-
2
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King MC, Wilson AC, (1975) Evolution at two levels in humans and chimpanzees. Science 188: 107.
-
(1975)
Science
, vol.188
, pp. 107
-
-
King, M.C.1
Wilson, A.C.2
-
4
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
Hoekstra HE, Coyne JA, (2007) The locus of evolution: Evo devo and the genetics of adaptation. Evolution 61: 995-1016.
-
(2007)
Evolution
, vol.61
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
5
-
-
84880076219
-
Gene expression drives local adaptation in humans
-
Fraser HB, (2013) Gene expression drives local adaptation in humans. Genome Research 23: 1089.
-
(2013)
Genome Research
, vol.23
, pp. 1089
-
-
Fraser, H.B.1
-
6
-
-
84867185913
-
Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity
-
Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, et al. (2012) Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity. Genome Research 22: 1930.
-
(2012)
Genome Research
, vol.22
, pp. 1930
-
-
Fraser, H.B.1
Levy, S.2
Chavan, A.3
Shah, H.B.4
Perez, J.C.5
-
7
-
-
79953744169
-
Systematic detection of polygenic cis-regulatory evolution
-
Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, et al. (2011) Systematic detection of polygenic cis-regulatory evolution. PLoS Genetics 7: e1002023.
-
(2011)
PLoS Genetics
, vol.7
-
-
Fraser, H.B.1
Babak, T.2
Tsang, J.3
Zhou, Y.4
Zhang, B.5
-
8
-
-
77649242421
-
Evidence for widespread adaptive evolution of gene expression in budding yeast
-
Fraser HB, Moses A, Schadt EE, (2010) Evidence for widespread adaptive evolution of gene expression in budding yeast. Proc Natl Acad Sci USA 107: 2997.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 2997
-
-
Fraser, H.B.1
Moses, A.2
Schadt, E.E.3
-
9
-
-
79956140624
-
Genome-wide approaches to the study of adaptive gene expression evolution
-
Fraser HB, (2011) Genome-wide approaches to the study of adaptive gene expression evolution. Bioessays 33: 469.
-
(2011)
Bioessays
, vol.33
, pp. 469
-
-
Fraser, H.B.1
-
10
-
-
84863562763
-
Evolution of a membrane protein regulon in Saccharomyces
-
Martin HC, Roop JI, Schraiber JG, Hsu TY, Brem RB, (2012) Evolution of a membrane protein regulon in Saccharomyces. Mol Biol Evol 29: 1747-56.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1747-1756
-
-
Martin, H.C.1
Roop, J.I.2
Schraiber, J.G.3
Hsu, T.Y.4
Brem, R.B.5
-
11
-
-
65549086559
-
A yeast hybrid provides insight into the evolution of gene expression regulation
-
Tirosh I, Reikhav S, Levy AA, Barkai N, (2009) A yeast hybrid provides insight into the evolution of gene expression regulation. Science 324: 659-62.
-
(2009)
Science
, vol.324
, pp. 659-662
-
-
Tirosh, I.1
Reikhav, S.2
Levy, A.A.3
Barkai, N.4
-
12
-
-
56849103052
-
Evolution acts on enhancer organization to fine-tune gradient threshold readouts
-
Crocker J, Tamori Y, Erives A, (2008) Evolution acts on enhancer organization to fine-tune gradient threshold readouts. PLoS Biol 6: e263.
-
(2008)
PLoS Biol
, vol.6
-
-
Crocker, J.1
Tamori, Y.2
Erives, A.3
-
13
-
-
74549118236
-
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
-
Chan YF, Marks ME, Jones FC, Villarreal G Jr, Shapiro MD, et al. (2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327: 302.
-
(2010)
Science
, vol.327
, pp. 302
-
-
Chan, Y.F.1
Marks, M.E.2
Jones, F.C.3
Villarreal Jr., G.4
Shapiro, M.D.5
-
14
-
-
72949110371
-
Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population
-
Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB, (2009) Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science 326: 1663.
