High resolution 3D mapping of soil organic carbon in a heterogeneous agricultural landscape

Geoderma

Volumn 213, Issue , 2014, Pages 296-311

  Lacoste, Marine ^a   Minasny, Budiman ^b   McBratney, Alex ^b   Michot, Didier ^a,c   Viaud, Valérie ^a   Walter, Christian ^a,c  

^a AGROCAMPUS OUEST   (France)

^b UNIVERSITY OF SYDNEY   (Australia)

^c UNIVERSITÉ EUROPÉENNE DE BRETAGNE   (France)

Author keywords

3D mapping; Data mining; Depth functions; LiDAR DEM; Soil bulk density; Soil organic carbon

Indexed keywords

3-D MAPPING; AGRICULTURAL LANDSCAPES; DIGITAL ELEVATION MODEL; LATIN HYPERCUBE SAMPLING METHODS; LIGHT DETECTION AND RANGING; SOIL BULK DENSITY; SOIL ORGANIC CARBON; STRATIFIED RANDOM SAMPLING;

CALIBRATION; CARBON; DATA MINING; FORECASTING; FORESTRY; MAPPING; MEAN SQUARE ERROR; OPTICAL RADAR; SOIL TESTING; THREE DIMENSIONAL; WOODEN FENCES;

SOILS;

AGRICULTURAL ECOSYSTEM; AGRICULTURAL LAND; BULK DENSITY; CARBON SEQUESTRATION; DATA MINING; DIGITAL ELEVATION MODEL; ECOSYSTEM FUNCTION; HETEROGENEITY; HUMAN ACTIVITY; LIDAR; SAMPLING; SOIL CARBON; SOIL HORIZON; SOIL ORGANIC MATTER; THREE-DIMENSIONAL MODELING;

FRANCE;

EID: 84884128504     PISSN: 00167061     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.geoderma.2013.07.002     Document Type: Article

References (65)

