메뉴 건너뛰기




Volumn 19, Issue 10, 2013, Pages 1384-1393

Annealing to sequences within the primer binding site loop promotes an HIV-1 RNA conformation favoring RNA dimerization and packaging

Author keywords

5 untranslated region; RNA conformation; RNA encapsidation; tRNALys3; Viral assembly

Indexed keywords

VIRUS RNA;

EID: 84884690057     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.038497.113     Document Type: Article
Times cited : (22)

References (44)
  • 1
    • 0038176532 scopus 로고    scopus 로고
    • A novel long distance base-pairing interaction in human immunodeficiency virus type 1 rna occludes the gag start codon
    • DOI 10.1074/jbc.M210291200
    • Abbink TE, Berkhout B. 2003. A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon. J Biol Chem 278: 11601-11611. (Pubitemid 36792722)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.13 , pp. 11601-11611
    • Abbink, T.E.M.1    Berkhout, B.2
  • 2
    • 40149110941 scopus 로고    scopus 로고
    • RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor
    • DOI 10.1128/JVI.01479-07
    • Abbink TE, Berkhout B. 2008. RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor. J Virol 82: 3090-3098. (Pubitemid 351329197)
    • (2008) Journal of Virology , vol.82 , Issue.6 , pp. 3090-3098
    • Abbink, T.E.M.1    Berkhout, B.2
  • 3
    • 21744452846 scopus 로고    scopus 로고
    • The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation
    • DOI 10.1021/bi0502588
    • Abbink TE, Ooms M, Haasnoot PC, Berkhout B. 2005. The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation. Biochemistry 44: 9058-9066. (Pubitemid 40943220)
    • (2005) Biochemistry , vol.44 , Issue.25 , pp. 9058-9066
    • Abbink, T.E.M.1    Ooms, M.2    Haasnoot, P.C.J.3    Berkhout, B.4
  • 4
    • 0025266663 scopus 로고
    • Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus
    • Aldovini A, Young RA. 1990. Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus. J Virol 64: 1920-1926. (Pubitemid 20148432)
    • (1990) Journal of Virology , vol.64 , Issue.5 , pp. 1920-1926
    • Aldovini, A.1    Young, R.A.2
  • 6
    • 0035903185 scopus 로고    scopus 로고
    • Initiation of HIV-1 Reverse Transcription is Regulated by a Primer Activation Signal
    • DOI 10.1074/jbc.M102441200
    • Beerens N, Groot F, Berkhout B. 2001. Initiation of HIV-1 reverse transcription is regulated by a primer activation signal. J Biol Chem 276: 31247-31256. (Pubitemid 37384994)
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.33 , pp. 31247-31256
    • Beerens, N.1    Groot, F.2    Berkhout, B.3
  • 7
    • 0037205458 scopus 로고    scopus 로고
    • In vitro evidence that the untranslated leader of the HIV-1 genome is an RNA checkpoint that regulates multiple functions through conformational changes
    • DOI 10.1074/jbc.M200950200
    • Berkhout B, Ooms M, Beerens N, Huthoff H, Southern E, Verhoef K. 2002. In vitro evidence that the untranslated leader of the HIV-1 genome is an RNA checkpoint that regulates multiple functions through conformational changes. J Biol Chem 277: 19967-19975. (Pubitemid 34967519)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.22 , pp. 19967-19975
    • Berkhout, B.1    Ooms, M.2    Beerens, N.3    Huthoff, H.4    Southern, E.5    Verhoef, K.6
  • 8
    • 0033761894 scopus 로고    scopus 로고
    • Lys genomic placement and the initiation step of reverse transcription in human immunodeficiency virus type 1
    • Lys genomic placement and the initiation step of reverse transcription in human immunodeficiency virus type 1. J Virol 74: 10796-10800.
    • (2000) J Virol , vol.74 , pp. 10796-10800
    • Cen, S.1    Khorchid, A.2    Gabor, J.3    Rong, L.4    Wainberg, M.A.5    Kleiman, L.6
  • 9
