Selection of peptide ligands for piezoelectric peptide based gas sensors arrays using a virtual screening approach

Biosensors and Bioelectronics

Volumn 52, Issue , 2014, Pages 247-254

  Pizzoni, Daniel ^a   Mascini, Marcello ^a   Lanzone, Valentina ^a   Del Carlo, Michele ^a   Di Natale, Corrado ^b   Compagnone, Dario ^a  

^a UNIVERSITY OF TERAMO   (Italy)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

Author keywords

Molecular modelling; Peptides; Quartz crystal microbalance; Sensors; Volatile organics

Indexed keywords

COMPARATIVE STUDIES; COMPUTATIONAL METHODOLOGY; GOLD NANOPARTICLES; PHYSICOCHEMICAL CHARACTERISTICS; SENSING ABILITIES; VIRTUAL SCREENING; VOLATILE COMPOUNDS; VOLATILE ORGANICS;

BINDING ENERGY; FORECASTING; GAS DETECTORS; GOLD; LIGANDS; METAL NANOPARTICLES; MOLECULAR MODELING; SENSOR ARRAYS; SENSORS; VOLATILE ORGANIC COMPOUNDS;

PEPTIDES;

2 PROPANOL; 2,3 BUTANEDIONE; ACETIC ACID ETHYL ESTER; ACETONE; ACETONITRILE; ALCOHOL; BUTYRIC ACID ETHYL ESTER; CYSTEINYLARGINYLGLUTAMINYLVALYLPHENYLALANINE; CYSTEINYLGLYCINE; CYSTEINYLISOLEUCYLGLUTAMINYLPROPYLVALINE; CYSTEINYLISOLEUCYLHISTIDINYLASPARAGINYLPROLINE; ETHYL OCTANOATE; GLUTATHIONE; GOLD NANOPARTICLE; HEX 3 EN L OL; HEXANE; ISOPENTYL ACETATE; NONANAL; OCTANAL; PEPTIDE; TERPINEN 4 OL; UNCLASSIFIED DRUG; VOLATILE AGENT;

ARTICLE; BINDING AFFINITY; BIOSENSOR; CHEMICAL STRUCTURE; COMPARATIVE STUDY; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; COVALENT BOND; GAS SENSOR ARRAY; MOLECULAR DOCKING; MOLECULAR MECHANICS; MOLECULAR MODEL; MOLECULAR WEIGHT; PHYSICAL CHEMISTRY; PIEZOELECTRICITY; QUARTZ CRYSTAL MICROBALANCE; RELIABILITY; STEREOCHEMISTRY; STUDENT T TEST; VIRTUAL REALITY;

MOLECULAR MODELLING; PEPTIDES; QUARTZ-CRYSTAL MICROBALANCE; SENSORS; VOLATILE ORGANICS;

BIOSENSING TECHNIQUES; GASES; GOLD; LIGANDS; PEPTIDE FRAGMENTS; PEPTIDES;

EID: 84884358965     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2013.08.044     Document Type: Article

References (32)

