Bacterially induced weathering of ultramafic rock and its implications for phytoextraction

Applied and Environmental Microbiology

Volumn 79, Issue 17, 2013, Pages 5094-5103

  Becerra Castro, Cristina ^a   Kidd, Petra ^a   Kuffner, Melanie ^b   Prieto Fernández, Ángeles ^a   Hann, Stephan ^c   Monterroso, Carmela ^d   Sessitsch, Angela ^b   Wenzel, Walter ^c   Puschenreiter, Markus ^c  

^a Santiago de Compostela   (Spain)

^b AIT AUSTRIAN INSTITUTE OF TECHNOLOGY   (Austria)

^c UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^d UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL STRAINS; BIOMASS PRODUCTIONS; HYPERACCUMULATOR PLANT; INDOLEACETIC ACID; METAL EXTRACTIONS; SERPENTINE MINERALS; SIDEROPHORE PRODUCTION; SOIL PLANT SYSTEMS;

BIOCHEMISTRY; MANGANESE; NICKEL; SERPENTINE; SOILS;

WEATHERING;

BIOMASS; EXPERIMENTAL STUDY; EXTRACTION METHOD; FRACTIONATION; HYPERACCUMULATION; INOCULATION; METABOLITE; MICROBIAL COMMUNITY; NICKEL; OXALATE; TRACE METAL; ULTRAMAFIC ROCK; WEATHERING PROFILE;

EID: 84884274446     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00402-13     Document Type: Article

References (46)

