Injury Profile SIMulator, a Qualitative Aggregative Modelling Framework to Predict Crop Injury Profile as a Function of Cropping Practices, and the Abiotic and Biotic Environment. I. Conceptual Bases

PLoS ONE

Volumn 8, Issue 9, 2013, Pages

  Aubertot, Jean Noël ^a,b   Robin, Marie Hélène ^a,c  

^a CEMAGREF   (France)

^b UNIVERSITÉ DE TOULOUSE   (France)

^c UNIVERSITÉ DE TOULOUSE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ABIOTIC ENVIRONMENT; AGROECOSYSTEM; ARTICLE; BIOTIC ENVIRONMENT; CONCEPT ANALYSIS; CONCEPTUAL FRAMEWORK; CROP MANAGEMENT; PLANT DISEASE; PREDICTION; QUALITATIVE ANALYSIS; SIMULATION; SOCIAL ASPECT; SOCIOECONOMICS; STATISTICAL MODEL; WHEAT;

ANIMALS; CROPS, AGRICULTURAL; MODELS, THEORETICAL; SOFTWARE;

EID: 84883425594     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0073202     Document Type: Article

References (56)

1. Fess TL, Kotcon JB, Benedito VA, (2011) Crop breeding for low input agriculture: a sustainable response to feed a growing world population. Sustainability 3: 1742-1772.
2. Kropff MJ, Bouma J, Jones JW, (2001) Systems approaches for the design of sustainable agro-ecosystems. Agricultural Systems 70: 369-393.
3. Kropff MJ, Teng PS, Rabbinge R, (1995) The challenge of linking pest and crop models. Agricultural Systems 49: 413-434.
4. Birch ANE, Begg GS, Squire GR, (2011) How agro-ecological research helps to address food security issues under new IPM and pesticide reduction policies for global crop production systems. Journal of Experimental Botany 62: 3251-3261.
5. Ferron P, Deguine JP, (2005) Crop protection, biological control, habitat management and integrated farming. A review. Agronomy for Sustainable Development 25: 17-24.
6. Savary S, Willocquet L, Elazegui FA, Teng PS, Pham Van D, et al. (2000) Rice pest constraints in tropical Asia: characterization of injury profiles in relation to production situations. Plant Disease 84: 341-337.
7. Zadoks JC (1993) Modern crop protection: developments and perspectives; Zadoks JC, editor. Wageningen Netherlands: Wageningen Pers. ix +309 p.
8. Jeger MJ, (2000) Bottlenecks in IPM. Crop Protection 19: 787-792.
9. Zadoks JC, (1984) A quarter century of disease warning, 1958-1983. Plant Disease 68: 352-355.
10. Daamen RA, Wijnands FG, Vliet Gvd, (1989) Epidemics of diseases and pests of winter wheat at different levels of agrochemical input. A study on the possibilities for designing an integrated cropping system. Journal of Phytopathology 125: 305-319.
11. Breman H, de Wit CT, (1983) Rangeland Productivity and Exploitation in the Sahel. Science 221: 1341-1347.
12. Debaeke P, Munier-Jolain N, Bertrand M, Guichard L, Nolot JM, et al. (2009) Iterative design and evaluation of rule-based cropping systems: methodology and case studies. A review. Agronomy for Sustainable Development 29: 73-86.
13. Stockle CO, Martin SA, Campbell GS, (1994) CropSyst, a cropping systems simulation model: water/nitrogen budgets and crop yield. Agricultural Systems 46: 335-359.
14. Brisson N, Mary B, Ripoche D, Jeuffroy MH, Ruget F, et al. (1998) STICS: a generic model for the simulation of crops and their water and nitrogen balances. I. Theory and parameterization applied to wheat and corn. Agronomie 18: 311-346.
15. Aubertot JN, Salam MU, Diggle AJ, Dakowska S, Jedryczka M (2006) SimMat, a new dynamic module of Blackleg Sporacle for the prediction of pseudothecial maturation of L. maculans/L. biglobosa species complex. Parameterisation and evaluation under Polish conditions. In: Koopmann B, Cook S, Evans N, Ulber B, editors. Bulletin OILB/SROP. 277-285.
16. Bergez JE, Colbach N, Crespo O, Garcia F, Jeuffroy MH, et al. (2010) Designing crop management systems by simulation. European Journal of Agronomy 32: 3-9.
