Discovery, distribution and diversity of Puroindoline-D1 genes in bread wheat from five countries (Triticum aestivum L.)

BMC Plant Biology

Volumn 13, Issue 1, 2013, Pages

  Chen, Feng ^a,b,c   Li, Huanhuan ^a   Cui, Dangqun ^a,b,c  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

^b Key Laboratory of Physiological Ecology and Genetic Improvement of Food Crops in Henan Province   (China)

^c Key Laboratory of Wheat and Maize Crop Science   (China)

Author keywords

Bread wheat (Triticum aestivum L.); Functional marker; Grain texture; Primer walking; Puroindoline D1 genes

Indexed keywords

TRITICUM AESTIVUM;

PLANT DNA; VEGETABLE PROTEIN;

ALLELE; ARTICLE; GENETICS; METABOLISM; WHEAT;

ALLELES; DNA, PLANT; PLANT PROTEINS; TRITICUM;

EID: 84883505060     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-13-125     Document Type: Article

References (47)

1. Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Bechert M, Aubourg S, Weissenbach J, Caboche M, Bernard M, Leroy P, Chalhoub B. Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell 2005, 17:1033-1045. 10.1105/tpc.104.029181, 1087984, 15749759.
2. Giroux MJ, Morris CF. A glycine to serine change in puroindoline b is associated with wheat grain hardness and low levels of starch-surface friabilin. Theor Appl Genet 1997, 95:857-864.
3. Giroux MJ, Morris CF. Wheat grain hardness results from highly conserved mutations in friabilin components puroindoline a and b. Proc Natl Acad Sci U S A 1998, 95:6262-6266. 10.1073/pnas.95.11.6262, 27651, 9600953.
4. Morris CF. Puroindolines: the molecular genetic basis of wheat grain hardness. Plant Mol Biol 2002, 248:633-647.
5. Gollan P, Smith K, Bhave M. Gsp-1 genes comprise a multigene family in wheat that exhibits a unique combination of sequence diversity yet conservation. J Cereal Sci 2007, 45:184-198.
6. Tranquilli G. Substitutions and deletions of genes related to grain hardness in wheat and their effect on grain texture. Crop Sci 2002, 42:1812-1817.
7. Gautier MF, Cosson P, Guirao A, Alary R, Joudrier P. Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species. Plant Sci 2000, 153:81-91.
8. Gazza L, Nocente F, Ng PKW, Pogna NE. Genetic and biochemical analysis of common wheat cultivars lacking puroindoline a. Theor Appl Genet 2005, 110:470-478. 10.1007/s00122-004-1854-y, 15657742.
9. Lillemo M, Morris CF. A leucine to proline mutation in puroindoline b is frequently present in hard wheats from Northern Europe. Theor Appl Genet 2000, 100:1100-1107.
10. Morris CF, Lillemo M, Simeone MC, Giroux MJ, Babb SL, Kimberlee KK. Prevalence of puroindoline grain hardness genotypes among historically significant North American spring and winter wheats. Crop Sci 2001, 41:218-228.
11. Bhave M, Morris CF. Molecular genetics of puroindolines and related genes: allelic diversity in wheat and other grasses. Plant Mol Biol 2008, 66:205-219. 10.1007/s11103-007-9263-7, 18049798.
12. Bhave M, Morris CF. Molecular genetics of puroindolines and related genes: regulation of expression, membrane binding properties and applications. Plant Mol Biol 2008, 66:221-231. 10.1007/s11103-007-9264-6, 18049797.
13. Morris CF, Bhave M. Reconciliation of D-genome puroindoline allele designations with current DNA sequence data. J Cereal Sci 2008, 48:277-287.