-
(2009)
Science
, vol.326
, pp. 1663
-
-
Rebeiz, M.1
Pool, J.E.2
Kassner, V.A.3
Aquadro, C.F.4
Carroll, S.B.5
-
15
-
-
79959825697
-
Morphological evolution caused by many subtle-effect substitutions in regulatory DNA
-
Frankel N, Erezyilmaz DF, McGregor AP, Wang S, Payre F, et al. (2011) Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. Nature 474: 598-603.
-
(2011)
Nature
, vol.474
, pp. 598-603
-
-
Frankel, N.1
Erezyilmaz, D.F.2
McGregor, A.P.3
Wang, S.4
Payre, F.5
-
16
-
-
39749184167
-
The evolution of gene regulation underlies a morphological difference between two Drosophila sister species
-
Jeong S, Rebeiz M, Andolfatto P, Werner T, True J, et al. (2008) The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. Cell 132: 783-93.
-
(2008)
Cell
, vol.132
, pp. 783-793
-
-
Jeong, S.1
Rebeiz, M.2
Andolfatto, P.3
Werner, T.4
True, J.5
-
17
-
-
58849139595
-
Genetic interactions between transcription factors cause natural variation in yeast
-
Gerke J, Lorenz K, Cohen B, (2009) Genetic interactions between transcription factors cause natural variation in yeast. Science 323: 498-501.
-
(2009)
Science
, vol.323
, pp. 498-501
-
-
Gerke, J.1
Lorenz, K.2
Cohen, B.3
-
18
-
-
84874963219
-
Adaptive evolution of multiple traits through multiple mutations at a single gene
-
Linnen CR, Poh YP, Peterson BK, Barrett RD, Larson JG, et al. (2013) Adaptive evolution of multiple traits through multiple mutations at a single gene. Science 339: 1312-6.
-
(2013)
Science
, vol.339
, pp. 1312-1316
-
-
Linnen, C.R.1
Poh, Y.P.2
Peterson, B.K.3
Barrett, R.D.4
Larson, J.G.5
-
19
-
-
73749084037
-
Regulation of multidrug resistance in pathogenic fungi
-
Morschhäuser J, (2010) Regulation of multidrug resistance in pathogenic fungi. Fungal Genet and Biol 47: 94-106.
-
(2010)
Fungal Genet and Biol
, vol.47
, pp. 94-106
-
-
Morschhäuser, J.1
-
20
-
-
0042424651
-
Disruption of ergosterol biosynthesis confers resistance to amphotericin B in Candida lusitaniae
-
Young LY, Hull CM, Heitman J, (2003) Disruption of ergosterol biosynthesis confers resistance to amphotericin B in Candida lusitaniae. Antimicrob Agents Chemother 47: 2717-24.
-
(2003)
Antimicrob Agents Chemother
, vol.47
, pp. 2717-2724
-
-
Young, L.Y.1
Hull, C.M.2
Heitman, J.3
-
21
-
-
0027956453
-
Resistance to amphotericin B associated with defective sterol Δ87 isomerase in a Cryptococcus neoformans strain from an AIDS patient
-
Kelly SL, Lamb DC, Taylor M, Corran AJ, Baldwin BC, et al. (1994) Resistance to amphotericin B associated with defective sterol Δ87 isomerase in a Cryptococcus neoformans strain from an AIDS patient. FEMS Microbiology Letters 122: 39-42.
-
(1994)
FEMS Microbiology Letters
, vol.122
, pp. 39-42
-
-
Kelly, S.L.1
Lamb, D.C.2
Taylor, M.3
Corran, A.J.4
Baldwin, B.C.5
-
22
-
-
13444306165
-
The landscape of genetic complexity across 5,700 gene expression traits in yeast
-
Brem RB, Kruglyak L, (2005) The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proc Natl Acad Sci USA 102: 1572-1577.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 1572-1577
-
-
Brem, R.B.1
Kruglyak, L.2
-
23
-
-
84857206944
-
Using pyrosequencing to measure allele-specific mRNA abundance and infer the effects of cis- and trans-regulatory differences
-
Wittkopp PJ, (2011) Using pyrosequencing to measure allele-specific mRNA abundance and infer the effects of cis- and trans-regulatory differences. Methods Mol Biol 772: 297-317.
