Probing protein-protein interaction in biomembranes using Fourier transform infrared spectroscopy

Biochimica et Biophysica Acta - Biomembranes

Volumn 1828, Issue 10, 2013, Pages 2265-2271

  Haris, Parvez I ^a  

^a DE MONTFORT UNIVERSITY   (United Kingdom)

Author keywords

Biomembrane; FTIR spectroscopy; Infrared spectroscopy; Isotope edited; Protein protein interaction

Indexed keywords

ACYLATION STIMULATING PROTEIN; ARGININE; ASPARAGINE; BACTERIORHODOPSIN; CALMODULIN; CYSTEINE; GLUTAMIC ACID; GLUTAMINE; HISTONE; LYSINE; MEMBRANE PROTEIN; PHENYLALANINE; PROTEIN PRECURSOR; PROTEIN TYROSINE KINASE; RHODOPSIN; SERINE; THREONINE PROTEINASE;

ALPHA HELIX; AMINO ACID SEQUENCE; BIOCHEMISTRY; DIFFERENCE SPECTROSCOPY; HYDRATION; INFRARED SPECTROSCOPY; ISOTOPE LABELING; MEMBRANE; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DENATURATION; PROTEIN LIPID INTERACTION; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; REVIEW; SITE DIRECTED MUTAGENESIS; TWO DIMENSIONAL SPECTROSCOPY; WATER VAPOR; CHEMISTRY; FTIR SPECTROSCOPY; ISOTOPE-EDITED; METHODOLOGY; PROTEIN BINDING; PROTEIN-PROTEIN INTERACTION;

BIOMEMBRANE; FTIR SPECTROSCOPY; INFRARED SPECTROSCOPY; ISOTOPE-EDITED; PROTEIN-PROTEIN INTERACTION;

MEMBRANE PROTEINS; PROTEIN BINDING; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 84884341984     PISSN: 00052736     EISSN: 18792642     Source Type: Journal    
DOI: 10.1016/j.bbamem.2013.04.008     Document Type: Review

References (30)