    • 0025043509 scopus 로고
    • A mutant of human immunodeficiency virus with reduced RNA packaging and abnormal particle morphology
    • Clavel F, Orenstein JM. 1990. A mutant of human immunodeficiency virus with reduced RNA packaging and abnormal particle morphology. J Virol 64: 5230-5234. (Pubitemid 20329856)
    • (1990) Journal of Virology , vol.64 , Issue.10 , pp. 5230-5234
    • Clavel, F.1    Orenstein, J.M.2
  • 10
    • 0034467898 scopus 로고    scopus 로고
    • Comparison of viral genomic RNA sorting mechanisms in human immunodeficiency virus type 1 (HIV-1), HIV-2, and moloney murine leukemia virus
    • DOI 10.1128/JVI.74.23.11413-11417.2000
    • Dorman N, Lever A. 2000. Comparison of viral genomic RNA sorting mechanisms in human immunodeficiency virus type 1 (HIV-1), HIV-2, and Moloney murine leukemia virus. J Virol 74: 11413-11417. (Pubitemid 32224013)
    • (2000) Journal of Virology , vol.74 , Issue.23 , pp. 11413-11417
    • Dorman, N.1    Lever, A.2
  • 11
    • 67749147464 scopus 로고    scopus 로고
    • Lys annealing to viral RNA in human immunodeficiency virus type 1
    • Lys annealing to viral RNA in human immunodeficiency virus type 1. J Virol 83: 8099-8107.
    • (2009) J Virol , vol.83 , pp. 8099-8107
    • Guo, F.1    Saadatmand, J.2    Niu, M.3    Kleiman, L.4
  • 13
    • 0035038089 scopus 로고    scopus 로고
    • Two alternating structures of the HIV-1 leader RNA
    • DOI 10.1017/S1355838201001881
    • Huthoff H, Berkhout B. 2001. Two alternating structures of the HIV-1 leader RNA. RNA 7: 143-157. (Pubitemid 32381937)
    • (2001) RNA , vol.7 , Issue.1 , pp. 143-157
    • Huthoff, H.1    Berkhout, B.2
  • 14
    • 0027331556 scopus 로고
    • Lys modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
    • Lys modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem 268: 25269-25272.
    • (1993) J Biol Chem , vol.268 , pp. 25269-25272
    • Isel, C.1    Marquet, R.2    Keith, G.3    Ehresmann, C.4    Ehresmann, B.5
  • 15
    • 0033555335 scopus 로고    scopus 로고
    • The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure
    • DOI 10.1093/nar/27.2.446
    • Klasens BI, Thiesen M, Virtanen A, Berkhout B. 1999. The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure. Nucleic Acids Res 27: 446-454. (Pubitemid 29210007)
    • (1999) Nucleic Acids Research , vol.27 , Issue.2 , pp. 446-454
    • Klasens, B.I.F.1    Thiesen, M.2    Virtanen, A.3    Berkhout, B.4
  • 16
    • 3042760527 scopus 로고    scopus 로고
    • Lys3 in HIV-1
    • DOI 10.2174/1570162043484988
    • Kleiman L, Halwani R, Javanbakht H. 2004. The selective packaging and annealing of primer tRNALys3 in HIV-1. Curr HIV Res 2: 163-175. (Pubitemid 38854928)
    • (2004) Current HIV Research , vol.2 , Issue.2 , pp. 163-175
    • Kleiman, L.1    Halwani, R.2    Javanbakht, H.3
  • 17
    • 0028027708 scopus 로고
    • A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA
    • DOI 10.1021/bi00249a035
    • Laughrea M, Jetté L. 1994. A 19-nucleotide sequence upstream of the 5′ major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA. Biochemistry 33: 13464-13474. (Pubitemid 24373263)
    • (1994) Biochemistry , vol.33 , Issue.45 , pp. 13464-13474
    • Laughrea, M.1    Jette, L.2
  • 18
    • 0024320772 scopus 로고
    • Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions
    • Lever A, Göttlinger H, HaseltineW, Sodroski J. 1989. Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions. J Virol 63: 4085-4087. (Pubitemid 19205491)
    • (1989) Journal of Virology , vol.63 , Issue.9 , pp. 4085-4087
    • Lever, A.1    Gottlinger, H.2    Haseltine, W.3    Sodroski, J.4
  • 22
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • DOI 10.1093/nar/gki591