-
(2011)
Methods Mol Biol
, vol.772
, pp. 297-317
-
-
Wittkopp, P.J.1
-
24
-
-
24344479212
-
Erg28p is a key protein in the yeast sterol biosynthetic enzyme complex
-
Mo C, Bard M, (2005) Erg28p is a key protein in the yeast sterol biosynthetic enzyme complex. J Lipid Res 46: 1991-8.
-
(2005)
J Lipid Res
, vol.46
, pp. 1991-1998
-
-
Mo, C.1
Bard, M.2
-
25
-
-
7444226466
-
The ERG28-encoded protein, Erg28p, interacts with both the sterol C-4 demethylation enzyme complex as well as the late biosynthetic protein, the C-24 sterol methyltransferase (Erg6p)
-
Mo C, Valachovic M, Bard M, (2004) The ERG28-encoded protein, Erg28p, interacts with both the sterol C-4 demethylation enzyme complex as well as the late biosynthetic protein, the C-24 sterol methyltransferase (Erg6p). Biochim Biophys Acta 1686: 30-6.
-
(2004)
Biochim Biophys Acta
, vol.1686
, pp. 30-36
-
-
Mo, C.1
Valachovic, M.2
Bard, M.3
-
26
-
-
0035137828
-
A novel gene conserved from yeast to humans is involved in sterol biosynthesis
-
Gachotte D, Eckstein J, Barbuch R, Hughes T, Roberts C, et al. (2001) A novel gene conserved from yeast to humans is involved in sterol biosynthesis. J Lipid Res 42: 150-4.
-
(2001)
J Lipid Res
, vol.42
, pp. 150-154
-
-
Gachotte, D.1
Eckstein, J.2
Barbuch, R.3
Hughes, T.4
Roberts, C.5
-
27
-
-
79951493843
-
A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
-
Venters BJ, Wachi S, Mavrich TN, Andersen BE, Jena P, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41: 480-92.
-
(2011)
Mol Cell
, vol.41
, pp. 480-492
-
-
Venters, B.J.1
Wachi, S.2
Mavrich, T.N.3
Andersen, B.E.4
Jena, P.5
-
28
-
-
33745225170
-
The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast
-
Storici F, Resnick MA, (2006) The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods Enzymol 409: 329-45.
-
(2006)
Methods Enzymol
, vol.409
, pp. 329-345
-
-
Storici, F.1
Resnick, M.A.2
-
29
-
-
84862984796
-
Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast
-
Raveh-Sadka T, Levo M, Shabi U, Shany B, Keren L, et al. (2012) Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast. Nat Genet 44: 743-50.
-
(2012)
Nat Genet
, vol.44
, pp. 743-750
-
-
Raveh-Sadka, T.1
Levo, M.2
Shabi, U.3
Shany, B.4
Keren, L.5
-
30
-
-
77952379239
-
Natural single-nucleosome epi-polymorphisms in yeast
-
Nagarajan M, Veyrieras JB, de Dieuleveult M, Bottin H, Fehrmann S, et al. (2010) Natural single-nucleosome epi-polymorphisms in yeast. PLoS Genet 6: e1000913.
-
(2010)
PLoS Genet
, vol.6
-
-
Nagarajan, M.1
Veyrieras, J.B.2
de Dieuleveult, M.3
Bottin, H.4
Fehrmann, S.5
-
31
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, et al. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7: 113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
-
32
-
-
79551675397
-
Repression of ergosterol biosynthesis is essential for stress resistance and is mediated by the Hog1 MAP kinase and the Mot3 and Rox1 transcription factors
-
Montañés FM, Pascual-Ahuir A, Proft M, (2011) Repression of ergosterol biosynthesis is essential for stress resistance and is mediated by the Hog1 MAP kinase and the Mot3 and Rox1 transcription factors. Mol Microbiol 79: 1008-23.
-
(2011)
Mol Microbiol
, vol.79
, pp. 1008-1023
-
-
Montañés, F.M.1
Pascual-Ahuir, A.2
Proft, M.3
-
33
-
-
33748888161
-
A role for sterol levels in oxygen sensing in Saccharomyces cerevisiae
-
Davies BS, Rine J, (2006) A role for sterol levels in oxygen sensing in Saccharomyces cerevisiae. Genetics 174: 191-201.
