-
1
-
-
79961183224
-
Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing
-
Nakamura S, Nakaya T, Iida T, (2011) Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing. Exp Biol Med (Maywood) 236: 968-971.
-
(2011)
Exp Biol Med (Maywood)
, vol.236
, pp. 968-971
-
-
Nakamura, S.1
Nakaya, T.2
Iida, T.3
-
2
-
-
79952701966
-
The vaginal microbiome: new information about genital tract flora using molecular based techniques
-
Lamont RF, Sobel JD, Akins RA, Hassan SS, Chaiworapongsa T, et al. (2011) The vaginal microbiome: new information about genital tract flora using molecular based techniques. BJOG 118: 533-549.
-
(2011)
BJOG
, vol.118
, pp. 533-549
-
-
Lamont, R.F.1
Sobel, J.D.2
Akins, R.A.3
Hassan, S.S.4
Chaiworapongsa, T.5
-
4
-
-
0026088584
-
Reliability of diagnosing bacterial vaginosis is improved by a standardized method of gram stain interpretation
-
Nugent RP, Krohn MA, Hillier SL, (1991) Reliability of diagnosing bacterial vaginosis is improved by a standardized method of gram stain interpretation. J Clin Microbiol 29: 297-301.
-
(1991)
J Clin Microbiol
, vol.29
, pp. 297-301
-
-
Nugent, R.P.1
Krohn, M.A.2
Hillier, S.L.3
-
5
-
-
0020665888
-
Nonspecific vaginitis. Diagnostic criteria and microbial and epidemiologic associations
-
Amsel R, Totten PA, Spiegel CA, Chen KC, Eschenbach D, et al. (1983) Nonspecific vaginitis. Diagnostic criteria and microbial and epidemiologic associations. Am J Med 74: 14-22.
-
(1983)
Am J Med
, vol.74
, pp. 14-22
-
-
Amsel, R.1
Totten, P.A.2
Spiegel, C.A.3
Chen, K.C.4
Eschenbach, D.5
-
6
-
-
84861209251
-
Effect of periodontal pathogens on the metatranscriptome of a healthy multispecies biofilm model
-
Frias-Lopez J, Duran-Pinedo A, (2012) Effect of periodontal pathogens on the metatranscriptome of a healthy multispecies biofilm model. J Bacteriol 194: 2082-2095.
-
(2012)
J Bacteriol
, vol.194
, pp. 2082-2095
-
-
Frias-Lopez, J.1
Duran-Pinedo, A.2
-
7
-
-
79952401369
-
Metatranscriptomic approach to analyze the functional human gut microbiota
-
Gosalbes MJ, Durban A, Pignatelli M, Abellan JJ, Jimenez-Hernandez N, et al. (2011) Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One 6: e17447.
-
(2011)
PLoS One
, vol.6
-
-
Gosalbes, M.J.1
Durban, A.2
Pignatelli, M.3
Abellan, J.J.4
Jimenez-Hernandez, N.5
-
8
-
-
84876049369
-
Composition of the Vaginal Microbiota in Women of Reproductive Age - Sensitive and Specific Molecular Diagnosis of Bacterial Vaginosis Is Possible?
-
Shipitsyna E, Roos A, Datcu R, Hallen A, Fredlund H, et al. (2013) Composition of the Vaginal Microbiota in Women of Reproductive Age- Sensitive and Specific Molecular Diagnosis of Bacterial Vaginosis Is Possible? PLoS One 8.
-
(2013)
PLoS One
, vol.8
-
-
Shipitsyna, E.1
Roos, A.2
Datcu, R.3
Hallen, A.4
Fredlund, H.5
-
9
-
-
0036713497
-
Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA
-
Iscove NN, Barbara M, Gu M, Gibson M, Modi C, et al. (2002) Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. Nat Biotechnol 20: 940-943.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 940-943
-
-
Iscove, N.N.1
Barbara, M.2
Gu, M.3
Gibson, M.4
Modi, C.5
-
10
-
-
33645464302
-
Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays
-
Lin B, Wang Z, Vora GJ, Thornton JA, Schnur JM, et al. (2006) Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays. Genome Res 16: 527-535.