17. Rabbinge R, Rijsdijk FH, (1983) EPIPRE: a disease and pest management system for winter wheat, taking account of micrometeorological factors. Bulletin, OEPP 13: 297-305.
18. Zadoks JC (1988) EPIPRE: research, development and application of an integrated pest and disease management system for wheat. Bulletin SROP. 82-90.
19. Willocquet L, Savary S, Fernandez L, Elazegui FA, Castilla N, et al. (2002) Structure and validation of RICEPEST, a production situation-driven, crop growth model simulating rice yield response to multiple pest injuries for tropical Asia. Ecological Modelling 153: 247-268.
20. Willocquet L, Aubertot JN, Lebard S, Robert C, Lannou C, et al. (2008) Simulating multiple pest damage in varying winter wheat production situations. Field Crops Research 107: 12-28.
21. Savary S, Mille B, Rolland B, Lucas P, (2006) Patterns and management of crop multiple pathosystems. European Journal of Plant Pathology 115: 123-138.
22. Robin MH, Colbach N, Lucas P, Monfort F, Cholez C, et al. (2013) Injury Profile SIMulator, a hierarchical aggregative modelling framework to predict an injury profile as a function of cropping practices, and the abiotic and biotic environment. II. Proof of concept: design of IPSIM-Wheat-Eyespot. PLoS ONE. In press.
23. Sebillotte M (1990) Systèmes de culture, un concept opératoire pour les agronomes, L. Combe, D. Picard, Editors, Les Systèmes de Culture, INRA, Paris (1990), 165-196.
24. Meynard JM, Dore T, Lucas P, (2003) Agronomic approach: cropping systems and plant diseases. Comptes Rendus Biologies 326: 37-46.
25. Oblak L, Novak B, Lipuscek I, Kropivsek J (2007) Launching work orders into production of wood enterprise with the multi-criteria decision-making method. Zbornik Gozdarstva in Lesarstva: 33-39.
26. Rozman C, Pazek K, Bavec F, Bavec M, Turk J, et al. (2006) A multi-criteria analysis of spelt food processing alternatives on small organic farms. Journal of Sustainable Agriculture 28: 159-179.
27. Griffiths BS, Ball BC, Daniell TJ, Hallett PD, Neilson R, et al. (2010) Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology 46: 43-53.
28. Rozman C, Potocnik M, Pazek K, Borec A, Majkovic D, et al. (2009) A multi-criteria assessment of tourist farm service quality. Tourism Management 30: 629-637.
29. Ars MS, Bohanec M, (2010) Towards the ecotourism: a decision support model for the assessment of sustainability of mountain huts in the Alps. Journal of Environmental Management 91: 2554-2564.
30. Sadok W, Angevin F, Bergez JE, Bockstaller C, Colomb B, et al. (2009) MASC, a qualitative multi-attribute decision model for ex ante assessment of the sustainability of cropping systems. Agronomy for Sustainable Development 29: 447-461.
31. Pelzer E, Fortino G, Bockstaller C, Angevin F, Lamine C, et al. (2012) Assessing innovative cropping systems with DEXiPM, a qualitative multi-criteria assessment tool derived from DEXi. Ecological Indicators 18: 171-182.
32. Pazek K, Rozman C, Bavec F, Borec A, Bavec M, (2010) A multi-criteria decision analysis framework tool for the selection of farm business models on organic mountain farms. Journal of Sustainable Agriculture 34: 778-799.
33. Pazek K, Rozman C, (2007) The decision support system for supplementary activities on organic farms. Agricultura (Slovenia) 5: 15-20.
34. Bohanec M, Messean A, Scatasta S, Angevin F, Griffiths B, et al. (2008) A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops. Ecological Modelling 215: 247-261.
35. Pazek K, Rozman C, Irgolic A, Turk J (2012) Multicriteria decision model for evaluating less-favoured areas for agricultural production. 47th Croatian and 7th International Symposium on Agriculture, Opatija, Croatia, 13-17 February 2012 Proceedings: 222-226.
