Normalization of array CGH data

Methods in Microarray Normalization

Volumn , Issue , 2008, Pages 233-244

  Curry, Bo ^a   Ghosh, Jayati ^a   Troup, Charles ^a  

^a AGILENT TECHNOLOGIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84883888687     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (10)

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2. Toruner GA, Streck DL, Schwalb MN, Dermody JJ, An oligonucleotide based array-CGH system for detection of genome-wide copy number changes including subtelomeric regions for genetic evaluation of mental retardation, Am J Med Genet A, 143(8), 824–829, 2007.
3. Agilent˛Feature˛Extraction˛Manual:˛http://www.chem.agilent.com/Scripts/PDS. asp?lPage=2547
4. Cleveland WS, Devlin SJ, Locally weighted regression: An approach to regression analysis by local fitting, J Am Stat Assoc, 83, 596–610, 1988; http://www.netlib.org/a/loess
5. Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE, Rosetta error model for gene expression analysis, Bioinformatics, 22(9), 1111–1121, 2006.
6. Lipson D, Aumann Y, Ben-Dor A, Linial N, Yakhini Z, Efficient calculation of interval scores for DNA copy number data analysis, Proc RECOMB ‘05, LNCS 3500, p. 83, Springer–Verlag, 2005. Also in J Computational Biol, 13(2), 215–228, 2006.
7. Lipson D, Ph.D. thesis, http://www.cs.technion.ac.il/users/wwwb/cgi-bin/tr-get.cgi/2007/PHD/PHD-2007-05.pdf
8. Agilent CGH Analytics Manual: http://www.chem.agilent.com/Scripts/PDS.asp ?lPage=29457
9. http://www.path.cam.ac.uk/~pawefish/ColonCellLineDescriptions/HT29.html
10. Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, et al., Global variation in copy number in the human genome, Nature, 444, 444–454, 2006.