14. Chen F, He ZH, Chen DS, Zhang CL, Xia XC. Influence of puroindoline allele on milling, steamed bread, noodles and pan bread in common spring wheat. J Cereal Sci 2007, 45:59-66.
15. Ma DY, Zhang Y, Xia XC, Morris CF, He ZH. Milling and Chinese raw white noodle qualities of common wheat near-isogenic lines differing in puroindoline b allele. J Cereal Sci 2009, 50:126-130.
16. Martin JM, Frohberg RC, Morris CF, Talbert LE, Giroux MJ. Milling and bread baking traits associated with puroindoline sequence type in hard red spring wheat. Crop Sci 2001, 41:228-234.
17. Lillemo M, Chen F, Xia XC, William M, Peña RJ, Trethowan R, He ZH. Puroindoline grain hardness alleles in CIMMYT bread wheat. J Cereal Sci 2006, 44:86-92.
18. Chen F, He ZH, Xia XC, Xia LQ, Zhang XY, Lillemo M, Morris CF. Molecular and biochemical characterization of puroindoline a and b alleles in Chinese landraces and historical cultivars. Theor Appl Genet 2006, 112:400-409. 10.1007/s00122-005-0095-z, 16344983.
19. Li GY, He ZH, Lillemo M, Sun QX, Xia XC. Molecular characterization of allelic variations at Pina and Pinb loci in Shandong wheat landraces, historical and current cultivars. J Cereal Sci 2008, 47:510-517.
20. Chang C, Zhang HP, Xu J, Li WH, Liu GT, You MS, Li BY. Identification of allelic variations of puroindoline genes controlling grain hardness in wheat using a modified denaturing PAGE. Euphytica 2006, 152:225-234.
21. Giroux MJ, Talbert L, Habernicht DK, Lanning S, Hemphill A, Martin JM. Association of puroindolines sequence type and grain hardness in hard red spring wheat. Crop Sci 2000, 40:370-374.
22. Morris CF, Massa AN. Puroindoline genotype of the U.S. National Institute of Standards & Technology reference material 8441, wheat hardness. Cereal Chem 2003, 80:674-678.
23. Chen F, Beecher B, Morris CF. Physical mapping and a new variant of Puroindoline b-2 genes in wheat. Theor Appl Genet 2010, 120:745-751. 10.1007/s00122-009-1195-y, 19911160.
24. Chen F, Xu HX, Zhang FY, Xia XC, He ZH, Wang DW, Dong ZD, Zhan KH, Cheng XY, Cui DQ. Physical mapping of puroindoline b-2 genes and molecular characterization of a novel variant in durum wheat (Triticum turgidum L.). Mol Breed 2011, 28:153-161.
25. Wilkinson M, Wan Y, Tosi P, Leverington M, Snape J, Mitchel RAC, Shewry PR. Identification and genetic mapping of variant forms of puroindoline b expressed in developing wheat grain. J Cereal Sci 2008, 48:722-728.
26. Chen F, Zhang FY, Cheng XY, Morris CF, Xu HX, Dong ZD, Zhan KH, Cui DQ. Association of Puroindoline b-B2 variants with grain traits, yield components and flag leaf size in bread wheat (Triticum aestivum L.) varieties of the Yellow and Huai Valleys of China. J Cereal Sci 2010, 52:247-253.
27. Geng HW, Beecher BS, He Z, Kiszonas AM, Morris CF. Prevalence of Puroindoline D1 and Puroindoline b-2 variants in U.S. Pacific Northwest wheat breeding germplasm pools, and their association with kernel texture. Theor Appl Genet 2012, 124:1259-1269. 10.1007/s00122-011-1784-4, 22231024.
28. Mohler V, Schmolke M, Paladey E, Seling S, Hartl L. Association analysis of Puroindoline-D1 and Puroindoline b-2 loci with 13 quality traits in European winter wheat (Triticum aestivum L.). J Cereal Sci 2012, 56:623-628.