1. Aïchi H., Fouad Y., Walter C., Viscarra Rossel R.A., Chabaane Z.L., Sanaa M. Regional predictions of soil organic carbon content from spectral reflectance measurements. Biosystems Engineering 2009, 104:442-446.
2. Arrouays D., Daroussin J., Kicin J.L., Hassika P. Improving topsoil carbon storage prediction using a digital elevation model in temperate forest soils of France. Soil Science 1998, 163:103-108.
3. Arrouays D., Balesdent J., Germon J.C., Jayet P.A., Soussana J.F., Stengel P. Contribution à la lutte contre l'effet de serre: Stocker du carbone dans les sols agricoles de France? Expertise Scientifique Collective 2002, INRA, Paris, (332 pp.).
4. Berhe A.A. Decomposition of organic substrates at eroding vs. depositional landform positions. Plant and Soil 2012, 350:261-280.
5. Beven K.J., Kirkby M.J. A physically based, variable contributing area model of basin hydrology. Hydrological Sciences Journal 1979, 24:43-69.
6. Bishop T.F.A., McBratney A.B., Laslett G.M. Modelling soil attribute depth functions with equal-area quadratic smoothing splines. Geoderma 1999, 91:27-45.
7. Bonijoly D., Perrin J., Truffert C., Asfirne F. Couverture géophysique aéroportée du Massif armoricain 1999, (Rap. BRGM R 40471. 75 pp.).
8. Brus D.J., Kempen B., Heuvelink G.B.M. Sampling for validation of digital soil maps. European Journal of Soil Science 2011, 62:394-407.
9. Burel F., Baudry J. Landscape Ecology: Concepts, Methods and Applications 2003, Science Publ., Enfield, NH.
10. Chantraine, J., Rabu, D., Béchennec, F., 2002. Carte géologique numérique à 1:250 000 du Massif armoricain. Version 1.1., BRGM (Bureau de Recherches Géologiques et Minières).
11. De Vos B., Van Meirvenne M., Quataert P., Deckers J., Muys B. Predictive quality of pedotransfer functions for estimating SBD of forest soils. Soil Science Society of America Journal 2005, 69:500-510.
12. Doetterl S., Six J., Van Wesemael B., Van Oost K. Carbon cycling in eroding landscapes: geomorphic controls on soil organic C pool composition and C stabilization. Global Change Biology 2012, 18:2218-2232.
13. Florinsky I.V., Eilers R.G., Manning G.R., Fuller L.G. Prediction of soil properties by digital terrain modelling. Environmental Modelling & Software 2002, 17:295-311.
14. Follain S. Effet du réseau bocage sur l'organisation des sol. Redisribution des sols et stockage en carbone organique 2006, (Thesis), E.N.S.A.R., Rennes, France, (241 pp.).
15. Follain S., Minasny B., McBratney A.B., Walter C. Simulation of soil thickness evolution in a complex agricultural landscape at fine spatial and temporal scales. Geoderma 2006, 133:71-86.
16. Follain S., Walter C., Legout A., Lemercier B., Dutin G. Induced effects of hedgerow networks on soil organic carbon storage within an agricultural landscape. Geoderma 2007, 142:80-95.
17. Follain S., Walter C., Bonte P., Marguerie D., Lefevre I. A-horizon dynamics in a historical hedged landscape. Geoderma 2009, 150:334-343.
18. Fontaine S., Barot S., Barre P., Bdioui N., Mary B., Rumpel C. Stability of organic carbon in deep soil layers controlled by fresh carbon supply. Nature 2007, 450:277-U10.
19. Forman R.T.T. Some general principles of landscape and regional ecology. Landscape Ecology 1995, 10:133-142.
20. Freeman T.G. Calculating catchment-area with divergent flow based on a regular grid. Computers & Geosciences 1991, 17:413-422.
21. Gallant J.C., Dowling T.I. A multiresolution index of valley bottom flatness for mapping depositional areas. Water Resources Research 2003, 39:1-13.
22. Grace J. Understanding and managing the global carbon cycle. Journal of Ecology 2004, 92:189-202.
23. Grimm R., Behrens T., Marker M., Elsenbeer H. Soil organic carbon concentrations and stocks on Barro Colorado Island - digital soil mapping using random forests analysis. Geoderma 2008, 146:102-113.
24. IUSS Working Group WRB World Reference Base for Soil Resources 2006, First Update 2007. World Soil Resources Reports No. 103 2007, FAO, Rome.
25. Jenny H. Factors of soil formation: A system of Quantitative Pedology 1941, McGraw-Hill, New-York, (191 pp.).
26. Johnston C.A., et al. Carbon cycling in soil. Frontiers in Ecology and the Environment 2004, 2:522-528.
27. Kempen B., Brus D.J., Stoorvogel J.J. Three-dimensional mapping of soil organic matter content using soil type-specific depth functions. Geoderma 2011, 162:107-123.
28. Kheir R.B., et al. Predictive mapping of soil organic carbon in wet cultivated lands using classification-tree based models: the case study of Denmark. Journal of Environmental Management 2010, 91:1150-1160.
29. Kravchenko A.N., Robertson G.P., Hao X., Bullock D.G. Management practice effects on surface total carbon: differences in spatial variability patterns. Agronomy Journal 2006, 98:1559-1568.
30. Kravchenko A.N., Robertson G.R., Snap S.S., Smucker A.J.M. Using information about spatial variability to improve estimates of total soil carbon. Agronomy Journal 2006, 98:823-829.
31. Lacoste M. Evolution des sols à l'échelle du paysage sous des conditions de changement climatique et de structure du paysage 2012, (PhD thesis), Agrocampus-Ouest, Rennes, (243 pp.).
32. Lacoste M., Lemercier B., Walter C. Regional mapping of soil parent material by machine learning based on point data. Geomorphology 2011, 133:90-99.