1. Kidd PS, Barceló J, Bernal MP, Navari-Izzo F, Poschenrieder C, Shilev S, Clemente R, Monterroso C. 2009. Trace element behaviour at the root-soil interface: implications in phytoremediation. Environ. Exp. Bot. 67:243-259.
2. Weyens N, van der Lelie D, Taghavi S, Newman L, Vangronsveld J. 2009. Exploiting plant-microbe partnerships to improve biomass production and remediation. Trends Biotechnol. 27:591-598.
3. Gadd GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology 156:609-643.
4. Vessey J. 2003. Plant growth promoting rhizobacteria as biofertilizers. Plant Soil 255:571-586.
5. Calvaruso C, Turpault MP, Frey-Klett P. 2006. Root-associated bacteria contribute to mineral weathering and to mineral nutrition in trees: a budgeting analysis. Appl. Environ. Microbiol. 72:1258-1266.
6. Whiting SN, de Souza MP, Terry N. 2001. Rhizosphere bacteria mobilize Zn for hyperaccumulation by Thlaspi caerulescens. Environ. Sci. Technol. 35:3144-3150.
7. Kuffner M, Puschenreiter M, Wieshammer G, Gorfer M, Sessitsch A. 2008. Rhizosphere bacteria affect growth and metal uptake of heavy metal accumulating willows. Plant Soil 304:35-44.
8. Becerra-Castro C, Prieto-Fernández Á, Álvarez-López V, Cabello-Conejo MI, Acea MJ, Kidd PS, Monterroso C. 2011. Nickel solubilizing capacity and characterization of rhizobacteria isolated from hyperaccumulating and non-hyperaccumulating subspecies of Alyssum serpyllifolium. Int. J. Phytoremediat. 13:229-244.
9. Abou-Shanab RAI, Angle JS, Delorme TA, Chaney RL, van Berkum P, Moawad H, Ghanem K, Ghozlan HA. 2003. Rhizobacterial effects on nickel extraction from soil and uptake by Alyssum murale. New Phytol. 158:219-224.
10. Ehrlich HL. 1998. Geomicrobiology: its significance for geology. Earth Sci. Rev. 45:45-60.
11. Amir H, Pineau R. 2003. Release of Ni and Co by microbial activity in New Caledonian ultramafic soils. Can. J. Microbiol. 49:288-293.
12. Quantin C, Becquer T, Rouiller JH, Berthelin J. 2002. Redistribution of metals in a New Caledonia ferralsol after microbial weathering. Soil Sci. Soc. Am. J. 66:1797-1804.
13. Li WC, Ye ZH, Wong MH. 2010. Metal mobilization and production of short-chain organic acids by rhizosphere bacteria associated with a Cd/Zn hyperaccumulating plant, Sedum alfredii. Plant Soil 326:453-467.
14. Kuffner M, De Maria S, Puschenreiter M, Fallmann K, Wieshammer G, Gorfer M, Strauss J, Rivelli AR, Sessitsch A. 2010. Culturable bacteria from Zn- and Cd-accumulating Salix caprea with differential effects on plant growth and heavy metal availability. J. Appl. Microbiol. 108:1471- 1484.
15. Abou-Shanab RAI, Angle JS, Chaney RL. 2006. Bacterial inoculants affecting nickel uptake by Alyssum murale from low, moderate and high Ni soils. Soil Biol. Biochem. 38:2882-2889.
16. Ma Y, Rajkumar M, Freitas H. 2009. Improvement of plant growth and nickel uptake by nickel resistant-plant-growth promoting bacteria. J. Hazard. Mater. 166:1154-1161.
17. Mergeay M, Nies D, Schlegel HG, Gerits J, Charles P, Van Gijsegem F. 1985. Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J. Bacteriol. 162:328-334.
18. Schlegel HG, Daltwasser H, Gottschal G. 1961. Ein Sumbersverfahren zur Kultur wasserstoffoxidierender Bakterien: Wachstum physiologische Untersuchungen. Arch. Microbiol. 38:87-98.
19. Jaitz L, Mueller B, Koellensperger G, Huber D, Oburger E, Puschenreiter M, Hann S. 2011. LC-MS analysis of low molecular weight organic acids derived from root exudation. Anal. Bioanal. Chem. 400:2587-2596.
20. Jaitz L, Siegl K, Eder R, Rak G, Abranko L, Koellensperger G, Hann S. 2010. LC-MS/MS analysis of phenols for classification of red wine according to geographic origin, grape variety and vintage. Food Chem. 122:366- 372.
21. Zeien H, Brümmer GW. 1989. Chemische Extraktionen zur Bestimmung von Schwermetallbindungsformen in Böden. Mitteilgn. Dtsch. Bodenkundl. Gesellsch. 59:505-510.
22. Wenzel WW, Bunkowski M, Puschenreiter M, Horak O. 2003. Rhizosphere characteristics of indigenously growing nickel hyperaccumulator and excluder plants on serpentine soil. Environ. Pollut. 123:131-138.
23. Fitz WJ, Wenzel WW, Zhang H, Nurmi J, Stipek K, Fischerova Z, Schweiger P, Köllensperger G, Ma LQ, Stingeder G. 2003. Rhizosphere characteristics of the arsenic hyperaccumulator Pteris vittata L. and monitoring of phytoremoval efficiency. Environ. Sci. Technol. 37:5008-5014.