    • Markham NR, Zuker M. 2005. DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res 33: W577-W581. (Pubitemid 44529988)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Markham, N.R.1    Zuker, M.2
  • 23
    • 0025736770 scopus 로고
    • Dimerization of human immunodeficiency virus (type 1) RNA: Stimulation by cations and possible mechanism
    • Marquet R, Baudin F, Gabus C, Darlix J-L, Mougel M, Ehresmann C, Ehresmann B. 1991. Dimerization of human immunodeficiency virus (type 1) RNA: Stimulation by cations and possible mechanism. Nucleic Acids Res 19: 2349-2357. (Pubitemid 21902970)
    • (1991) Nucleic Acids Research , vol.19 , Issue.9 , pp. 2349-2357
    • Marquet, R.1    Baudin, F.2    Gabus, C.3    Darlix, J.-L.4    Mougel, M.5    Ehresmann, C.6    Ehresmann, B.7
  • 24
    • 34247095230 scopus 로고    scopus 로고
    • Dimer initiation signal of human immunodeficiency virus type 1: Its role in partner selection during RNA copackaging and its effects on recombination
    • DOI 10.1128/JVI.02589-06
    • Moore MD, Fu W, Nikolaitchik O, Chen J, Ptak RG, Hu WS. 2007. Dimer initiation signal of human immunodeficiency virus type 1: Its role in partner selection during RNA copackaging and its effects on recombination. J Virol 81: 4002-4011. (Pubitemid 46586895)
    • (2007) Journal of Virology , vol.81 , Issue.8 , pp. 4002-4011
    • Moore, M.D.1    Fu, W.2    Nikolaitchik, O.3    Chen, J.4    Ptak, R.G.5    Hu, W.-S.6
  • 25
    • 73449133449 scopus 로고    scopus 로고
    • Probing the HIV-1 genomic RNA trafficking pathway and dimerization by genetic recombination and single virion analyses
    • Moore MD, Nikolaitchik OA, Chen J, Hammarskjold ML, Rekosh D, Hu WS. 2009. Probing the HIV-1 genomic RNA trafficking pathway and dimerization by genetic recombination and single virion analyses. PLoS Pathog 5: e1000627.
    • (2009) PLoS Pathog , vol.5
    • Moore, M.D.1    Nikolaitchik, O.A.2    Chen, J.3    Hammarskjold, M.L.4    Rekosh, D.5    Hu, W.S.6
  • 26
    • 70349145411 scopus 로고    scopus 로고
    • Time-resolved RNA SHAPE chemistry: Quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution
    • Mortimer SA, Weeks KM. 2009. Time-resolved RNA SHAPE chemistry: Quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution. Nat Protoc 4: 1413-1421.
    • (2009) Nat Protoc , vol.4 , pp. 1413-1421
    • Mortimer, S.A.1    Weeks, K.M.2
  • 27
    • 0023614254 scopus 로고
    • Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein
    • DOI 10.1016/0092-8674(87)90247-9
    • Muesing MA, Smith DH, Capon DJ. 1987. Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein. Cell 48: 691-701. (Pubitemid 18096946)
    • (1987) Cell , vol.48 , Issue.4 , pp. 691-701
    • Muesing, M.A.1    Smith, D.H.2    Capon, D.J.3
  • 28
    • 33645473868 scopus 로고    scopus 로고
    • 7SL RNA, but not the 54-kd signal recognition particle protein, is an abundant component of both infectious HIV-1 and minimal virus-like particles
    • Onafuwa-Nuga AA, Telesnitsky A, King SR. 2006. 7SL RNA, but not the 54-kd signal recognition particle protein, is an abundant component of both infectious HIV-1 and minimal virus-like particles. RNA 12: 542-546.
    • (2006) RNA , vol.12 , pp. 542-546
    • Onafuwa-Nuga, A.A.1    Telesnitsky, A.2    King, S.R.3
  • 29
    • 4544337311 scopus 로고    scopus 로고
    • A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions
    • DOI 10.1128/JVI.78.19.10814-10819.2004
    • Ooms M, Huthoff H, Russell R, Liang C, Berkhout B. 2004a. A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions. J Virol 78: 10814-10819. (Pubitemid 39258406)
    • (2004) Journal of Virology , vol.78 , Issue.19 , pp. 10814-10819
    • Ooms, M.1    Huthoff, H.2    Russell, R.3    Liang, C.4    Berkhout, B.5
