Halojulellaceae a new family of the order Pleosporales

Phytotaxa

Volumn 130, Issue 1, 2013, Pages 14-24

  Ariyawansa, Hiran A ^a,b   Jones, Evan B G ^c   Suetrong, Satinee ^d   Alias, Siti A ^c   Kang, Ji Chuan ^a   Hyde, Kevin D ^b  

^a GUIZHOU UNIVERSITY   (China)

^b MAE FAH LUANG UNIVERSITY   (Thailand)

^c UNIVERSITY OF MALAYA   (Malaysia)

^d NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

Dothideomycetes; LSU rDNA; RPB2; SSU rDNA; Taxonomy; TEF 1 alpha

Indexed keywords

EID: 84883789824     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.130.1.2     Document Type: Article

References (33)

1. Alias, S.A. & Jones, E.B.G. (2000) Colonization of mangrove wood by marine fungi at Kuala Selangor mangrove stand, Malaysia. Fungal Diversity 5: 9-21. http://dx.doi.org/10.1007/bf02461661
2. Aptroot, A. & van den Boom, P.P.G. (1995) Strigula lateralis spec. nov. with notes on the genus Julella (Ascomycetes). Mycotaxon 56: 1-8.
3. Barr, M.E. (1979b) On the Massariaceae in North America. Mycotaxon 9: 17-37.
4. Barr, M.E. (1985) On Julella, Delacourea, and Decaisnella, three dictyosporous genera described by J. H. FABRE. Sydowia, Annales Mycologici Ser. II, 38: 11-19.
5. Barr, M.E. (1987a) New taxa and combinations in the Loculoascomycetes. Mycotaxon 29: 501-505.
6. Borse, B.D. (1987) Marine fungi from India - V Current Science 56: 1109-1111.
7. Cai, L., Guo, X.Y. & Hyde, K.D. (2008) Morphological and molecular characterization of a new anamorphic genus Cheirosporium, from freshwater in China. Persoonia 20: 53-58. http://dx.doi.org/10.3767/003158508x314732
8. Cai, L., Jeewon, R. & Hyde, K.D. (2006) Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology. Mycological Research 110: 137-150. http://dx.doi.org/10.1016/j.mycres.2005.09.014
9. Cannon PF & Kirk PM (2007) Fungal families of the world. CABI,Wallingford.
10. Chomnunti, P., Schoch, C.L., Aguirre-Hudson, B., Ko Ko, T.W., Hongsanan, S., Jones, E.B.G., Kodsueb, R., Phookamsak, R., Chukeatirote, E., Bahkali, A.H. & Hyde, K.D. (2011) Capnodiaceae Fungal Diversity 51: 103-134. http://dx.doi.org/10.1007/s13225-011-0145-6
11. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic Acids Symposium Series, pp 95-98.
12. Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17(8):754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.754
13. Hyde, K.D. (1992) Julella avicenniae (Borse) comb. nov. (Thelenellaceae) from intertidal mangrove wood and miscellaneous fungi from the NE coast of Queensland. Mycological Research 96: 939-942. http://dx.doi.org/10.1016/s0953-7562(09)80594-7
14. Kishino, H. & Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29: 170-179. http://dx.doi.org/10.1007/bf02100115
15. Kohlmeyer, J., Volkmann-Kohlmeyer, B. & Eriksson, O.E. (1997) Fungi on Juncusroemerianus. 9. New obligate and facultative marine ascomycotina. Botanica Marina 40: 291-300. http://dx.doi.org/10.1515/botm.1997.40.1-6.291
16. Lindau, G. (1897) Pyrenomycetineae, Laboulbeniineae. In: Engler A, Prantl K (eds) Die Natürlichen Pflanzenfamilien 1. Verlag von Wilhelm Engelmann, Leipzig, pp 321-505.
17. Liu, J.K., Phookamsak, R., Doilom M et al (2012) Towards a natural classification of Botryosphaeriales. Fungal Diversity 57: 149-210. http://dx.doi.org/10.1007/s13225-012-0207-4
18. Lumbsch, H.T. & Huhndorf, S.M. (2010) Outline of Ascomycota - 2009. Fieldiana Life and Earth Sciences 1: 1-60. ME (1979b). http://dx.doi.org/10.3158/1557.1
19. Luttrell, E.S. (1973) Loculoascomycetes. In: Ainsworth GC, SparrowFK, Sussman AS (eds) The fungi, an advanced treatise, ataxonomic review with keys: ascomycetes and fungi imperfecti. Academic, New York.
20. Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop 2010 (GCE), pp 1-8. http://dx.doi.org/10.1109/gce.2010.5676129
21. Nylander, J.A.A. (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
22. Purvis, O.W., Coppins, B.J., Hawksworth, D.L., James, P.W. & Moore, D.M. (1992) The Lichen Flora of Great Britain and Ireland. London: The Natural History Museum.
23. Rannala, B. & Yang, Z. (1996) Probability distribution of molecular evolutionarytrees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311. http://dx.doi.org/10.1007/bf02338839
24. Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12):1572. http://dx.doi.org/10.1093/bioinformatics/btg180
25. Schoch, C.L., Crous, P.W., Groenewald J.Z. & Boehm, E.W.A. et al (2009) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1-15. http://dx.doi.org/10.3114/sim.2009.64.01
26. Stamatakis, A. (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
27. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A Rapid Bootstrap Algorithm for the RAxMLWeb Servers. Systematic Biology 57: 758-771. http://dx.doi.org/10.1080/10635150802429642
28. Suetrong, S., Schoch, C.L., Spatafora, J.W., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Sakayaroj, J., Phongpaichit, S., Tanaka, K., Hirayama, K. & Jones, E.B.G. (2009) Molecular systematics of the marine Dothideomycetes. Studies in Mycology 64: 155-173. http://dx.doi.org/10.3114/sim.2009.64.09
29. Swofford, D.L.(2002) PAUP* 4.0: phylogenetic analysis using parsimony (* and other methods). Sinauer Associates, Sunderland.
30. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25(24): 4876.
31. von Arx, J.A. & Müller, E. (1975) A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159. http://dx.doi.org/10.2307/3758851
32. Zhang, Y., Crous, P.W., Schoch, C.L. & Hyde, K.D. (2012) Pleosporales. Fungal Diversity 52: 1-225. http://dx.doi.org/10.1007/s13225-011-0117-x
33. Zhaxybayeva, O. & Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3(1): 4. http://dx.doi.org/10.1186/1471-2164-3-4