Reyranella soli sp. nov., isolated from forest soil, and emended description of the genus Reyranella Pagnier et al. 2011

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART9, 2013, Pages 3164-3167

  Kim, Soo Jin ^a   Ahn, Jae Hyung ^a   Lee, Tae Hyung ^a   Weon, Hang Yeon ^a   Hong, Seung Beom ^a   Seok, Soon Ja ^a   Whang, Kyung Sook ^b   Kwon, Soon Wo ^a  

^a National Institute of Animal Science   (South Korea)

^b Mokwon University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; ETHANOLAMINE DERIVATIVE; FATTY ACID; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLMETHYLETHANOLAMINE; RNA 16S; UBIDECARENONE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BOOTSTRAPPING; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FOREST SOIL; GENE SEQUENCE; GENETIC ANALYSIS; GRAM NEGATIVE BACTERIUM; GRAM STAINING; LIPID ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPIC VARIATION; PHYLOGENETIC TREE; PRIORITY JOURNAL; REYRANELLA MASSILIENSIS; REYRANELLA SOLI; SEA; SOUTH KOREA; SPECIES COMPARISON; STRAIN IDENTIFICATION; TAXONOMIC RANK; TYPE STRAIN;

ALPHAPROTEOBACTERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES; UBIQUINONE;

EID: 84883762402     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.045922-0     Document Type: Article

References (11)

1. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
2. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
3. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
4. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S.C., Jeon, Y. S., Lee, J. H., Yi, H., Won, S. & Chun, J. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
5. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
6. Pagnier, I., Raoult, D. & La Scola, B. (2011). Isolation and characterization of Reyranella massiliensis gen. nov., sp. nov. from freshwater samples by using an amoeba co-culture procedure. Int J Syst Evol Microbiol 61, 2151-2154.
7. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with arb. Nucleic Acids Res 35, 7188-7196.
8. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
9. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
10. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24, 1596-1599.
11. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.