Prevalence of avian paramyxovirus type 1 in Mallards during autumn migration in the western Baltic Sea region

Virology Journal

Volumn 10, Issue , 2013, Pages

  Tolf, Conny ^a   Wille, Michelle ^a   Haidar, Ann Katrin ^a   Avril, Alexis ^a   Zohari, Siamak ^b   Waldenström, Jonas ^a  

^a LINNAEUS UNIVERSITY   (Sweden)

^b NATIONAL VETERINARY INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTUMN; AVULAVIRUS; BALTIC SEA; BIRD; CONFIDENCE INTERVAL; FUSION GENE; MOLECULAR PHYLOGENY; NONHUMAN; POPULATION MIGRATION; PREVALENCE; REAL TIME POLYMERASE CHAIN REACTION; SWEDEN; VIRUS DETECTION; VIRUS ISOLATION; VIRUS SHEDDING; VIRUS STRAIN;

ANIMAL MIGRATION; ANIMALS; ANSERIFORMES; CLUSTER ANALYSIS; MOLECULAR SEQUENCE DATA; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; PHYLOGENY; PREVALENCE; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEASONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SWEDEN; VIRAL FUSION PROTEINS;

EID: 84884381921     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-285     Document Type: Article

References (46)

1. Newcastle disease in the European Union 2000 to 2009. Alexander DJ, Avian Pathol 2011 40 547 558
2. Attachment and Entry. Flint SJ, Enquist LW, Racaniello VR, Skalka AM, Principles of Virology. Volume 1 Washington, DC: ASM press, Flint SJ, Enquist LW, Racaniello VR, Skalka AM, 3 2009 128 165
3. Quantitative basic residue requirements in the cleavage-activation site of the fusion glycoprotein as a determinant of virulence for Newcastle disease virus. Glickman RL, Syddall RJ, Iorio RM, Sheehan JP, Bratt MA, J Virol 1988 62 354 356 (Pubitemid 18050824)
4. Virulence of newcastle disease virus: what is known so far? Dortmans JC, Koch G, Rottier PJ, Peeters BP, Vet Res 2011 42 122
5. Expression of factor X and its significance for the determination of paramyxovirus tropism in the chick embryo. Ogasawara T, Gotoh B, Suzuki H, Asaka J, Shimokata K, Rott R, Nagai Y, EMBO J 1992 11 467 472
6. Role of fusion protein cleavage site in the virulence of Newcastle disease virus. Panda A, Huang Z, Elankumaran S, Rockemann DD, Samal SK, Microb Pathog 2004 36 1 10 (Pubitemid 37476184)
7. Effect of fusion protein cleavage site mutations on virulence of Newcastle disease virus: non-virulent cleavage site mutants revert to virulence after one passage in chicken brain. de Leeuw OS, Hartog L, Koch G, Peeters BP, J Gen Virol 2003 84 475 484 (Pubitemid 36175724)
8. Phylogenetic diversity among low-virulence newcastle disease viruses from waterfowl and shorebirds and comparison of genotype distributions to those of poultry-origin isolates. Kim LM, King DJ, Curry PE, Suarez DL, Swayne DE, Stallknecht DE, Slemons RD, Pedersen JC, Senne DA, Winker K, Afonso CL, J Virol 2007 81 12641 12653 (Pubitemid 350085877)
9. Newcastle disease: evolution of genotypes and the related diagnostic challenges. Miller PJ, Decanini EL, Afonso CL, Infect Genet Evol 2010 10 26 35
10. Genetic diversity of avian paramyxovirus type 1: proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes. Diel DG, da Silva LH, Liu H, Wang Z, Miller PJ, Afonso CL, Infect Genet Evol 2012 12 1770 1779
11. Genomic and biological characterization of a velogenic Newcastle disease virus isolated from a healthy backyard poultry flock in 2010. Munir M, Abbas M, Khan MT, Zohari S, Berg M, Virol J 2012 9 46
