Zhang, C.Y.3    Zhang, B.Y.4    Wang, X.K.5    Zhou, B.C.6
  • 5
    • 52449084974 scopus 로고    scopus 로고
    • Molecular probe sets for the detection of toxic algae for use in sandwich hybridization formats
    • Diercks S, Metfies K, Medlin LK (2008) Molecular probe sets for the detection of toxic algae for use in sandwich hybridization formats. J Plankton Res 30: 439-448.
    • (2008) J Plankton Res , vol.30 , pp. 439-448
    • Diercks, S.1    Metfies, K.2    Medlin, L.K.3
  • 6
    • 84874956005 scopus 로고    scopus 로고
    • GPR-analyzer: A simple tool for quantitative analysis of hierarchical multispecies microarrays
    • doi: 10. 1007/s11356-012-1051-5
    • Dittami SM, Edvardsen B (2012) GPR-analyzer: a simple tool for quantitative analysis of hierarchical multispecies microarrays. Env Sci Poll Res. doi: 10. 1007/s11356-012-1051-5.
    • (2012) Env Sci Poll Res
    • Dittami, S.M.1    Edvardsen, B.2
  • 7
    • 34548408734 scopus 로고    scopus 로고
    • Hierarchical probes at various taxonomic levels in the Haptophyta and a new division level probe for the Heterokonta
    • Eller G, Töbe K, Medlin LK (2007) Hierarchical probes at various taxonomic levels in the Haptophyta and a new division level probe for the Heterokonta. J Plankton Res 29: 629-640.
    • (2007) J Plankton Res , vol.29 , pp. 629-640
    • Eller, G.1    Töbe, K.2    Medlin, L.K.3
  • 8
    • 0011334188 scopus 로고
    • Sinking rates of marine phytoplankton measured with a fluorometer
    • Eppley RW, Holmes RW, Strickland JDH (1967) Sinking rates of marine phytoplankton measured with a fluorometer. J Exp Mar Biol Ecol 1: 191-208.
    • (1967) J Exp Mar Biol Ecol , vol.1 , pp. 191-208
    • Eppley, R.W.1    Holmes, R.W.2    Strickland, J.D.H.3
  • 9
    • 6344256760 scopus 로고    scopus 로고
    • Microsatellite marker development and genetic variation in the toxic marine diatom Pseudo-nitzschia multiseries (Bacillariophyceae)
    • Evans KM, Bates SS, Medlin LK, Hayes PK (2004) Microsatellite marker development and genetic variation in the toxic marine diatom Pseudo-nitzschia multiseries (Bacillariophyceae). J Phycol 40: 911-920.
    • (2004) J Phycol , vol.40 , pp. 911-920
    • Evans, K.M.1    Bates, S.S.2    Medlin, L.K.3    Hayes, P.K.4
  • 11
    • 84884701795 scopus 로고    scopus 로고
    • GEOHAB, Gilbert P, Pitcher. G (eds) SCOR and IOC: Baltimore
    • GEOHAB (2001) GEOHAB Science Plan. Gilbert P, Pitcher. G (eds) SCOR and IOC: Baltimore. pp 87.
    • (2001) GEOHAB Science Plan , pp. 87
  • 12
    • 0036745575 scopus 로고    scopus 로고
    • Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium, Dinophysis and Karenia) from French coasts
    • Guillou L, Nezan E, Cueff V, Denn EEL, Cambon-Bonavita MA, Gentien P, Barbier G (2002) Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium, Dinophysis and Karenia) from French coasts. Protist 153: 223-238.
    • (2002) Protist , vol.153 , pp. 223-238
    • Guillou, L.1    Nezan, E.2    Cueff, V.3    Denn, E.E.L.4    Cambon-Bonavita, M.A.5    Gentien, P.6    Barbier, G.7
  • 15
    • 0038420739 scopus 로고    scopus 로고
    • The application of a molecular clock based on molecular sequences and the fossil record to explain biogeographic distributions within the Alexandrium tamarense species complex (Dinophyceae)
    • John U et al (2003) The application of a molecular clock based on molecular sequences and the fossil record to explain biogeographic distributions within the Alexandrium tamarense species complex (Dinophyceae). Mol Biol Evol 20: 1015-1027.
