Performance evaluation of BLAST on SMP machines

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4331 LNCS, Issue , 2006, Pages 668-676

  Kim, Hong Soog ^a,b   Kim, Hae Jin ^a   Han, Dong Soo ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Electronics and Telecommunications Research Institute (ETRI)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BETTER PERFORMANCE; DISTRIBUTED-MEMORY MULTIPROCESSORS; EXPONENTIAL RATES; LARGE-SCALE SEQUENCES; LINUX- OPERATING SYSTEM; OPTIMIZED CONFIGURATION; PERFORMANCE TESTS; SEQUENCE DATABASE;

COST EFFECTIVENESS;

QUERY PROCESSING;

EID: 84883857479     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11942634_69     Document Type: Conference Paper

References (7)

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5. Altschul, S., Madden, T., Schaffer, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped BLAST and PSI-BLAST: A new generation of protein katabase search programs. Nucleic Acids Research 25 (1997) 3389-3402 (Pubitemid 27359211)
6. Camp, N., Cofer, H., Gomperts, R.: High-Throughput BLAST. Technical report, Silicon Graphics, Inc. (1998)
7. Hwang, K., Xu, Z.: Chapter 12 Parallel Paradignms and Programming Model. In: Scalable Parallel Computing. McGraw-Hill Companies, Inc. (1998)