Automatic registration of multi-modal microscopy images for integrative analysis of prostate tissue sections

BMC Cancer

Volumn 13, Issue , 2013, Pages

  Lippolis, Giuseppe ^a   Edsjö, Anders ^b   Helczynski, Leszek ^b   Bjartell, Anders ^a   Overgaard, Niels Chr ^c  

^a LUND UNIVERSITY HOSPITAL   (Sweden)

^b Lund University   (Sweden)

^c LUND UNIVERSITY   (Sweden)

Author keywords

Hematoxylin Eosin; Histological sections; Image registration; Multiplex analysis; p63 AMACR; Prostate cancer; Scale invariant feature transform; Time resolved fluorescence imaging

Indexed keywords

ANDROGEN RECEPTOR; HEMATOXYLIN; PARAFFIN; PROTEIN P63;

ALGORITHM; ARTICLE; AUTOMATION; CONTROLLED STUDY; FLUORESCENCE ANALYSIS; GLEASON SCORE; IMAGE ANALYSIS; IMAGE PROCESSING; MICROSCOPY; PROSTATE; PROSTATE BIOPSY; PROSTATE CANCER; PROSTATECTOMY; TISSUE SECTION; TUMOR INVASION;

ALGORITHMS; BIOPSY; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMMUNOHISTOCHEMISTRY; MALE; MEDICAL RECORDS SYSTEMS, COMPUTERIZED; MICROSCOPY; NEOPLASM GRADING; PROSTATE; PROSTATIC NEOPLASMS; REPRODUCIBILITY OF RESULTS;

EID: 84883522410     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-13-408     Document Type: Article

References (26)

1. Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D. Global cancer statistics. CA Cancer J Clin 2011, 61(2):69-90.
2. Heidenreich A, Aus G, Bolla M, Joniau S, Matveev VB, Schmid HP, Zattoni F. EAU guidelines on prostate cancer. Eur Urol 2008, 53(1):68-80.
3. Gleason DF. Classification of prostatic carcinomas. Cancer Chemother Rep 1966, 50(3):125-128.
4. Bjartell A, Montironi R, Berney DM, Egevad L. Tumour markers in prostate cancer II: diagnostic and prognostic cellular biomarkers. Acta Oncol 2011, 50(Suppl 1):76-84.
5. Kononen J, Bubendorf L, Kallioniemi A, Barlund M, Schraml P, Leighton S, Torhorst J, Mihatsch MJ, Sauter G, Kallioniemi OP. Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat Med 1998, 4(7):844-847.
6. Bubendorf L, Nocito A, Moch H, Sauter G. Tissue microarray (TMA) technology: miniaturized pathology archives for high-throughput in situ studies. J Pathol 2001, 195(1):72-79.
7. He L, Long LR, Antani S, Thoma GR. Histology image analysis for carcinoma detection and grading. Comput Methods Programs Biomed 2012, 107(3):538-556.
8. Ho J, Parwani AV, Jukic DM, Yagi Y, Anthony L, Gilbertson JR. Use of whole slide imaging in surgical pathology quality assurance: design and pilot validation studies. Hum Pathol 2006, 37(3):322-331.
9. Braumann UD, Kuska JP, Einenkel J, Horn LC, Loffler M, Hockel M. Three-dimensional reconstruction and quantification of cervical carcinoma invasion fronts from histological serial sections. IEEE Transactions on Medical Imaging 2005, 24(10):1286-1307.
10. Kwak JT, Hewitt SM, Sinha S, Bhargava R. Multimodal microscopy for automated histologic analysis of prostate cancer. BMC Cancer 2011, 11:62.
11. Park H, Piert MR, Khan A, Shah R, Hussain H, Siddiqui J, Chenevert TL, Meyer CR. Registration methodology for histological sections and in vivo imaging of human prostate. Acad Radiol 2008, 15(8):1027-1039.
12. Wahlby C, Erlandsson F, Bengtsson E, Zetterberg A. Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei. Cytometry 2002, 47(1):32-41.
13. Lowe DG. Object Recognition from Local Scale-Invariant Features. Proceedings of the Seventh IEEE International Conference on Computer Vision, 1999, Volume 2 1999, 1150-1157. Kerkyra, Greece: IEEE Computer Society.
14. Chen J, Tian J. Rapid multi-modality preregistration based on SIFT descriptor. Conf Proc IEEE Eng Med Biol Soc: 30 Aug-3 Sep 2006; New York, USA 2006, 1437-1440. Piscataway, NJ: IEEE Service Center, USA.
15. Tang CM, Dong Y, Su XH. Automatic Registration based on Improved SIFT for Medical Microscopic Sequence Images. Proceedings of 2008 International Symposium on Intelligent Information Technology Application: 20-22 Dec 2008, Volume 1 2008, 580-583. Shanghai, China: IEEE Computer Society.
16. Wei LF, Pan L, Lin L, Yu L. The Retinal Image Registration Based on Scale Invariant Feature. 3rd International Conference on Biomedical Engineering and Informatics (Bmei 2010): 16-18 Oct 2010, Volume 2 2010, 639-643. Yantai, China: IEEE.
17. Zhan Y, Feldman M, Tomaszeweski J, Davatzikos C, Shen D. Registering histological and MR images of prostate for image-based cancer detection. Med Image Comput Comput Assist Interv 2006, 9(Pt 2):620-628.
18. Seveus L, Vaisala M, Syrjanen S, Sandberg M, Kuusisto A, Harju R, Salo J, Hemmila I, Kojola H, Soini E. Time-resolved fluorescence imaging of europium chelate label in immunohistochemistry and in situ hybridization. Cytometry 1992, 13(4):329-338.
19. Siivola P, Pettersson K, Piironen T, Lovgren T, Lilja H, Bjartell A. Time-resolved fluorescence imaging for specific and quantitative immunodetection of human kallikrein 2 and prostate-specific antigen in prostatic tissue sections. Urology 2000, 56(4):682-688.
20. Epstein JI, Allsbrook WC, Amin MB, Egevad LL. The 2005 international society of urological pathology (ISUP) consensus conference on Gleason grading of prostatic carcinoma. Am J Surg Pathol 2005, 29(9):1228-1242.
21. Mellinger GT, Gleason D, Bailar J. The histology and prognosis of prostatic cancer. J Urol 1967, 97(2):331-337.
22. Zitova B, Flusser J. Image registration methods: a survey. Image and Vision Computing 2003, 21(11):977-1000.
23. Lowe DG. Distinctive image features from scale-invariant keypoints. International Journal of Computer Vision 2004, 60(2):91-110.
24. VLFeat An open and portable library of computer vision algorithms http://www.vlfeat.org/, VLFeat.
25. Fischler MA, Bolles RC. Random sample consensus - a paradigm for model-fitting with applications to image-analysis and automated cartography. Communications of the Acm 1981, 24(6):381-395.
26. Beis JS, Lowe DG. Shape indexing using approximate nearest-neighbour search in high-dimensional spaces. 1997 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Proceedings: 17-19 Jun 1997 1997, 1000-1006. San Juan, Puerto Rico: IEEE Computer Society.