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Volumn 8, Issue 9, 2013, Pages

In Silico Approach for Predicting Toxicity of Peptides and Proteins

Author keywords

[No Author keywords available]

Indexed keywords

ANTICANCER PEPTIDE; ANTIVIRAL PEPTIDE; ASPARAGINE; CELL PENETRATING PEPTIDE; CYSTEINE; DIPEPTIDE; HISTIDINE; PEPTIDE; POLYPEPTIDE ANTIBIOTIC AGENT; PROLINE; PROTEIN; TUMOR HOMING PEPTIDE; UNCLASSIFIED DRUG;

EID: 84884141339     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0073957     Document Type: Article
Times cited : (1332)

References (30)
  • 2
    • 84877648786 scopus 로고    scopus 로고
    • Peptides as targeting probes against tumor vasculature for diagnosis and drug delivery
    • Li ZJ, Cho CH, (2012) Peptides as targeting probes against tumor vasculature for diagnosis and drug delivery. J Transl Med 10Suppl 1: S1.
    • (2012) J Transl Med , vol.10
    • Li, Z.J.1    Cho, C.H.2
  • 3
    • 84864631153 scopus 로고    scopus 로고
    • Cell-penetrating peptides: classes, origin, and current landscape
    • Milletti F, (2012) Cell-penetrating peptides: classes, origin, and current landscape. Drug Discov Today 17: 850-860.
    • (2012) Drug Discov Today , vol.17 , pp. 850-860
    • Milletti, F.1
  • 4
    • 78449236736 scopus 로고    scopus 로고
    • Antimicrobial peptides: primeval molecules or future drugs?
    • Peters BM, Shirtliff ME, Jabra-Rizk MA, (2010) Antimicrobial peptides: primeval molecules or future drugs? PLoS Pathog 6: e1001067.
    • (2010) PLoS Pathog , vol.6
    • Peters, B.M.1    Shirtliff, M.E.2    Jabra-Rizk, M.A.3
  • 5
    • 84885390747 scopus 로고    scopus 로고
    • Cancer treatment using peptides: current therapies and future prospects
    • Thundimadathil J, (2012) Cancer treatment using peptides: current therapies and future prospects. J Amino Acids 2012: 967347.
    • (2012) J Amino Acids , vol.2012 , pp. 967347
    • Thundimadathil, J.1
  • 7
    • 77950914950 scopus 로고    scopus 로고
    • Development of peptides as potential drugs for cancer therapy
    • Li ZJ, Cho CH, (2010) Development of peptides as potential drugs for cancer therapy. Curr Pharm Des 16: 1180-1189.
    • (2010) Curr Pharm Des , vol.16 , pp. 1180-1189
    • Li, Z.J.1    Cho, C.H.2
  • 8
    • 78649852683 scopus 로고    scopus 로고
    • Chemical modifications designed to improve peptide stability: incorporation of non-natural amino acids, pseudo-peptide bonds, and cyclization
    • Gentilucci L, De Marco R, Cerisoli L, (2010) Chemical modifications designed to improve peptide stability: incorporation of non-natural amino acids, pseudo-peptide bonds, and cyclization. Curr Pharm Des 16: 3185-3203.
    • (2010) Curr Pharm Des , vol.16 , pp. 3185-3203
    • Gentilucci, L.1    De Marco, R.2    Cerisoli, L.3
  • 9
    • 84862768277 scopus 로고    scopus 로고
    • Extraordinary metabolic stability of peptides containing alpha-aminoxy acids
    • Chen F, Ma B, Yang ZC, Lin G, Yang D, (2012) Extraordinary metabolic stability of peptides containing alpha-aminoxy acids. Amino Acids 43: 499-503.
    • (2012) Amino Acids , vol.43 , pp. 499-503
    • Chen, F.1    Ma, B.2    Yang, Z.C.3    Lin, G.4    Yang, D.5
  • 10
    • 33748254730 scopus 로고    scopus 로고
    • Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
    • Saha S, Raghava GP, (2006) Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 65: 40-48.
    • (2006) Proteins , vol.65 , pp. 40-48
    • Saha, S.1    Raghava, G.P.2
  • 11
    • 0036137241 scopus 로고    scopus 로고
    • ProPred: prediction of HLA-DR binding sites
    • Singh H, Raghava GP, (2001) ProPred: prediction of HLA-DR binding sites. Bioinformatics 17: 1236-1237.
    • (2001) Bioinformatics , vol.17 , pp. 1236-1237
    • Singh, H.1    Raghava, G.P.2
  • 12
    • 33947505235 scopus 로고    scopus 로고
    • A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes
    • Bhasin M, Raghava GP, (2007) A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes. J Biosci 32: 31-42.
    • (2007) J Biosci , vol.32 , pp. 31-42
    • Bhasin, M.1    Raghava, G.P.2
  • 13
    • 77957984965 scopus 로고    scopus 로고