-
(2006)
Genome Res
, vol.16
, pp. 527-535
-
-
Lin, B.1
Wang, Z.2
Vora, G.J.3
Thornton, J.A.4
Schnur, J.M.5
-
11
-
-
21244449920
-
Higher-risk behavioral practices associated with bacterial vaginosis compared with vaginal candidiasis
-
Bradshaw CS, Morton AN, Garland SM, Morris MB, Moss LM, et al. (2005) Higher-risk behavioral practices associated with bacterial vaginosis compared with vaginal candidiasis. Obstet Gynecol 106: 105-114.
-
(2005)
Obstet Gynecol
, vol.106
, pp. 105-114
-
-
Bradshaw, C.S.1
Morton, A.N.2
Garland, S.M.3
Morris, M.B.4
Moss, L.M.5
-
12
-
-
60249088288
-
Simultaneous extraction of high-quality RNA and DNA from small tissue samples
-
Triant DA, Whitehead A, (2009) Simultaneous extraction of high-quality RNA and DNA from small tissue samples. Journal of Heredity 100: 246-250.
-
(2009)
Journal of Heredity
, vol.100
, pp. 246-250
-
-
Triant, D.A.1
Whitehead, A.2
-
13
-
-
0028897116
-
Substitution of chloroform by bromo-chloropropane in the single-step method of RNA isolation
-
Chomczynski P, Mackey K, (1995) Substitution of chloroform by bromo-chloropropane in the single-step method of RNA isolation. Anal Biochem 225: 163-164.
-
(1995)
Anal Biochem
, vol.225
, pp. 163-164
-
-
Chomczynski, P.1
Mackey, K.2
-
14
-
-
0027169767
-
A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples
-
Chomczynski P (1993) A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques 15: 532-534, 536-537.
-
(1993)
Biotechniques
, vol.15
-
-
Chomczynski, P.1
-
15
-
-
79952750340
-
Vaginal microbiome of reproductive-age women
-
Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, et al. (2010) Vaginal microbiome of reproductive-age women. Proc Natl Acad Sci U S A 108Suppl 1: 4680-4687.
-
(2010)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4680-4687
-
-
Ravel, J.1
Gajer, P.2
Abdo, Z.3
Schneider, G.M.4
Koenig, S.S.5
-
16
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R, (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
17
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server- a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
18
-
-
77957168527
-
Study of inter- and intra-individual variations in the salivary microbiota
-
Lazarevic V, Whiteson K, Hernandez D, Francois P, Schrenzel J, (2010) Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics 11: 523.
-
(2010)
BMC Genomics
, vol.11
, pp. 523
-
-
Lazarevic, V.1
Whiteson, K.2
Hernandez, D.3
Francois, P.4
Schrenzel, J.5
-
20
-
-
62749193862
-
Changes in vaginal bacterial concentrations with intravaginal metronidazole therapy for bacterial vaginosis as assessed by quantitative PCR
-
Fredricks DN, Fiedler TL, Thomas KK, Mitchell CM, Marrazzo JM, (2009) Changes in vaginal bacterial concentrations with intravaginal metronidazole therapy for bacterial vaginosis as assessed by quantitative PCR. J Clin Microbiol 47: 721-726.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 721-726
-
-
Fredricks, D.N.1
Fiedler, T.L.2
Thomas, K.K.3
Mitchell, C.M.4
Marrazzo, J.M.5
-
21
-
-
0037073556
-
Detection of bacterial vaginosis-related organisms by real-time PCR for Lactobacilli, Gardnerella vaginalis and Mycoplasma hominis
-
Zariffard MR, Saifuddin M, Sha BE, Spear GT, (2002) Detection of bacterial vaginosis-related organisms by real-time PCR for Lactobacilli, Gardnerella vaginalis and Mycoplasma hominis. FEMS Immunol Med Microbiol 34: 277-281.
-
(2002)
FEMS Immunol Med Microbiol
, vol.34
, pp. 277-281
-
-
Zariffard, M.R.1
Saifuddin, M.2
Sha, B.E.3
Spear, G.T.4
-
22
-
-
65549150087
-
Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR
-
Furet JP, Firmesse O, Gourmelon M, Bridonneau C, Tap J, et al. (2009) Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR. FEMS Microbiol Ecol 68: 351-362.