    • (2003) Mol Biol Evol , vol.20 , pp. 1015-1027
    • John, U.1
  • 18
    • 0030443210 scopus 로고    scopus 로고
    • Identification of the Class Prymnesiophyceae and the genus Phaeocystis with rRNA-targeted nucleic acid probes
    • Lange M, Guillou L, Vaulot D, Simon N, Amann RI, Ludwig W, Medlin LK (1996) Identification of the Class Prymnesiophyceae and the genus Phaeocystis with rRNA-targeted nucleic acid probes. J Phycol 32: 858-868.
    • (1996) J Phycol , vol.32 , pp. 858-868
    • Lange, M.1    Guillou, L.2    Vaulot, D.3    Simon, N.4    Amann, R.I.5    Ludwig, W.6    Medlin, L.K.7
  • 20
    • 0036271756 scopus 로고    scopus 로고
    • Paralytic shellfish poisoning toxins in France linked to a human-introduced strain of Alexandrium catenella from the western Pacific: evidence from DNA and toxin analysis
    • Lilly EL, Kulis DM, Gentien P, Anderson DM (2002) Paralytic shellfish poisoning toxins in France linked to a human-introduced strain of Alexandrium catenella from the western Pacific: evidence from DNA and toxin analysis. J Plankton Res 24: 443-452.
    • (2002) J Plankton Res , vol.24 , pp. 443-452
    • Lilly, E.L.1    Kulis, D.M.2    Gentien, P.3    Anderson, D.M.4
  • 21
    • 0027319339 scopus 로고
    • Application of rRNA-based probes for observing marine nanoplanktonic protists
    • Lim EL, Amaral LA, Caron DA, DeLong EF (1993) Application of rRNA-based probes for observing marine nanoplanktonic protists. Appl Environ Microbiol 59: 1647-1655.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1647-1655
    • Lim, E.L.1    Amaral, L.A.2    Caron, D.A.3    DeLong, E.F.4
  • 22
    • 63849137383 scopus 로고    scopus 로고
    • Unexpected genetic diversity among and within populations of the toxic Dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers
    • Masseret E, Grzebyk D, Nagai S, Genovesi B, Lasserre B, Laabir M, Collos Y, Vaquer A, Berrebi P (2009) Unexpected genetic diversity among and within populations of the toxic Dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers. Appl Environ Microbiol 75: 2037-2045.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2037-2045
    • Masseret, E.1    Grzebyk, D.2    Nagai, S.3    Genovesi, B.4    Lasserre, B.5    Laabir, M.6    Collos, Y.7    Vaquer, A.8    Berrebi, P.9
  • 23
    • 84857374315 scopus 로고    scopus 로고
    • Settlement bottle method for quantificative phytoplankton analysis
    • B. Karlson, C. Cusack, and E. Bresnan (Eds.), Paris: IOC of UNESCO
    • McDermott G, Raine R (2010) Settlement bottle method for quantificative phytoplankton analysis. In: Karlson B, Cusack C, Bresnan E (eds) Microscopic and molecular methods for quantitative phytoplankton analysis. IOC of UNESCO, Paris, pp 21-24.
    • (2010) Microscopic and Molecular Methods for Quantitative Phytoplankton Analysis , pp. 21-24
    • McDermott, G.1    Raine, R.2
  • 24
    • 43049100355 scopus 로고    scopus 로고
    • Feasibility of transferring FISH-probes to an 18S rRNA genephylochip and a mapping of signal intensity
    • Metfies K, Medlin LK (2008) Feasibility of transferring FISH-probes to an 18S rRNA genephylochip and a mapping of signal intensity. Appl Environ Microbiol 74: 2814-2821.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2814-2821
    • Metfies, K.1    Medlin, L.K.2
  • 25
    • 10044264088 scopus 로고    scopus 로고
    • Electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii with a DNA-biosensor
    • Metfies K, Huljic S, Lange M, Medlin LK (2005) Electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii with a DNA-biosensor. Biosens Bioelectron 20: 1349-1357.
    • (2005) Biosens Bioelectron , vol.20 , pp. 1349-1357
    • Metfies, K.1    Huljic, S.2    Lange, M.3    Medlin, L.K.4
  • 26
    • 10044298702 scopus 로고    scopus 로고
    • Development and application of LSU rRNA probes for Karenia brevis in the Gulf of mexico, USA
    • Mikulski CM, Morton SL, Doucette GJ (2005) Development and application of LSU rRNA probes for Karenia brevis in the Gulf of mexico, USA. Harmful Algae 4: 49-60.
