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Volumn 9, Issue 8, 2013, Pages

Generation of Tandem Direct Duplications by Reversed-Ends Transposition of Maize Ac Elements

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA TRANSPOSITION; GENE DELETION; GENE DUPLICATION; GENE FREQUENCY; GENE ISOLATION; GENOTYPE; HETEROZYGOTE; MAIZE; MOLECULAR EVOLUTION; NONHUMAN; PLANT GENOME; SEQUENCE ANALYSIS; TRANSPOSON;

EID: 84884660374     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1003691     Document Type: Article
Times cited : (38)

References (55)
  • 5
    • 33745088890 scopus 로고    scopus 로고
    • Intron gain and loss in segmentally duplicated genes in rice
    • Lin H, Zhu W, Silva JC, Gu X, Buell CR, (2006) Intron gain and loss in segmentally duplicated genes in rice. Genome Biol 7: R41.
    • (2006) Genome Biol , vol.7
    • Lin, H.1    Zhu, W.2    Silva, J.C.3    Gu, X.4    Buell, C.R.5
  • 6
    • 0141564555 scopus 로고    scopus 로고
    • Evidence that rice and other cereals are ancient aneuploids
    • Vandepoele K, Simillion C, Van de Peer Y, (2003) Evidence that rice and other cereals are ancient aneuploids. Plant Cell 15: 2192-2202.
    • (2003) Plant Cell , vol.15 , pp. 2192-2202
    • Vandepoele, K.1    Simillion, C.2    Van de Peer, Y.3
  • 7
    • 14244250895 scopus 로고    scopus 로고
    • Duplication and DNA segmental loss in the rice genome: implications for diploidization
    • Wang X, Shi X, Hao B, Ge S, Luo J, (2005) Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol 165: 937-946.
    • (2005) New Phytol , vol.165 , pp. 937-946
    • Wang, X.1    Shi, X.2    Hao, B.3    Ge, S.4    Luo, J.5
  • 8
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE, Chapman BA, (2004) Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci U S A 101: 9903-9908.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 9
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International-Rice-Genome-Sequencing-Project
    • International-Rice-Genome-Sequencing-Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 10
    • 0035147066 scopus 로고    scopus 로고
    • Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses
    • Gaut BS, (2001) Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res 11: 55-66.
    • (2001) Genome Res , vol.11 , pp. 55-66
    • Gaut, B.S.1
  • 11
    • 0027135403 scopus 로고
    • Homoeologous relationships of rice, wheat and maize chromosomes
    • Ahn S, Anderson JA, Sorrells ME, Tanksley SD, (1993) Homoeologous relationships of rice, wheat and maize chromosomes. Mol Gen Genet 241: 483-490.
    • (1993) Mol Gen Genet , vol.241 , pp. 483-490
    • Ahn, S.1    Anderson, J.A.2    Sorrells, M.E.3    Tanksley, S.D.4
  • 12
    • 33845593719 scopus 로고    scopus 로고
    • Ancestral Rice Blocks Define Multiple Related Regions in the Maize Genome
    • Odland W, Baumgarten A, Phillips R, (2006) Ancestral Rice Blocks Define Multiple Related Regions in the Maize Genome. Crop Science 46: S-41-S-48.
    • (2006) Crop Science , vol.46 , pp. 41-48
    • Odland, W.1    Baumgarten, A.2    Phillips, R.3
  • 13
    • 0029334974 scopus 로고
    • Cereal genome evolution. Grasses, line up and form a circle
    • Moore G, Devos KM, Wang Z, Gale MD, (1995) Cereal genome evolution. Grasses, line up and form a circle. Curr Biol 5: 737-739.
    • (1995) Curr Biol , vol.5 , pp. 737-739
    • Moore, G.1    Devos, K.M.2    Wang, Z.3    Gale, M.D.4
  • 14
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: complexity, diversity, and dynamics
    • Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3    Stein, J.C.4    Wei, F.5
  • 15
    • 73649121258 scopus 로고    scopus 로고
    • Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
    • Springer NM, Ying K, Fu Y, Ji T, Yeh C-T, et al. (2009) Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content. PLoS Genet 5: e1000734.
    • (2009) PLoS Genet , vol.5
    • Springer, N.M.1    Ying, K.2    Fu, Y.3    Ji, T.4    Yeh, C.-T.5
  • 16
    • 77958462555 scopus 로고    scopus 로고
    • Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales
    • DeBolt S, (2010) Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales. Genome Biol Evol 2: 441-453.