-
(2009)
FEMS Microbiol Ecol
, vol.68
, pp. 351-362
-
-
Furet, J.P.1
Firmesse, O.2
Gourmelon, M.3
Bridonneau, C.4
Tap, J.5
-
23
-
-
79953744103
-
Diversity of cervicovaginal microbiota associated with female lower genital tract infections
-
Ling Z, Liu X, Chen X, Zhu H, Nelson KE, et al. (2011) Diversity of cervicovaginal microbiota associated with female lower genital tract infections. Microb Ecol 61: 704-714.
-
(2011)
Microb Ecol
, vol.61
, pp. 704-714
-
-
Ling, Z.1
Liu, X.2
Chen, X.3
Zhu, H.4
Nelson, K.E.5
-
24
-
-
0031596222
-
Inverse association of H2O2-producing lactobacilli and vaginal Escherichia coli colonization in women with recurrent urinary tract infections
-
Gupta K, Stapleton AE, Hooton TM, Roberts PL, Fennell CL, et al. (1998) Inverse association of H2O2-producing lactobacilli and vaginal Escherichia coli colonization in women with recurrent urinary tract infections. J Infect Dis 178: 446-450.
-
(1998)
J Infect Dis
, vol.178
, pp. 446-450
-
-
Gupta, K.1
Stapleton, A.E.2
Hooton, T.M.3
Roberts, P.L.4
Fennell, C.L.5
-
25
-
-
0036193670
-
Broad-range bacterial detection and the analysis of unexplained death and critical illness
-
Nikkari S, Lopez FA, Lepp PW, Cieslak PR, Ladd-Wilson S, et al. (2002) Broad-range bacterial detection and the analysis of unexplained death and critical illness. Emerg Infect Dis 8: 188-194.
-
(2002)
Emerg Infect Dis
, vol.8
, pp. 188-194
-
-
Nikkari, S.1
Lopez, F.A.2
Lepp, P.W.3
Cieslak, P.R.4
Ladd-Wilson, S.5
-
26
-
-
84858308626
-
-
StataCorp,College Station, TX: StataCorp LP
-
StataCorp (2011) Stata Statistical Software: Release 12. College Station, TX: StataCorp LP.
-
(2011)
Stata Statistical Software: Release 12
-
-
-
27
-
-
84862501725
-
Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria
-
Srinivasan S, Hoffman NG, Morgan MT, Matsen FA, Fiedler TL, et al. (2012) Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria. PLoS One 7: e37818.
-
(2012)
PLoS One
, vol.7
-
-
Srinivasan, S.1
Hoffman, N.G.2
Morgan, M.T.3
Matsen, F.A.4
Fiedler, T.L.5
-
28
-
-
0031016837
-
Evidence for a commensal, symbiotic relationship between Gardnerella vaginalis and Prevotella bivia involving ammonia: potential significance for bacterial vaginosis
-
Pybus V, Onderdonk AB, (1997) Evidence for a commensal, symbiotic relationship between Gardnerella vaginalis and Prevotella bivia involving ammonia: potential significance for bacterial vaginosis. J Infect Dis 175: 406-413.
-
(1997)
J Infect Dis
, vol.175
, pp. 406-413
-
-
Pybus, V.1
Onderdonk, A.B.2
-
29
-
-
40449096712
-
Prevotella amnii sp. nov., isolated from human amniotic fluid
-
Lawson PA, Moore E, Falsen E, (2008) Prevotella amnii sp. nov., isolated from human amniotic fluid. Int J Syst Evol Microbiol 58: 89-92.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 89-92
-
-
Lawson, P.A.1
Moore, E.2
Falsen, E.3
-
30
-
-
77956490376
-
Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis
-
Ling Z, Kong J, Liu F, Zhu H, Chen X, et al. (2010) Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis. BMC Genomics 11: 488.
-
(2010)
BMC Genomics
, vol.11
, pp. 488
-
-
Ling, Z.1
Kong, J.2
Liu, F.3
Zhu, H.4
Chen, X.5
-
31
-
-
80053938502
-
The origin of Fusobacterium nucleatum involved in intra-amniotic infection and preterm birth
-
Gauthier S, Tetu A, Himaya E, Morand M, Chandad F, et al. (2011) The origin of Fusobacterium nucleatum involved in intra-amniotic infection and preterm birth. J Matern Fetal Neonatal Med 24: 1329-1332.