1. The Protein Data Bank www.rcsb.org (Accessed 1/11/2012)
2. E. Wallin, and G. von Heijne Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms Protein Sci. 7 1998 1029 1038 (Pubitemid 28216544)
3. P.I. Haris, and D. Chapman Does Fourier-transform infrared spectroscopy provide useful information on protein structures? Trends Biochem. Sci. 9 1992 328 333
4. A. Barth The study of protein reactions by reaction induced difference spectroscopy A. Barth, P.I. Haris, Biological and Biomedical Infrared Spectroscopy 2009 IOS Press Amsterdam 53 78
5. P.I. Haris, and F. Severcan FTIR spectroscopic characterization of protein structure in aqueous and non-aqueous media J. Mol. Catal. B Enzym. 7 1999 207 221 (Pubitemid 29408531)
6. E. Goormaghtigh, V. Cabiaux, and J.-M. Ruysschaert Secondary structure and dosage of soluble and membrane proteins by attenuated total reflection Fourier-transform infrared spectroscopy on hydrated films Eur. J. Biochem. 193 1990 409 420 (Pubitemid 20344915)
7. P.I. Haris, and D. Chapman The conformational analysis of peptides using Fourier transform IR spectroscopy Biopolymers 37 1995 251 263
8. Y. Adiguzel, P.I. Haris, and F. Severcan F. Severcan, P.I. Haris, Vibrational Spectroscopy in Diagnosis and Screening 2012 IOS Press 53 108
9. A. Barth, and C. Zscherp What vibrations tell us about proteins Q. Rev. Biophys. 35 2002 369 430 (Pubitemid 36207229)
10. J.A. Hering, and P.I. Haris FTIR spectroscopy for analysis of protein secondary structure J.A. Hering, P.I. Haris, Advances in Biomedical Spectroscopy - Volume 2 - Biological and Biomedical Spectroscopy 2009 IOS Press Amsterdam 129 167
11. M. Jackson, P.I. Haris, and D. Chapman Fourier transform infrared spectroscopic studies of calcium-binding proteins Biochemistry 30 1991 9681 9686
12. P.I. Haris, and D. Chapman Fourier transform infrared spectroscopic investigation of rhodopsin structure and its comparison with bacteriorhodopsin Biochim. Biophys. Acta 995 1989 160 167 (Pubitemid 19088372)
13. S. Krimm, and A.M. Dwivedi The infrared spectrum of purple membrane: clue to proton conduction mechanism? Science 216 1982 407 408
14. K.J. Rothschild, and N.A. Clark Anomalous amide I infrared absorption of purple membrane Science 204 1979 311 312 (Pubitemid 9159645)
15. P.I. Haris, and D. Chapman Fourier transform infrared spectra of the polypeptide alamethicin and a possible structural similarity with bacteriorhodopsin Biochim. Biophys. Acta 943 1988 375 380
16. E.-L. Karjalainen, and A. Barth Vibrational coupling between helices influences the amide I infrared absorption of proteins. Application to bacteriorhodopsin and rhodopsin J. Phys. Chem. B 116 2012 4448 4456
17. J.K. Lanyi, and B. Schobert Structural changes in the L photointermediate of bacteriorhodopsin J. Mol. Biol. 365 2007 1379 1392 (Pubitemid 46048848)
18. P.I. Haris, and D. Chapman Membrane protein conformation as determined by FT-IR spectroscopy Biochem. Soc. Trans. 17 1989 161 162 (Pubitemid 19052511)
19. M. van de Weert, P.I. Haris, W.E. Hennink, and D.J.A. Crommelin Fourier transform infrared spectrometric analysis of protein conformation: effect of sampling method and stress factors Anal. Biochem. 297 2001 160 169 (Pubitemid 32989346)
20. K.-M. Pan, M. Baldwin, J. Nguyen, M. Gasset, A. Serban, D. Groth, I. Mehlhorn, Z. Huang, R.J. Fletterick, F.E. Cohen, and S.B. Prusiner Conversion of α-helices into β-sheet features in the formation of the scrapie prion protein Proc. Natl. Acad. Sci. U. S. A. 90 1993 10962 10966
21. A. Kariakin, D. Davydov, J.A. Peterson, and C. Jung A new approach to the study of protein-protein interaction by FTIR: complex formation between cytochrome P450BM-3 heme domain and FMN reductase domain Biochemistry 41 2002 13514 13525 (Pubitemid 35332687)
22. S. Nishimura, J. Sasaki, H. Kandori, T. Matsuda, Y. Fukada, and A. Maeda Structural changes in the peptide backbone in complex formation between activated rhodopsin and transducin studied by FTIR spectroscopy Biochemistry 35 1996 13267 13271 (Pubitemid 26349417)
23. S. Nishimura, H. Kandori, and A. Maeda Interaction between photoactivated rhodopsin and the C-terminal peptide of transducin alpha-subunit studied by FTIR spectroscopy Biochemistry 37 1998 15816 15824 (Pubitemid 28524753)
24. K. Fahmy Binding of transducin and transducin-derived peptides to rhodopsin studies by attenuated total reflection-Fourier transform infrared difference spectroscopy Biophys. J. 75 1998 1306 1318 (Pubitemid 28397600)
25. K.J. Rothschild FTIR difference spectroscopy of bacteriorhodopsin: toward a molecular model J. Bioenerg. Biomembr. 24 1992 147 167
26. Y. Neehaul, Y. Chen, C. Werner, J.A. Fee, B. Ludwig, and P. Hellwig Electrochemical and infrared spectroscopic analysis of the interaction of the Cu(A) domain and cytochrome c(552) from Thermus thermophilus Biochim. Biophys. Acta 1817 2012 1950 1954
27. 15N labeling for studying protein-protein interactions using Fourier transform infrared spectroscopy Biochemistry 31 1992 6279 6284
28. Mannitol and HPr of the Escherichia coli phosphotransferase system J. Biol. Chem. 277 2002 42289 42298 (Pubitemid 35257549)
29. T. Li, and T. Arakawa Applications of isotope-edited FTIR spectroscopy in the study of protein-protein interactions A. Barth, P.I. Haris, Biological and Biomedical Infrared Spectroscopy 2009 IOS Press 261 271
30. R. Vogel, S. Martell, M. Mahalingam, M. Engelhard, and F. Siebert Interaction of a G protein-coupled receptor with a G protein-derived peptide induces structural changes in both peptide and receptor: a fourier-transform infrared study using isotopically labeled peptides J. Mol. Biol. 366 2007 1580 1588 (Pubitemid 46215604)