    • (2010) Genome Biol Evol , vol.2 , pp. 441-453
    • DeBolt, S.1
  • 17
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon S, Mitra A, Baumgarten A, Young N, May G, (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biology 4: 10.
    • (2004) BMC Plant Biology , vol.4 , pp. 10
    • Cannon, S.1    Mitra, A.2    Baumgarten, A.3    Young, N.4    May, G.5
  • 21
    • 0035902459 scopus 로고    scopus 로고
    • Break-induced replication: a review and an example in budding yeast
    • Kraus E, Leung WY, Haber JE, (2001) Break-induced replication: a review and an example in budding yeast. Proc Natl Acad Sci U S A 98: 8255-8262.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8255-8262
    • Kraus, E.1    Leung, W.Y.2    Haber, J.E.3
  • 22
    • 0030760609 scopus 로고    scopus 로고
    • "Break Copy" Duplication: A Model for Chromosome Fragment Formation in Saccharomyces cerevisiae
    • Morrow DM, Connelly C, Hieter P, (1997) "Break Copy" Duplication: A Model for Chromosome Fragment Formation in Saccharomyces cerevisiae. Genetics 147: 371-382.
    • (1997) Genetics , vol.147 , pp. 371-382
    • Morrow, D.M.1    Connelly, C.2    Hieter, P.3
  • 23
    • 59249105978 scopus 로고    scopus 로고
    • A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation
    • Hastings PJ, Ira G, Lupski JR, (2009) A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation. PLoS Genet 5: e1000327.
    • (2009) PLoS Genet , vol.5
    • Hastings, P.J.1    Ira, G.2    Lupski, J.R.3
  • 24
    • 37349109667 scopus 로고    scopus 로고
    • A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders
    • Lee JA, Carvalho CM, Lupski JR, (2007) A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders. Cell 131: 1235-1247.
    • (2007) Cell , vol.131 , pp. 1235-1247
    • Lee, J.A.1    Carvalho, C.M.2    Lupski, J.R.3
  • 25
    • 0034307716 scopus 로고    scopus 로고
    • It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements
    • Gray YHM, (2000) It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements. Trends in Genetics 16: 461-468.
    • (2000) Trends in Genetics , vol.16 , pp. 461-468
    • Gray, Y.H.M.1
  • 26
    • 0030453845 scopus 로고    scopus 로고
    • P-element-induced recombination in Drosophila melanogaster: hybrid element insertion
    • Gray YH, Tanaka MM, Sved JA, (1996) P-element-induced recombination in Drosophila melanogaster: hybrid element insertion. Genetics 144: 1601-1610.
    • (1996) Genetics , vol.144 , pp. 1601-1610
    • Gray, Y.H.1    Tanaka, M.M.2    Sved, J.A.3
  • 27
    • 0030470202 scopus 로고    scopus 로고
    • Flanking duplications and deletions associated with P-induced male recombination in Drosophila
    • Preston CR, Sved JA, Engels WR, (1996) Flanking duplications and deletions associated with P-induced male recombination in Drosophila. Genetics 144: 1623-1638.
    • (1996) Genetics , vol.144 , pp. 1623-1638
    • Preston, C.R.1    Sved, J.A.2    Engels, W.R.3
  • 28
    • 0027603760 scopus 로고
    • Molecular evidence that chromosome breakage by Ds elements is caused by aberrant transposition
    • Weil CF, Wessler SR, (1993) Molecular evidence that chromosome breakage by Ds elements is caused by aberrant transposition. Plant Cell 5: 515-522.
    • (1993) Plant Cell , vol.5 , pp. 515-522
    • Weil, C.F.1    Wessler, S.R.2
  • 29
    • 77953195378 scopus 로고    scopus 로고
    • Spatial configuration of transposable element Ac termini affects their ability to induce chromosomal breakage in maize
    • Yu C, Zhang J, Pulletikurti V, Weber DF, Peterson T, (2010) Spatial configuration of transposable element Ac termini affects their ability to induce chromosomal breakage in maize. Plant Cell 22: 744-754.
    • (2010) Plant Cell , vol.22 , pp. 744-754
    • Yu, C.1    Zhang, J.2    Pulletikurti, V.3    Weber, D.F.4    Peterson, T.5
  • 30
    • 0032710552 scopus 로고    scopus 로고
    • Genome rearrangements by nonlinear transposons in maize
    • Zhang J, Peterson T, (1999) Genome rearrangements by nonlinear transposons in maize. Genetics 153: 1403-1410.