    • (2005) Harmful Algae , vol.4 , pp. 49-60
    • Mikulski, C.M.1    Morton, S.L.2    Doucette, G.J.3
  • 27
    • 0031805455 scopus 로고    scopus 로고
    • Identification and enumeration of cultured and wild Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization
    • Miller PE, Scholin CA (1998) Identification and enumeration of cultured and wild Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization. J Phycol 34: 371-382.
    • (1998) J Phycol , vol.34 , pp. 371-382
    • Miller, P.E.1    Scholin, C.A.2
  • 28
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607-610.
    • (2001) Nature , vol.409 , pp. 607-610
    • Moon-Van der staay, S.Y.1    De Wachter, R.2    Vaulot, D.3
  • 30
    • 0035732293 scopus 로고    scopus 로고
    • A satellite and field portrait of a Karenia mikimotoi bloom off the south coast of Ireland, August, 1998
    • Raine R, O'Boyle S, O'Higgins T, White M, Patching J, Cahill B, McMahon T (2001) A satellite and field portrait of a Karenia mikimotoi bloom off the south coast of Ireland, August, 1998. Hydrobiologia 465: 187-193.
    • (2001) Hydrobiologia , vol.465 , pp. 187-193
    • Raine, R.1    O'Boyle, S.2    O'Higgins, T.3    White, M.4    Patching, J.5    Cahill, B.6    McMahon, T.7
  • 31
    • 77958150775 scopus 로고    scopus 로고
    • A simple short range model for the prediction of harmful algal events in the bays of southwestern Ireland
    • Raine R, McDermott G, Silke J, Lyons K, Nolan G, Cusack C (2010) A simple short range model for the prediction of harmful algal events in the bays of southwestern Ireland. J Mar Sys 83: 150-157.
    • (2010) J Mar Sys , vol.83 , pp. 150-157
    • Raine, R.1    McDermott, G.2    Silke, J.3    Lyons, K.4    Nolan, G.5    Cusack, C.6
  • 32
    • 0000896288 scopus 로고    scopus 로고
    • Detection and quantification of HAB species using antibody and DNA probes: Progress to date and future research objectives
    • In: Regura, B., Blanko, J., Fernandez, M. L. and Wyatt, T
    • Scholin CA and Anderson DM (1998) Detection and quantification of HAB species using antibody and DNA probes: progress to date and future research objectives. In: Regura, B., Blanko, J., Fernandez, M. L. and Wyatt, T (eds). Harmful algae. Xunta de Galicia and Intergovernmental Ocenaographic Commission of UNESCO. pp. 253-257.
    • (1998) Harmful Algae. Xunta De Galicia and Intergovernmental Ocenaographic Commission of UNESCO , pp. 253-257
    • Scholin, C.A.1    Anderson, D.M.2
  • 33
    • 33746499241 scopus 로고    scopus 로고
    • Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes
    • Scholin CA, Miller P, Buck K, Chavez F, Harris P, Haydock P, Howard J, Cangelosi G (1997) Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes. Limnol Oceanogr 42: 1265-72.
    • (1997) Limnol Oceanogr , vol.42 , pp. 1265-1272
    • Scholin, C.A.1    Miller, P.2    Buck, K.3    Chavez, F.4    Harris, P.5    Haydock, P.6    Howard, J.7    Cangelosi, G.8
  • 34
    • 77958163429 scopus 로고    scopus 로고
    • Karenia mikimotoi: an exceptional dinoflagellate bloom in western Irish waters, Summer 2005
    • Galway, Ireland: Marine Institute
    • Silke J, O'Beirn F, Cronin M (2005) Karenia mikimotoi: an exceptional dinoflagellate bloom in western Irish waters, Summer 2005. In: Marine Environment and Health Series 21. Marine Institute, Galway, Ireland.
    • (2005) Marine Environment and Health Series 21
    • Silke, J.1    O'Beirn, F.2    Cronin, M.3
  • 35
    • 0031460403 scopus 로고    scopus 로고
    • The Identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae
    • Simon N, Brenner J, Edvardsen B, Medlin LK (1997) The Identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae. Eur J Phycol 32: 393-401.
    • (1997) Eur J Phycol , vol.32 , pp. 393-401
    • Simon, N.1    Brenner, J.2    Edvardsen, B.3    Medlin, L.K.4
  • 36
  • 37
    • 0002644592 scopus 로고
    • Preservation and storage
    • A. Sournia (Ed.), Paris: UNESCO
    • Throndsen J (1978) Preservation and storage. In: Sournia A (ed) Phytoplankton manual. UNESCO, Paris, pp 69-74.