12. Virulent Newcastle disease in Australia: molecular epidemiological analysis of viruses isolated prior to and during the outbreaks of 1998-2000. Gould AR, Kattenbelt JA, Selleck P, Hansson E, Della-Porta A, Westbury HA, Virus research 2001 77 51 60 (Pubitemid 32622810)
13. Newcastle disease virus: an evolving pathogen? Westbury H, Avian Pathol 2001 30 5 11 (Pubitemid 32100407)
14. Generation of velogenic Newcastle disease viruses from a nonpathogenic waterfowl isolate by passaging in chickens. Shengqing Y, Kishida N, Ito H, Kida H, Otsuki K, Kawaoka Y, Ito T, Virology 2002 301 206 211 (Pubitemid 35176545)
15. Evaluating viral interference between Influenza virus and Newcastle disease virus using real-time reverse transcription-polymerase chain reaction in chicken eggs. Ge S, Zheng D, Zhao Y, Liu H, Liu W, Sun Q, Li J, Yu S, Zuo Y, Han X, et al. Virol J 2012 9 128
16. Phylogenetic analysis of Newcastle disease viruses isolated from waterfowl in the upper midwest region of the United States. Jindal N, Chander Y, Chockalingam AK, de Abin M, Redig PT, Goyal SM, Virol J 2009 6 191
17. Surveillance of influenza A virus in migratory waterfowl in northern Europe. Wallensten A, Munster VJ, Latorre-Margalef N, Brytting M, Elmberg J, Fouchier RA, Fransson T, Haemig PD, Karlsson M, Lundkvist A, et al. Emerg Infect Dis 2007 13 404 411 (Pubitemid 46348127)
18. Effects of influenza A virus infection on migrating mallard ducks. Latorre-Margalef N, Gunnarsson G, Munster VJ, Fouchier RA, Osterhaus AD, Elmberg J, Olsen B, Wallensten A, Haemig PD, Fransson T, et al. Proc Biol Sci 2009 276 1029 1036
19. Avian influenza surveillance with FTA cards: field methods, biosafety, and transportation issues solved. Kraus RH, van Hooft P, Waldenstrom J, Latorre-Margalef N, Ydenberg RC, Prins HH, J Vis Exp 2011 54 1 6
20. Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, Perdue ML, Lohman K, Daum LT, Suarez DL, J Clin Microbiol 2002 40 3256 3260 (Pubitemid 34977437)
21. Development of a real-time reverse-transcription PCR for detection of newcastle disease virus RNA in clinical samples. Wise MG, Suarez DL, Seal BS, Pedersen JC, Senne DA, King DJ, Kapczynski DR, Spackman E, J Clin Microbiol 2004 42 329 338 (Pubitemid 38082740)
22. WHO, Manual for the laboratory diagnosis and virological surveillance of influenza 2011 Available: http://whqlibdoc.who.int/publications/2011/ 9789241548090-eng.pdf
23. Drummond AA B, Buxton S, Cheung M, Cooper A, Geneious v5.3 2010 http://www.geneious.com
24. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Katoh K, Kuma K, Toh H, Miyata T, Nucleic Acids Res 2005 33 511 518 (Pubitemid 40360980)
25. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Gouy M, Guindon S, Gascuel O, Mol Biol Evol 2010 27 221 224
26. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Tamura K, Nei M, Mol Biol Evol 1993 10 512 526 (Pubitemid 23157236)
27. Confidence-Limits on Phylogenies-an Approach Using the Bootstrap. Felsenstein J, Evolution 1985 39 783 791
28. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 2731 2739
29. Approximate is better than "exact" for interval estimation of binomial proportions. Agresti A, Coull BA, The American Statistician 1998 52 119 126
30. On the interpretation of x(2) from contingency tables, and the calculation of P. Fisher RA, J R Stat Soc 1922 85 87 94
31. Complete genome characterisation of a Newcastle disease virus isolated during an outbreak in Sweden in 1997. Linde AM, Munir M, Zohari S, Stahl K, Baule C, Renstrom L, Berg M, Virus Genes 2010 41 165 173