-
(2011)
J Matern Fetal Neonatal Med
, vol.24
, pp. 1329-1332
-
-
Gauthier, S.1
Tetu, A.2
Himaya, E.3
Morand, M.4
Chandad, F.5
-
32
-
-
0028181434
-
Abnormal bacterial colonisation of the genital tract and subsequent preterm delivery and late miscarriage
-
Hay PE, Lamont RF, Taylor-Robinson D, Morgan DJ, Ison C, et al. (1994) Abnormal bacterial colonisation of the genital tract and subsequent preterm delivery and late miscarriage. BMJ 308: 295-298.
-
(1994)
BMJ
, vol.308
, pp. 295-298
-
-
Hay, P.E.1
Lamont, R.F.2
Taylor-Robinson, D.3
Morgan, D.J.4
Ison, C.5
-
33
-
-
84867979937
-
Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease
-
Nadkarni MA, Browne GV, Chhour KL, Byun R, Nguyen KA, et al. (2012) Pattern of distribution of Prevotella species/phylotypes associated with healthy gingiva and periodontal disease. Eur J Clin Microbiol Infect Dis 31: 2989-2999.
-
(2012)
Eur J Clin Microbiol Infect Dis
, vol.31
, pp. 2989-2999
-
-
Nadkarni, M.A.1
Browne, G.V.2
Chhour, K.L.3
Byun, R.4
Nguyen, K.A.5
-
34
-
-
23744438967
-
Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis
-
Kumar PS, Griffen AL, Moeschberger ML, Leys EJ, (2005) Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis. J Clin Microbiol 43: 3944-3955.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3944-3955
-
-
Kumar, P.S.1
Griffen, A.L.2
Moeschberger, M.L.3
Leys, E.J.4
-
35
-
-
33947316167
-
The detection of eight putative periodontal pathogens in adult and rapidly progressive periodontitis patients: an institutional study
-
Joshi VM, Vandana KL, (2007) The detection of eight putative periodontal pathogens in adult and rapidly progressive periodontitis patients: an institutional study. Indian J Dent Res 18: 6-10.
-
(2007)
Indian J Dent Res
, vol.18
, pp. 6-10
-
-
Joshi, V.M.1
Vandana, K.L.2
-
37
-
-
77957689489
-
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
-
He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, et al. (2010) Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat Methods 7: 807-812.
-
(2010)
Nat Methods
, vol.7
, pp. 807-812
-
-
He, S.1
Wurtzel, O.2
Singh, K.3
Froula, J.L.4
Yilmaz, S.5
-
38
-
-
84860370749
-
Coverage Evaluation of Universal Bacterial Primers using the Metagenomic Datasets
-
Mao DP, Zhou Q, Chen CY, Quan ZX, (2012) Coverage Evaluation of Universal Bacterial Primers using the Metagenomic Datasets. BMC Microbiol 12: 66.
-
(2012)
BMC Microbiol
, vol.12
, pp. 66
-
-
Mao, D.P.1
Zhou, Q.2
Chen, C.Y.3
Quan, Z.X.4
-
39
-
-
84866150939
-
Capturing Greater 16S rRNA Gene Sequence Diversity within the Domain Bacteria
-
Winsley T, van Dorst JM, Brown MV, Ferrari BC, (2012) Capturing Greater 16S rRNA Gene Sequence Diversity within the Domain Bacteria. Appl Environ Microbiol 78: 5938-5941.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5938-5941
-
-
Winsley, T.1
van Dorst, J.M.2
Brown, M.V.3
Ferrari, B.C.4
-
40
-
-
84859014125
-
Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing
-
Sim K, Cox MJ, Wopereis H, Martin R, Knol J, et al. (2012) Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing. PLoS One 7: e32543.
-
(2012)
PLoS One
, vol.7
-
-
Sim, K.1
Cox, M.J.2
Wopereis, H.3
Martin, R.4
Knol, J.5
-
41
-
-
84862631902
-
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
-
Soergel DAW, Dey N, Knight R, Brenner SE, (2012) Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences. ISME Journal 6: 1440-1444.
-
(2012)
ISME Journal
, vol.6
, pp. 1440-1444
-
-
Soergel, D.A.W.1
Dey, N.2
Knight, R.3
Brenner, S.E.4
|