36. Vindis P, Stajnko D, Berk P, Lakota M, (2012) Evaluation of energy crops for biogas production with a combination of simulation modeling and DEX-i multicriteria method. Polish Journal of Environmental Studies 21: 763-770.
37. Pazek K, Rozman C, Pavlovic V, Cerenak A, Pavlovic M (2009) The multi-criteria decision model aid for assessment of the hop cultivars (Humulus lupulus L.). In: Florijancic T, Luzaic R, editors. Zbornik Radova 44 Hrvatski i 4 Medunarodni Simpozij Agronoma, Opatija, Hrvatska, 16-20 Veljace 2009. Osijeku, Hrvatska: Poljoprivredni Fakultet Sveucilista Josipa Jurja Strossmayera u Osijeku. 360-364.
38. Pazek K, Rozman C, Cejvanovic F, Par V, Borec A, et al. (2005) Multi attribute decision model for orchard renewal- case study in Bosnia and Herzegovina. Agricultura (Slovenia) 3: 13-20.
39. Tchamitchian M, Collange B, Navarrete M, Peyre G (2011) Multicriteria evaluation of the pathological resilience of soil-based protected cropping systems. In: Dorais M, editor. Acta Horticulturae. Leuven, Belgium: International Society for Horticultural Science (ISHS). 1239-1246.
40. Bohanec B (2003) Decision support. In: Mladeniæ D, Lavraè N, Bohanec M, Moyle S (Eds.). Data mining and decision support: Integration and collaboration, Kluwer Academic Publishers 23-35.
41. Delmotte S, Gary C, Ripoche A, Barbier JM, Wery J (2009) Contextualization of on farm ex-ante evaluation of the sustainability of innovative cropping systems in viticulture, using a multiple criteria assessment tool (DEXi). Wageningen University and Research Centre. 180-181.
42. Colbach N, Lucas P, Cavelier N, Cavelier A, (1997) Influence of cropping system on sharp eyespot in winter wheat. Crop Protection 16: 415-422.
43. Reinecke P, Fehrmann H, (1979) Rhizoctonia cerealis van der Hoeven on cereals in the Federal Republic of Germany. Zeitschrift fur Pflanzenkrankheiten und Pflanzenschutz 86: 190-204.
44. Cavelier N, Lucas P, Boulch G, (1985) Evolution of the parasite complex Rhizoctonia cerealis Van der Hoeven and Pseudocercosporella herpotrichoides (Fron) Deighton, fungi attacking the stem base of cereals. Agronomie 5: 693-700.
45. Kolmer JA, (2005) Tracking wheat rust on a continental scale. Current Opinion in Plant Biology 8: 441-449.
46. Bolton MD, Kolmer JA, Garvin DF, (2008) Wheat leaf rust caused by Puccinia triticina. Molecular Plant Pathology 9: 563-575.
47. Lançon J, Wery J, Rapidel B, Angokaye M, Gerardeaux E, et al. (2007) An improved methodology for integrated crop management systems. Agronomy for Sustainable Development 27: 101-110.
48. Ould-Sidi MM, Lescourret F, (2011) Model-based design of integrated production systems: a review. Agronomy for Sustainable Development 31: 571-588.
49. Pelzer E, Fortino G, Bockstaller C, Angevin F, Lamine C, et al. (2012) Assessing innovative cropping systems with DEXiPM, a qualitative multi-criteria assessment tool derived from DEXi. Ecological Indicators 18: 171-182.
50. Sundman KE, (1912) Mémoire sur le problème des trois corps, Acta Mathematica. 36: 105-179.
51. Li BL, (2010) Editorial. Ecological Complexity 7: 421-422.
52. Madden LV, (2006) Botanical epidemiology: some key advances and its continuing role in disease management. European Journal of Plant Pathology 115: 3-23.
53. Carpani M, Bergez JE, Monod H, (2012) Sensitivity analysis of a hierarchical qualitative model for sustainability assessment of cropping systems. Journal Environmental Modelling & Software 27-28: 15-22.
54. Wallach D, (2011) Crop model calibration: a statistical perspective. Agronomy Journal 103: 1144-1151.
55. Agresti A (2010) Matched-pairs data with ordered categories. In: Analysis of ordinal categorical data. Second edition. Wiley& Sons, Inc. Hoboken, New-Jersey, USA. 225-261.
56. Žnidaršič M, Bohanec M, Zupan B, (2006) proDEX - A DSS tool for environmental decision-making. Environmental Modelling & Software 21: 1514-1516.