32. Whole genome sequencing and characterization of a virulent Newcastle disease virus isolated from an outbreak in Sweden. Munir M, Linde AM, Zohari S, Stahl K, Baule C, Engstrom B, LH MR, Berg M, Virus Genes 2011 43 261 271
33. Disease dynamics and bird migration-linking mallards Anas platyrhynchos and subtype diversity of the influenza A virus in time and space. Gunnarsson G, Latorre-Margalef N, Hobson KA, Van Wilgenburg SL, Elmberg J, Olsen B, Fouchier RA, Waldenstrom J, PLoS One 2012 7 35679
34. Molecular epidemiology of outbreak-associated and wild-waterfowl-derived newcastle disease virus strains in Finland, including a novel class I genotype. Lindh E, Ek-Kommonen C, Vaananen VM, Alasaari J, Vaheri A, Vapalahti O, Huovilainen A, J Clin Microbiol 2012 50 3664 3673
35. Development of an L gene real-time reverse-transcription PCR assay for the detection of avian paramyxovirus type 1 RNA in clinical samples. Fuller CM, Brodd L, Irvine RM, Alexander DJ, Aldous EW, Arch Virol 2010 155 817 823
36. Monitoring of wild birds for Newcastle disease virus in north Queensland, Australia. Hoque MA, Burgess GW, Karo-Karo D, Cheam AL, Skerratt LF, Prev Vet Med 2012 103 49 62
37. Phylogenetic analysis of avian paramyxovirus 1 strains isolated in Finland. Huovilainen A, Ek-Kommone C, Manvell R, Kinnunen L, Arch Virol 2001 146 1775 1785 (Pubitemid 32925920)
38. Characterization of Newcastle disease virus isolated from northern pintail (Anas acuta) in Japan. Sakai K, Sakabe G, Tani O, Watanabe Y, Jahangir A, Nakamura M, Takehara K, J Vet Med Sci 2007 69 1307 1311
39. Newcastle disease: a review of field recognition and current methods of laboratory detection. Cattoli G, Susta L, Terregino C, Brown C, J Vet Diagn Invest 2011 23 637 656
40. Characterization of newcastle disease viruses in wild and domestic birds in Luxembourg from 2006 to 2008. Snoeck CJ, Marinelli M, Charpentier E, Sausy A, Conzemius T, Losch S, Muller CP, Appl Environ Microbiol 2013 79 639 645
41. Surveillance for avirulent Newcastle disease viruses in domestic ducks (Anas platyrhynchos and Cairina moschata) at live bird markets in Eastern China and characterization of the viruses isolated. Liu X, Wang X, Wu S, Hu S, Peng Y, Xue F, Avian Pathol 2009 38 377 391
42. European flyway permeability and abmigration in Teal Anas crecca, an analysis based on ringing recoveries. Guillemain M, Sadoul N, Simon GR, Ibis 2005 147 688 696 (Pubitemid 43906484)
43. Global patterns of influenza A virus in wild birds. Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus ADME, Fouchier RAM, Science 2006 312 384 388
44. Complete genome analysis of an avian paramyxovirus type 1 strain isolated in 1994 from an asymptomatic black-headed gull (Larus ridibundus) in southern Sweden. Munir M, Linde AM, Zohari S, Stahl K, Baule C, Holm K, Engstrom B, Berg M, Avian Dis 2010 54 923 930
45. Selective isolation of Avian influenza virus (AIV) from cloacal samples containing AIV and Newcastle disease virus. El Zowalaty ME, Chander Y, Redig PT, Abd El Latif HK, El Sayed MA, Goyal SM, J Vet Diagn Invest 2011 23 330 332
46. Cocultivation of avian orthomyxoviruses and paramyxoviruses in embryonated eggs: implications for surveillance studies. Shortridge KF, King AP, Appl Environ Microbiol 1983 45 463 467 (Pubitemid 13182024)