What has high-throughput sequencing ever done for us?

Nature Reviews Microbiology

Volumn 11, Issue 10, 2013, Pages 664-665

  Parkhill, Julian ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS ANTHRACIS; BACTERIAL GENOME; BACTERIAL STRAIN; CASE CONTROL STUDY; DISEASE ASSOCIATION; GENE SEQUENCE; GENETIC PROCEDURES; GENETIC VARIABILITY; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MAJOR CLINICAL STUDY; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS INFECTION; MICROBIOME; NON INSULIN DEPENDENT DIABETES MELLITUS; NONHUMAN; PORPHYROMONAS GINGIVALIS; PRIORITY JOURNAL; SHORT SURVEY; STRAIN DIFFERENCE; WHOLE GENOME SEQUENCING;

BACILLUS ANTHRACIS; BORDETELLA; GENETIC VARIATION; GENOME, BACTERIAL; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOME; PORPHYROMONAS GINGIVALIS; UROPATHOGENIC ESCHERICHIA COLI;

EID: 84884281593     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro3112     Document Type: Short Survey

References (10)

1. Nelson, K. E. et al. Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83. J. Bacteriol. 185, 5591-5601 (2003). (Pubitemid 37082416)
2. Read, T. D. et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature 423, 81-86 (2003). (Pubitemid 36569586)
3. Welch, R. A. et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl Acad. Sci. USA 99, 17020-17024 (2002). (Pubitemid 36034091)
4. Read, T. D. et al. Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science 296, 2028-2033 (2002). (Pubitemid 34627526)
5. Parkhill, J. et al. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nature Genet. 35, 32-40 (2003). (Pubitemid 37048593)
6. Tyson, G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43 (2004). (Pubitemid 38332350)
7. McLean, J. S. et al. Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform. Genome Res. 23, 867-877 (2013).
8. He, M. et al. Emergence and global spread of epidemic healthcare-associated Clostridium difficile. Nature Genet. 45, 109-113 (2013).
9. Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60 (2012).
10. Harris, S. R. et al. Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. Lancet Infect. Dis. 13, 130-136 (2013).