24. Quantin C, Ettler V, Garnier J, Scaronebek O. 2008. Sources and extractibility of chromium and nickel in soil profiles developed on Czech serpentinites. C. R. Geosci. 340:872-882.
25. Caillaud J, Proust D, Philippe S, Fontaine C, Fialin M. 2009. Trace metals distribution from a serpentinite weathering at the scales of the weathering profile and its related weathering microsystems and clay minerals. Geoderma 149:199-208.
26. Kalinowski BE, Liermann LJ, Brantley SL, Barnes A, Pantano CG. 2000. X-ray photoelectron evidence for bacteria-enhanced dissolution of hornblende. Geochem. Cosmochim. Acta 64:1331-1343.
27. Liermann LJ, Kalinowski BE, Brantley S, Ferry JG. 2000. Role of bacterial siderophores in dissolution of hornblende. Geochem. Cosmochim. Acta 64:587-602.
28. Banfield JF, Barker WW, Welch SA, Taunton A. 1999. Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere. Proc. Natl. Acad. Sci. U. S. A. 96:3404-3411.
29. Schalk IJ, Hannauer M, Braud A. 2011. New roles for bacterial siderophores in metal transport and tolerance. Environ. Microbiol. 13:2844- 2854.
30. Dhungana S, Anthony CR, Hersman L. 2007. Ferrihydrite dissolution by pyridine-2,6-bis(monothiocarboxylic acid) and hydrolysis products. Geochem. Cosmochim. Acta 71:5651-5660.
31. Ullman WJ, Kirchman DL, Welch RM, Vandevivere P. 1996. Laboratory evidence for microbially mediated silicate mineral dissolution in nature. Chem. Geol. 132:11-17.
32. Antić-Mladenović S, Rinklebe J, Frohne T, Stärk H-J, Wennrich R, Tomić Z, Licina V. 2011. Impact of controlled redox conditions on nickel in a serpentine soil. J. Soils Sediments 11:406-415.
33. Alves S, Trancoso MA, Gonçalves MDLS, Correia dos Santos MM. 2011. A nickel availability study in serpentinised areas of Portugal. Geoderma 164:155-163.
34. Barker WW, Welch SA, Banfield JF. 1997. Biogeochemical weathering of silicate minerals. Rev. Mineral Geochem. 35:391-428.
35. Liermann LJ, Barnes A, Kalinowski BE, Zhou X, Brantley S. 2000. Microenvironments of pH in biofilms grown on dissolving silicate surfaces. Chem. Geol. 171:1-16.
36. Stone AT. 1987. Microbial metabolites and the reductive dissolution of manganese oxides: oxalate and pyruvate. Geochem. Cosmochim. Acta 51:919-925.
37. Pérez-Benito JF, Arias C, Amat E. 1996. A kinetic study of the reduction of colloidal manganese dioxide by oxalic acid. J. Colloid Interface Sci. 177:288-297.
38. Banerjee D, Nesbitt HW. 1999. XPS study of reductive dissolution of birnessite by oxalate: rates and mechanistic aspects of dissolution and redox processes. Geochem. Cosmochim. Acta 63:3025-3038.
39. Duckworth O, Sposito G. 2007. Siderophore-promoted dissolution of synthetic and biogenic layer-type Mn oxides. Chem. Geol. 242:497- 508.
40. Knight B, Zhao FJ, McGrath SP, Shen ZG. 1997. Zinc and cadmium uptake by the hyperaccumulator Thlaspi caerulescens in contaminated soils and its effects on the concentration and chemical speciation of metals in soil solution. Plant Soil 197:71-78.
41. McGrath SP, Shen ZG, Zhao FJ. 1997. Heavy metal uptake and chemical changes in the rhizosphere of Thlaspi caerulescens and Thlaspi ochroleucum grown in contaminated soils. Plant Soil 188:153-159.
42. Puschenreiter M, Schnepf A, Millán IM, Fitz WJ, Horak O, Klepp J, Schrefl T, Lombi E, Wenzel WW. 2005. Changes of Ni biogeochemistry in the rhizosphere of the hyperaccumulator Thlaspi goesingense. Plant Soil 271:205-218.
43. Becerra-Castro C, Monterroso C, Garcia-Leston M, Prieto-Fernandez A, Acea MJ, Kidd PS. 2009. Rhizosphere microbial densities and trace metal tolerance of the nickel hyperaccumulator Alyssum serpyllifolium subsp. lusitanicum. Int. J. Phytoremediat. 11:525-541.
44. De Maria S, Rivelli AR, Kuffner M, Sessitsch A, Wenzel WW, Gorfer M, Strauss J, Puschenreiter M. 2011. Interactions between accumulation of trace elements and macronutrients in Salix caprea after inoculation with rhizosphere microorganisms. Chemosphere 84:1256-1261.
45. Baker AJM, Brooks R. 1989. Terrestrial higher plants which hyperaccumulate metallic elements: a review of their distribution, ecology and phytochemistry. Biorecovery 1:81-126.
46. Diezlázaro J, Kidd PS, Monterroso C. 2006. A phytogeochemical study of the Trás-os-Montes region (NE Portugal): possible species for plantbased soil rernediation technologies. Sci. Total Environ. 354:265-277.