    • (1978) Phytoplankton Manual , pp. 69-74
    • Throndsen, J.1
  • 38
    • 33745698211 scopus 로고    scopus 로고
    • Automated detection and enumeration for toxic algae by solid-phase cytometry and the introduction of a new probe for Prymnesium parvum (Haptophyta: prymnesiophyceae)
    • Töbe K, Eller G, Medlin LK (2006) Automated detection and enumeration for toxic algae by solid-phase cytometry and the introduction of a new probe for Prymnesium parvum (Haptophyta: prymnesiophyceae). J Plankton Res 28: 643-657.
    • (2006) J Plankton Res , vol.28 , pp. 643-657
    • Töbe, K.1    Eller, G.2    Medlin, L.K.3
  • 39
    • 34249659502 scopus 로고    scopus 로고
    • Characterisation of non-toxic and toxin producing populations of Alexandrium minutum (Dinophyceae) in Irish coastal waters
    • Touzet N, Franco JM, Raine R (2007) Characterisation of non-toxic and toxin producing populations of Alexandrium minutum (Dinophyceae) in Irish coastal waters. Appl Environ Microbiol 73: 3333-3342.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3333-3342
    • Touzet, N.1    Franco, J.M.2    Raine, R.3
  • 40
    • 58149125400 scopus 로고    scopus 로고
    • Evaluation of taxa-specific real-time PCR, whole cell FISH and morphotaxonomy analyses for the detection and quantification of the toxic microalgae Alexandrium minutum (Dinophyceae), Global Clade ribotype
    • Touzet N, Keady E, Raine R, Maher M (2009) Evaluation of taxa-specific real-time PCR, whole cell FISH and morphotaxonomy analyses for the detection and quantification of the toxic microalgae Alexandrium minutum (Dinophyceae), Global Clade ribotype. FEMS Microbiol Ecol 67: 329-341.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 329-341
    • Touzet, N.1    Keady, E.2    Raine, R.3    Maher, M.4
  • 41
    • 77954861079 scopus 로고    scopus 로고
    • Co-occurrence of the West European (Gr. III) and North American (Gr. I) ribotypes of Alexandrium tamarense (Dinophyceae) in Shetland, Scotland
    • Touzet N, Davidson K, Pete R, Flanagan K, McCoy GR, Amzil Z, Maher M, Chapelle A, Raine R (2010) Co-occurrence of the West European (Gr. III) and North American (Gr. I) ribotypes of Alexandrium tamarense (Dinophyceae) in Shetland, Scotland. Protist 161: 370-384.
    • (2010) Protist , vol.161 , pp. 370-384
    • Touzet, N.1    Davidson, K.2    Pete, R.3    Flanagan, K.4    McCoy, G.R.5    Amzil, Z.6    Maher, M.7    Chapelle, A.8    Raine, R.9
  • 42
    • 79952659589 scopus 로고    scopus 로고
    • Summer dynamics of Alexandrium ostenfeldii (Dinophyceae) and spirolide toxins in Cork Harbour, Ireland
    • Touzet N, Lacaze JP, Maher M, Turrel E, Raine R (2011) Summer dynamics of Alexandrium ostenfeldii (Dinophyceae) and spirolide toxins in Cork Harbour, Ireland. Mar Ecol Prog Ser 425: 21-33.
    • (2011) Mar Ecol Prog Ser , vol.425 , pp. 21-33
    • Touzet, N.1    Lacaze, J.P.2    Maher, M.3    Turrel, E.4    Raine, R.5
  • 43
    • 0035667624 scopus 로고    scopus 로고
    • Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes
    • Tyrrell JV, Bergquist PR, Bergquist PL, Scholin CA (2001) Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycol 40: 457-467.
    • (2001) Phycol , vol.40 , pp. 457-467
    • Tyrrell, J.V.1    Bergquist, P.R.2    Bergquist, P.L.3    Scholin, C.A.4
  • 44
    • 70849090621 scopus 로고    scopus 로고
    • Use of biosensors as alternatives to current regulatory methods for marine biotoxins
    • Vilariño N, Fonfría ES, Louzao C, Botana M (2009) Use of biosensors as alternatives to current regulatory methods for marine biotoxins. Sensors 9: 9414-9443.
    • (2009) Sensors , vol.9 , pp. 9414-9443
    • Vilariño, N.1    Fonfría, E.S.2    Louzao, C.3    Botana, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.