-
(2006)
Genetics
, vol.174
, pp. 191-201
-
-
Davies, B.S.1
Rine, J.2
-
34
-
-
37549030093
-
Adaptation from standing genetic variation
-
Barrett RD, Schluter D, (2008) Adaptation from standing genetic variation. Trends Ecol Evol 23: 38-44.
-
(2008)
Trends Ecol Evol
, vol.23
, pp. 38-44
-
-
Barrett, R.D.1
Schluter, D.2
-
35
-
-
0035109378
-
Haldane's sieve and adaptation from the standing genetic variation
-
Orr HA, Betancourt AJ, (2001) Haldane's sieve and adaptation from the standing genetic variation. Genetics 157: 875-84.
-
(2001)
Genetics
, vol.157
, pp. 875-884
-
-
Orr, H.A.1
Betancourt, A.J.2
-
36
-
-
18844439645
-
Soft sweeps: molecular population genetics of adaptation from standing genetic variation
-
Hermisson J, Pennings PS, (2005) Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169: 2335-52.
-
(2005)
Genetics
, vol.169
, pp. 2335-2352
-
-
Hermisson, J.1
Pennings, P.S.2
-
37
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti G, Carter DM, Moses AM, Warringer J, Parts L, et al. (2009) Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
-
38
-
-
0022504637
-
Genealogy of principal strains of the yeast genetic stock center
-
Mortimer RK, Johnston JR, (1986) Genealogy of principal strains of the yeast genetic stock center. Genetics 113: 35-43.
-
(1986)
Genetics
, vol.113
, pp. 35-43
-
-
Mortimer, R.K.1
Johnston, J.R.2
-
39
-
-
70350136778
-
Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288c strains
-
Dimitrov LN, Brem RB, Kruglyak L, Gottschling DE, (2009) Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288c strains. Genetics 183: 365-83.
-
(2009)
Genetics
, vol.183
, pp. 365-383
-
-
Dimitrov, L.N.1
Brem, R.B.2
Kruglyak, L.3
Gottschling, D.E.4
-
40
-
-
77951610155
-
Genetic analysis of variation in transcription factor binding in yeast
-
Zheng W, Zhao H, Mancera E, Steinmetz LM, Snyder M, (2010) Genetic analysis of variation in transcription factor binding in yeast. Nature 464: 1187-91.
-
(2010)
Nature
, vol.464
, pp. 1187-1191
-
-
Zheng, W.1
Zhao, H.2
Mancera, E.3
Steinmetz, L.M.4
Snyder, M.5
-
41
-
-
84862002321
-
Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
-
Sharon E, Kalma Y, Sharp A, Raveh-Sadka T, Levo M, et al. (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat Biotechnol 30: 521-30.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 521-530
-
-
Sharon, E.1
Kalma, Y.2
Sharp, A.3
Raveh-Sadka, T.4
Levo, M.5
-
42
-
-
78149432728
-
Variable tandem repeats accelerate evolution of coding and regulatory sequences
-
Gemayel R, Vinces MD, Legendre M, Verstrepen KJ, (2010) Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet 44: 445-77.
-
(2010)
Annu Rev Genet
, vol.44
, pp. 445-477
-
-
Gemayel, R.1
Vinces, M.D.2
Legendre, M.3
Verstrepen, K.J.4
-
44
-
-
70549086797
-
Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
-
Teste MA, Duquenne M, François JM, Parrou JL, (2009) Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol 10: 99.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 99
-
-
Teste, M.A.1
Duquenne, M.2
François, J.M.3
Parrou, J.L.4
-
45
-
-
45449087921
-
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
-
Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J, (2007) qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol 8: R19.
-
(2007)
Genome Biol
, vol.8
-
-
Hellemans, J.1
Mortier, G.2
De Paepe, A.3
Speleman, F.4
Vandesompele, J.5
-
46
-
-
0033039347
-
Immunological analysis of yeast chromatin
-
Meluh PB, Broach JR, (1999) Immunological analysis of yeast chromatin. Methods Enzymol 304: 414-430.
-
(1999)
Methods Enzymol
, vol.304
, pp. 414-430
-
-
Meluh, P.B.1
Broach, J.R.2
|