33. Lagacherie P., McBratney A., Voltz M. Digital soil mapping - an introductory perspective. Developments in Soil Science 2007, Elsevier, Amsterdam. A.E. Hartemink, A. McBratney (Eds.).
34. Lal R., Pimentel D. Soil erosion: a carbon sink or source?. Science 2008, 319:1040-1042.
35. Lemercier B., Lacoste M., Loum M., Walter C. Extrapolation at regional scale of local soil knowledge using boosted classification trees: a two-step approach. Geoderma 2011, 171:75-84.
36. Lin L.I.-K. A concordance correlation coefficient to evaluate reproducibility. Biometrics 1989, 45:255-268.
37. Lin L.I.-K. A note on the concordance correlation coefficient. Biometrics 2000, 56:324-325.
38. Malone B.P., McBratney A.B., Minasny B., Laslett G.M. Mapping continuous depth functions of soil carbon storage and available water capacity. Geoderma 2009, 154:138-152.
39. Malone B.P., McBratney A.B., Minasny B. Empirical estimates of uncertainty for mapping continuous depth functions of soil attributes. Geoderma 2011, 160:614-626.
40. Martin M.P., et al. Optimizing pedotransfer functions for estimating SBD using boosted regression trees. Soil Science Society of America Journal 2009, 73:485-493.
41. McBratney A.B., Santos M.L.M., Minasny B. On digital soil mapping. Geoderma 2003, 117:3-52.
42. Meersmans J., et al. Changes in organic carbon distribution with depth in agricultural soils in northern Belgium, 1960-2006. Global Change Biology 2009, 15:2739-2750.
43. Merot P., et al. Testing a climato-topographic index for predicting wetlands distribution along an European climate gradient. Ecological Modelling 2003, 163:51-71.
44. Minasny B., McBratney A.B. A conditioned Latin hypercube method for sampling in the presence of ancillary information. Computers & Geosciences 2006, 32:1378-1388.
45. Mishra U., et al. Predicting Soil organic carbon stock using profile depth distribution functions and ordinary kriging. Soil Science Society of America Journal 2009, 73:614-621.
46. Mishra U., Lal R., Liu D.S., Van Meirvenne M. Predicting the spatial variation of the soil organic carbon pool at a regional scale. Soil Science Society of America Journal 2010, 74:906-914.
47. Moore I.D., Gessler P.E., Nielsen G.A., Peterson G.A. Soil attribute prediction using terrain analysis. Soil Science Society of America Journal 1993, 57:1548.
48. O'Callaghan J.F., Mark D.M. The extraction of drainage networks from digital elevation data. Computer Vision, Graphics and Image Processing 1984, 28:323-344.
49. Quinlan J.R. Learning with continuous classes. Proceedings of the 5th Australian Joint Conference on Artificial Intelligence 1992, 343-348.
50. Quinlan J.R. Combining instance-based and model-based learning. Proceedings of the Tenth International Conference on Machine Learning 1993, 236-243. M. Kaufmann (Ed.).
51. Quinlan J.R. C4.5: Programs for machine learning. Machine Learning 1994, 16:235-240.
52. Rumpel C., Koegel-Knabner I. Deep soil organic matter-a key but poorly understood component of terrestrial C cycle. Plant and Soil 2011, 338:143-158.
53. Solomatine D.P., Shrestha D.L. A novel method to estimate model uncertainty using machine learning techniques. Water Resources Research 2009, 45.
54. Tranter G., et al. Building and testing conceptual and empirical models for predicting SBD. Soil Use and Management 2007, 23:437-443.
55. Turner M.G. Landscape ecology- - the effect of pattern on process. Annual Review of Ecology and Systematics 1989, 20:171-197.
56. Ungaro F., Staffilani F., Tarocco P. Assessing and mapping topsoil organic carbon stock at regional scale: a scorpan kriging approach conditional on soil map delineations and land use. Land Degradation & Development 2010, 21:565-581.
57. Van Oost K., Quine T.A., Govers G., Heckrath G. Modeling soil erosion induced carbon fluxes between soil and atmosphere on agricultural land using SPEROS-C. Soil Erosion and Carbon Dynamics 2006, 37-51. Taylor & Francis Group, USA. E.J. Roose, R. Lal, C. Feller, B. Barthes, B.A. Stewart (Eds.).
58. Van Oost K., Quine T.A., Govers G., De Gryze S., Six J., Harden J.W., Ritchie J.C., McCarty G.W., Heckrath G., Kosmas C., Giraldez J.V., da Silva J.R.M., Merckx R. The impact of agricultural soil erosion on the global carbon cycle. Science 2007, 318:626-629.
59. Van Oost K., Six J., Govers G., Quine T., De Gryze S. Soil erosion: a carbon sink or source? Response. Science 2008, 319:1042.
60. Vasques G.M., Grunwald S., Comerford N.B., Sickman J.O. Regional modelling of soil carbon at multiple depths within a subtropical watershed. Geoderma 2010, 156:326-336.
61. Viaud V., Angers D.A., Walter C. Toward landscape-scale modelling of soil organic matter dynamics in agroecosystems. Soil Science Society of America Journal 2010, 74:1847-1860.
62. Walter C., Rossel R.A.V., McBratney A.B. Spatio-temporal simulation of the field-scale evolution of organic carbon over the landscape. Soil Science Society of America Journal 2003, 67:1477-1486.
63. Walter C., Merot P., Layer B., Dutin G. The effect of hedgerows on soil organic carbon storage in hillslopes. Soil Use and Management 2003, 19:201-207.
64. Walton J.T. Subpixel urban land cover estimation: comparing cubist, random forests, and support vector regression. Photogrammetric Engineering and Remote Sensing 2008, 74:1213-1222.
65. Zhang Z.Q., et al. Application of categorical information in the spatial prediction of soil organic carbon in the red soil area of China. Soil Science and Plant Nutrition 2010, 56:307-318.