  • 30
    • 1342285100 scopus 로고    scopus 로고
    • Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays
    • DOI 10.1093/nar/gkh206
    • Ooms M, Verhoef K, Southern E, Huthoff H, Berkhout B. 2004b. Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays. Nucleic Acids Res 32: 819-827. (Pubitemid 38263075)
    • (2004) Nucleic Acids Research , vol.32 , Issue.2 , pp. 819-827
    • Ooms, M.1    Verhoef, K.2    Southern, E.3    Huthoff, H.4    Berkhout, B.5
  • 31
    • 83755205383 scopus 로고    scopus 로고
    • Simplified RNA secondary structure mapping by automation of SHAPE data analysis
    • Pang PS, Elazar M, Pham EA, Glenn JS. 2011. Simplified RNA secondary structure mapping by automation of SHAPE data analysis. Nucleic Acids Res 39: e151.
    • (2011) Nucleic Acids Res , vol.39
    • Pang, P.S.1    Elazar, M.2    Pham, E.A.3    Glenn, J.S.4
  • 32
    • 84867191740 scopus 로고    scopus 로고
    • HIV RNA dimerisation interference by antisense oligonucleotides targeted to the 5′ UTR structural elements
    • Reyes-Darias JA, Sanchez-Luque FJ, Berzal-Herranz A. 2012. HIV RNA dimerisation interference by antisense oligonucleotides targeted to the 5′ UTR structural elements. Virus Res 169: 63-71.
    • (2012) Virus Res , vol.169 , pp. 63-71
    • Reyes-Darias, J.A.1    Sanchez-Luque, F.J.2    Berzal-Herranz, A.3
  • 33
    • 0022006369 scopus 로고
    • The location of cis-acting regulatory sequences in the human T cell lymphotropic virus type III (HTLV-III/LAV) long terminal repeat
    • Rosen CA, Sodroski JG, Haseltine WA. 1985. The location of cis-acting regulatory sequences in the human T cell lymphotropic virus type III (HTLV-III/LAV) long terminal repeat. Cell 41: 813-823. (Pubitemid 15243388)
    • (1985) Cell , vol.41 , Issue.3 , pp. 813-823
    • Rosen, C.A.1    Sodroski, J.G.2    Haseltine, W.A.3
  • 35
    • 0037379439 scopus 로고    scopus 로고
    • Possible role of dimerization in human immunodeficiency virus type 1 genome RNA packaging
    • DOI 10.1128/JVI.77.7.4060-4069.2003
    • Sakuragi J, Ueda S, Iwamoto A, Shioda T. 2003. Possible role of dimerization in human immunodeficiency virus type 1 genome RNA packaging. J Virol 77: 4060-4069. (Pubitemid 36350946)
    • (2003) Journal of Virology , vol.77 , Issue.7 , pp. 4060-4069
    • Sakuragi, J.-I.1    Ueda, S.2    Iwamoto, A.3    Shioda, T.4
  • 36
    • 34547126658 scopus 로고    scopus 로고
    • Minimal region sufficient for genome dimerization in the human immunodeficiency virus type 1 virion and its potential roles in the early stages of viral replication
    • DOI 10.1128/JVI.00429-07
    • Sakuragi J, Sakuragi S, Shioda T. 2007. Minimal region sufficient for genome dimerization in the human immunodeficiency virus type 1 virion and its potential roles in the early stages of viral replication. J Virol 81: 7985-7992. (Pubitemid 47101483)
    • (2007) Journal of Virology , vol.81 , Issue.15 , pp. 7985-7992
    • Sakuragi, J.-I.1    Sakuragi, S.2    Shioda, T.3
  • 40
    • 48149098589 scopus 로고    scopus 로고
    • Destabilization of the TAR hairpin affects the structure and function of the HIV-1 leader RNA
    • Vrolijk MM, Ooms M, Harwig A, Das AT, Berkhout B. 2008. Destabilization of the TAR hairpin affects the structure and function of the HIV-1 leader RNA. Nucleic Acids Res 36: 4352-4363.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4352-4363
    • Vrolijk, M.M.1    Ooms, M.2    Harwig, A.3    Das, A.T.4    Berkhout, B.5
  • 41
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson KA, Merino EJ, Weeks KM. 2006. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 44
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415. (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.