    • Identification of conformational B-cell Epitopes in an antigen from its primary sequence
    • Ansari HR, Raghava GP, (2010) Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Res 6: 6.
    • (2010) Immunome Res , vol.6 , pp. 6
    • Ansari, H.R.1    Raghava, G.P.2
  • 14
    • 47649130438 scopus 로고    scopus 로고
    • Predicting linear B-cell epitopes using string kernels
    • El-Manzalawy Y, Dobbs D, Honavar V, (2008) Predicting linear B-cell epitopes using string kernels. J Mol Recognit 21: 243-255.
    • (2008) J Mol Recognit , vol.21 , pp. 243-255
    • El-Manzalawy, Y.1    Dobbs, D.2    Honavar, V.3
  • 17
    • 38949127261 scopus 로고    scopus 로고
    • BTXpred: prediction of bacterial toxins
    • Saha S, Raghava GP, (2007) BTXpred: prediction of bacterial toxins. In Silico Biol 7: 405-412.
    • (2007) In Silico Biol , vol.7 , pp. 405-412
    • Saha, S.1    Raghava, G.P.2
  • 18
    • 37249045159 scopus 로고    scopus 로고
    • Prediction of neurotoxins based on their function and source
    • Saha S, Raghava GP, (2007) Prediction of neurotoxins based on their function and source. In Silico Biol 7: 369-387.
    • (2007) In Silico Biol , vol.7 , pp. 369-387
    • Saha, S.1    Raghava, G.P.2
  • 23
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
    • Xiao X, Shao S, Ding Y, Huang Z, Chou KC, (2006) Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids 30: 49-54.
    • (2006) Amino Acids , vol.30 , pp. 49-54
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chou, K.C.5
  • 24
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    • Xiao X, Wang P, Chou KC, (2009) GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes. J Comput Chem 30: 1414-1423.
    • (2009) J Comput Chem , vol.30 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 25
    • 84875174578 scopus 로고    scopus 로고
    • In silico approaches for designing highly effective cell penetrating peptides
    • Gautam A, Chaudhary K, Kumar R, Sharma A, Kapoor P, et al. (2013) In silico approaches for designing highly effective cell penetrating peptides. J Transl Med 11: 74.
    • (2013) J Transl Med , vol.11 , pp. 74
    • Gautam, A.1    Chaudhary, K.2    Kumar, R.3    Sharma, A.4    Kapoor, P.5
  • 26
    • 33745622868 scopus 로고    scopus 로고
    • Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments
    • Vacic V, Iakoucheva LM, Radivojac P, (2006) Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics 22: 1536-1537.
    • (2006) Bioinformatics , vol.22 , pp. 1536-1537
    • Vacic, V.1    Iakoucheva, L.M.2    Radivojac, P.3
  • 27
    • 33747823564 scopus 로고    scopus 로고
    • MEME: discovering and analyzing DNA and protein sequence motifs
    • Bailey TL, Williams N, Misleh C, Li WW, (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34: W369-373.
    • (2006) Nucleic Acids Res , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 28
    • 0012256376 scopus 로고    scopus 로고
    • Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations
    • Lauemoller SL, Holm A, Hilden J, Brunak S, Holst Nissen M, et al. (2001) Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations. Tissue Antigens 57: 405-414.
    • (2001) Tissue Antigens , vol.57 , pp. 405-414
    • Lauemoller, S.L.1    Holm, A.2    Hilden, J.3    Brunak, S.4    Holst Nissen, M.5
  • 29
    • 44649132068 scopus 로고    scopus 로고
    • TAPPred prediction of TAP-binding peptides in antigens
    • Bhasin M, Lata S, Raghava GP, (2007) TAPPred prediction of TAP-binding peptides in antigens. Methods Mol Biol 409: 381-386.
    • (2007) Methods Mol Biol , vol.409 , pp. 381-386
    • Bhasin, M.1    Lata, S.2    Raghava, G.P.3
  • 30
    • 84885391081 scopus 로고    scopus 로고
    • Computational approach for designing tumor homing peptides
    • Sharma A, Kapoor P, Gautam A, Chaudhary K, Kumar R, et al. (2013) Computational approach for designing tumor homing peptides. Sci Rep 3: 1607.
    • (2013) Sci Rep , vol.3 , pp. 1607
    • Sharma, A.1    Kapoor, P.2    Gautam, A.3    Chaudhary, K.4    Kumar, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.