    • (1999) Genetics , vol.153 , pp. 1403-1410
    • Zhang, J.1    Peterson, T.2
  • 31
    • 4644253920 scopus 로고    scopus 로고
    • Transposition of reversed Ac element ends generates chromosome rearrangements in maize
    • Zhang J, Peterson T, (2004) Transposition of reversed Ac element ends generates chromosome rearrangements in maize. Genetics 167: 1929-1937.
    • (2004) Genetics , vol.167 , pp. 1929-1937
    • Zhang, J.1    Peterson, T.2
  • 32
    • 57749094836 scopus 로고    scopus 로고
    • Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation
    • Huang JT, Dooner HK, (2008) Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation. Plant Cell 20: 2019-2032.
    • (2008) Plant Cell , vol.20 , pp. 2019-2032
    • Huang, J.T.1    Dooner, H.K.2
  • 33
    • 83755172732 scopus 로고    scopus 로고
    • Transposon Ac/Ds-induced chromosomal rearrangements at the rice OsRLG5 locus
    • Xuan YH, Piao HL, Je BI, Park SJ, Park SH, et al. (2011) Transposon Ac/Ds-induced chromosomal rearrangements at the rice OsRLG5 locus. Nucleic Acids Res 39: e149.
    • (2011) Nucleic Acids Res , vol.39
    • Xuan, Y.H.1    Piao, H.L.2    Je, B.I.3    Park, S.J.4    Park, S.H.5
  • 35
    • 76949127123 scopus 로고
    • Chromosome organization and genic expression
    • McClintock B, (1951) Chromosome organization and genic expression. Cold Spring Harb Symp Quant Biol 16: 13-47.
    • (1951) Cold Spring Harb Symp Quant Biol , vol.16 , pp. 13-47
    • McClintock, B.1
  • 36
    • 63049089797 scopus 로고    scopus 로고
    • Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize
    • Zhang J, Yu C, Pulletikurti V, Lamb J, Danilova T, et al. (2009) Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize. Genes Dev 23: 755-765.
    • (2009) Genes Dev , vol.23 , pp. 755-765
    • Zhang, J.1    Yu, C.2    Pulletikurti, V.3    Lamb, J.4    Danilova, T.5
  • 37
    • 0037392872 scopus 로고    scopus 로고
    • Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize
    • Singh M, Lewis PE, Hardeman K, Bai L, Rose JK, et al. (2003) Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize. Plant Cell 15: 874-884.
    • (2003) Plant Cell , vol.15 , pp. 874-884
    • Singh, M.1    Lewis, P.E.2    Hardeman, K.3    Bai, L.4    Rose, J.K.5
  • 38
    • 0035051285 scopus 로고    scopus 로고
    • Regulation of activator/dissociation transposition by replication and DNA methylation
    • Ros F, Kunze R, (2001) Regulation of activator/dissociation transposition by replication and DNA methylation. Genetics 157: 1723-1733.
    • (2001) Genetics , vol.157 , pp. 1723-1733
    • Ros, F.1    Kunze, R.2
  • 39
    • 84884602000 scopus 로고    scopus 로고
    • The Mechanism of Ac/Ds Transposition
    • In: Fedoroff NV, editor, Oxford, UK: Wiley-Blackwell
    • Peterson T, Zhang J (2013) The Mechanism of Ac/Ds Transposition. In: Fedoroff NV, editor. Plant Transposons and Genome Dynamics in Evolution. Oxford, UK: Wiley-Blackwell. pp. 41-59.
    • (2013) Plant Transposons and Genome Dynamics in Evolution , pp. 41-59
    • Peterson, T.1    Zhang, J.2
  • 40
    • 33745148197 scopus 로고    scopus 로고
    • Processes of copy-number change in human DNA: The dynamics of α-globin gene deletion
    • Lam K-WG, Jeffreys AJ, (2006) Processes of copy-number change in human DNA: The dynamics of α-globin gene deletion. Proceedings of the National Academy of Sciences 103: 8921-8927.
    • (2006) Proceedings of the National Academy of Sciences , vol.103 , pp. 8921-8927
    • Lam, K.-W.G.1    Jeffreys, A.J.2
  • 42
    • 37549018501 scopus 로고    scopus 로고
    • Germline rates of de novo meiotic deletions and duplications causing several genomic disorders
    • Turner DJ, Miretti M, Rajan D, Fiegler H, Carter NP, et al. (2008) Germline rates of de novo meiotic deletions and duplications causing several genomic disorders. Nat Genet 40: 90-95.