29. Chen F, Zhang FY, Morris CF, He ZH, Xia XC, Cui DQ. Molecular characterization of puroindoline a-D1b genotype and development of STS marker in bread wheat (Triticum aestivum L.). J Cereal Sci 2010, 52:80-82.
30. Chen F, Zhang FY, Xia XC, Dong ZD, Cui DQ. Distribution of puroindoline alleles in bread wheat of the Yellow and Huai Valley of China and discovery of a novel puroindoline a allele without PINA protein. Mol Breed 2012, 29:371-378.
31. Ikeda MT, Cong H, Suzuki T, Takaka K. Identification of new Pina null mutations among Asian common wheat cultivars. J Cereal Sci 2010, 51:235-237.
32. Zhuang QS. Chinese wheat improvement and pedigree analysis 2003, 1-681. Beijing: Chinese Agric Press, in Chinese.
33. Morris CF, King GE. Registration of hard kernel puroindoline allele near-isogenic line hexaploid wheat genetic stocks. J Plant Regist 2008, 2:67-68.
34. Chen F, He ZH, Xia XC, Lillemo M, Morris CF. A new puroindoline b mutation presented in Chinese winter wheat cultivar Jingdong 11. J Cereal Sci 2005, 42:267-269.
35. Neff MM, Neff JD, Chory J, Pepper AE. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 1998, 14:387-392. 10.1046/j.1365-313X.1998.00124.x, 9628033.
36. McIntosh RA, Dubcovsky J, Rogers WJ, Morris C, Appels R, Xia XC. Catalogue of gene symbols for wheat: 2009 supplement 2009, published online at: http://wheat.pw.usda.gov/ggpages/wgc/2009upd.html.
37. McIntosh RA, Devos KM, Dubcovsky J, Rogers WJ, Morris CF, Appels R, Anderson OD. Catalogue of gene symbols for wheat: 2007 supplement 2007, published online at: http://wheat.pw.usda.gov/ggpages/wgc/2007upd.html.
38. Ramalingam A, Palombo EA, Bhave M. The Pinb-2 genes in wheat comprise a multigene family with great sequence diversity and important variants. J Cereal Sci 2012, 56:171-180.
39. Xia LQ, Chen F, He ZH, Chen XM, Morris CF. Occurrence of puroindoline alleles in Chinese winter wheats. Cereal Chem 2005, 82:38-43.
40. Ram S, Jain N, Shoran J, Singh R. New frame shift mutation in puroindoline b in Indian wheat cultivars Hyb65 and Ni5439. J Plant Biochem Biotechnol 2005, 14:45-48.
41. Chen F, Yu YX, He ZH, Xia XC. Prevalence of a novel puroindoline allele in Yunnan endemic wheats (Triticum aestivum ssp. Yunnanense King). Euphytica 2007, 156:39-46.
42. Wang J, Sun JZ, Liu DC, Yang WL, Wang DW, Tong YP, Zhang AM. Analysis of Pina and Pinb alleles in the micro-core collections of Chinese wheat germplasm by Ecotilling and identification of a novel Pinb allele. J Cereal Sci 2008, 48:836-842.
43. Tanaka H, Morris CF, Haruna M, Tsujimoto H. Prevalence of puroindoline alleles in wheat from eastern Asia including the discovery of a new SNP in puroindoline b. Plant Genet Resour 2008, 6:142-152.
44. Wang L, Li GY, Xia XC, He ZH, Mu PY. Molecular characterization of Pina and Pinb allelic variations in Xinjiang landraces and commercial wheat cultivars. Euphytica 2008, 164:745-752.
45. Ikeda TM, Ohnishi N, Nagamine T, Oda S, Hisatomi T, Yano H. Identification of new puroindoline genotypes and their protein products among wheat cultivars. J Cereal Sci 2005, 41:1-6.
46. Ayala M, Guzmán C, Alvarez J, Peña R. Characterization of genetic diversity of puroindoline genes in Mexican wheat landraces. Euphytica 2013, 190:53-63.
47. Cane K, Spackman M, Eagles H. Puroindoline genes and their effects on grain quality traits in southern Australian wheat cultivars. Aust J Agr Res 2004, 55:89-95.