1. Aono S. Antioxidants & Redox Signaling 2012, 16(7):678-686.
2. Aryal S., B K.C.R., Dharmaraj N., Bhattarai N., Kim C.H., Kim H.Y. Spectrochimica Acta A: Molecular and Biomolecular Spectroscopy 2006, 63(1):160-163.
3. Bini A., Mascini M., Mascini M., Turner A.P.F. Biosensors and Bioelectronics 2011, 26:4411-4416.
4. Chianella I., Lotierzo M., Piletsky S.A., Tothill I.E., Chen B., Karim K., Turner A.P.F. Analytical Chemistry 2002, 74:1288-1293.
5. Compagnone D., Fusella G.C., Del Carlo M., Pittia P., Martinelli E., Tortora L., Paolesse R., Di Natale C. Biosensors and Bioelectronics 2013, 42:618-625.
6. Di Natale C., Macagnano A., Martinelli E., Paolesse R., D'Arcangelo G., Roscioni C., Finazzi-Agrò A., D'Amico A. Biosensors and Bioelectronics 2003, 18(10):1209-1218.
7. Drouvalakis K.A., Bangsaruntip S., Hueber W., Kozar L.G., Utz P.J., Dai H. Biosensors and Bioelectronics 2008, 23(10):1413-1421.
8. Elokely K.M., Doerksen R.J. Journal of Chemical Information and Modeling 2013, 53(8):1934-1945.
9. Jolliffe I.T. Principal Component Analysis 2002, Springer, New York, USA.
10. Lin Y.J., Guo H.R., Chang Y.H., Kao M.T., Wang H.H., Hong R.I. Sensors and Actuators B: Chemical 2001, 76(16):177-180.
11. Lu H.-H., Rao Y.K., Wu T.-Z., Tzeng Y.-M. Sensors and Actuators B: Chemical 2009, 137(2):741-746.
12. Lucarelli F., Tombelli S., Minunni M., Marrazza G., Mascini M. Analytica Chimica Acta 2008, 609(2):139-159.
13. Luo J., Zhang Q., Huang Y., Liu G., Zhao R. Analytica Chimica Acta 2007, 590(1):91-97.
14. Mascini M., Del Carlo M., Cozzani I., Tiscar P.G., Mpamhanga C.P., Chen B., Compagnone D. Analytical Letters 2006, 39(8):1627-1642.
15. Mascini M., Montesano C., Sergi M., Perez G., Curini R., Compagnone D. Analytica Chimica Acta 2013, 772:40-46.
16. Mascini M., Sergi M., Monti D., Del Carlo M., Compagnone D. Analytical Chemistry 2008, 80(23):9150-9156.
17. Melles E., Anderson H., Wallinder D., Shafqat J., Bergman T., Aastrup T., Jornvall H. Analytical Biochemistry 2005, 341(1):89-93.
18. Narcisi V., Mascini M., Perez G., Del Carlo M., Tiscar P.G., Yamanaka H., Compagnone D. Talanta 2011, 85:1927-1932.
19. Okada T., Yamamoto Y., Miyachi H., Karube I., Muramatsu H. Biosensors and Bioelectronics 2007, 22(7):1480-1486.
20. OpenEye Scientific Software, S.F., NM., LEXICHEM 2.1.0; SZYBKI 1.5.7; OMEGA 2.4.6; OEDOCKING 3.0.0; VIDA version 4.1.1. http://www.eyesopen.com.
21. Papaleo E., Russo L., Shaikh N., Cipolla L., Fantucci P., De Gioia L. Journal of Molecular Graphics and Modelling 2010, 28(8):834-841.
22. Perez G., Mascini M., Sergi M., Del Carlo M., Curini R., Montero-Cabrera A., Compagnone D. Journal of Proteomics and Bioinformatics 2013, 6(1):15-22.
23. Romero Guerra M., Chianella I., Piletska E.V., Karim K., Turner A.P., Piletsky S.A. Analyst 2009, 134(8):1565-1570.
24. Sankaran S., Panigrahi S., Mallik S. Biosensors and Bioelectronics 2011, 26(7):3103-3109.
25. Sankaran S., Panigrahi S., Mallik S. Sensors and Actuators B: Chemical 2011, 155(1):8-18.
26. Serra B., Gamella M., Reviejo A.J., Pingarron J.M. Analytical and Bioanalytical Chemistry 2008, 391(5):1853-1860.
27. Sousa S.F., Ribeiro A.J., Coimbra J.T., Neves R.P., Martins S.A., Moorthy N.S., Fernandes P.A., Ramos M.J. Current Medicinal Chemistry 2013, 20(18):2296-2314.
28. Tombelli S., Minunni M., Mascini M. Methods 2005, 37(1):48-56.
29. Wu T.Z. Biosensors and Bioelectronics 1999, 14(1):9-18.
30. Wu T.Z., Lo Y.R., Chan E.C. Biosensors and Bioelectronics 2001, 16(9-12):945-953.
31. Xu L., Russu W.A. Bioorganic & Medicinal Chemistry 2013, 21(2):540-546.
32. Yuriev E., Ramsland P.A. Journal of Molecular Recognition: JMR 2013, 26(5):215-239.