    • (2008) Nat Genet , vol.40 , pp. 90-95
    • Turner, D.J.1    Miretti, M.2    Rajan, D.3    Fiegler, H.4    Carter, N.P.5
  • 43
    • 1042279123 scopus 로고    scopus 로고
    • Interchromatid and interhomolog recombination in Arabidopsis thaliana
    • Molinier J, Ries G, Bonhoeffer S, Hohn B, (2004) Interchromatid and interhomolog recombination in Arabidopsis thaliana. Plant Cell 16: 342-352.
    • (2004) Plant Cell , vol.16 , pp. 342-352
    • Molinier, J.1    Ries, G.2    Bonhoeffer, S.3    Hohn, B.4
  • 45
    • 0000776246 scopus 로고
    • Large-scale chromosomal restructuring is induced by the transposable element tam3 at the nivea locus of antirrhinum majus
    • Martin C, Mackay S, Carpenter R, (1988) Large-scale chromosomal restructuring is induced by the transposable element tam3 at the nivea locus of antirrhinum majus. Genetics 119: 171-184.
    • (1988) Genetics , vol.119 , pp. 171-184
    • Martin, C.1    Mackay, S.2    Carpenter, R.3
  • 46
    • 0024815126 scopus 로고
    • Genome juggling by transposons: Tam3-induced rearrangements in Antirrhinum majus
    • Martin C, Lister C, (1989) Genome juggling by transposons: Tam3-induced rearrangements in Antirrhinum majus. Dev Genet 10: 438-451.
    • (1989) Dev Genet , vol.10 , pp. 438-451
    • Martin, C.1    Lister, C.2
  • 47
    • 0027692822 scopus 로고
    • Transposon-induced inversion in Antirrhinum modifies nivea gene expression to give a novel flower color pattern under the control of cycloidearadialis
    • Lister C, Jackson D, Martin C, (1993) Transposon-induced inversion in Antirrhinum modifies nivea gene expression to give a novel flower color pattern under the control of cycloidearadialis. Plant Cell 5: 1541-1553.
    • (1993) Plant Cell , vol.5 , pp. 1541-1553
    • Lister, C.1    Jackson, D.2    Martin, C.3
  • 48
    • 33845984917 scopus 로고    scopus 로고
    • Gene discovery and annotation using LCM-454 transcriptome sequencing
    • Emrich SJ, Barbazuk WB, Li L, Schnable PS, (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 17: 69-73.
    • (2007) Genome Res , vol.17 , pp. 69-73
    • Emrich, S.J.1    Barbazuk, W.B.2    Li, L.3    Schnable, P.S.4
  • 49
    • 45549109750 scopus 로고    scopus 로고
    • Genome assembly forensics: finding the elusive mis-assembly
    • Phillippy AM, Schatz MC, Pop M, (2008) Genome assembly forensics: finding the elusive mis-assembly. Genome Biol 9: R55.
    • (2008) Genome Biol , vol.9
    • Phillippy, A.M.1    Schatz, M.C.2    Pop, M.3
  • 50
    • 33846939973 scopus 로고    scopus 로고
    • Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
    • Pritham EJ, Putliwala T, Feschotte C, (2007) Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene 390: 3-17.
    • (2007) Gene , vol.390 , pp. 3-17
    • Pritham, E.J.1    Putliwala, T.2    Feschotte, C.3
  • 51
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C, Pritham EJ, (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368.
    • (2007) Annu Rev Genet , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 52
    • 79955937546 scopus 로고    scopus 로고
    • Genome rearrangements in maize induced by alternative transposition of reversed Ac/Ds termini
    • Yu C, Zhang J, Peterson T, (2011) Genome rearrangements in maize induced by alternative transposition of reversed Ac/Ds termini. Genetics 188: 59-67.
    • (2011) Genetics , vol.188 , pp. 59-67
    • Yu, C.1    Zhang, J.2    Peterson, T.3
  • 53
    • 78649464548 scopus 로고    scopus 로고
    • Divergence of gene regulation through chromosomal rearrangements
    • Goettel W, Messing J, (2010) Divergence of gene regulation through chromosomal rearrangements. BMC Genomics 11: 678.
    • (2010) BMC Genomics , vol.11 , pp. 678
    • Goettel, W.1    Messing, J.2
  • 54
    • 0031526548 scopus 로고    scopus 로고
    • Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
    • Porebski S, Bailey L, Baum B, (1997) Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Molecular Biology Reporter 15: 8-15.
    • (1997) Plant Molecular Biology Reporter , vol.15 , pp. 8-15
    • Porebski, S.1    Bailey, L.2    Baum, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.